Bhi04G001175 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001175
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	COSII_At2g15890-like protein
Location	chr4 : 36949684 .. 36950358 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTAAAAAATGGCACGAGACTTTTTCTTTAATAAATGGTCAAACGATCTTGAAGTGAGTTTCTATCGACTCTTAATCGATTTTACTTCCAATTTTTCCGTCTTTTCACTTTTGATTTCTTTTTCCCTCAAATCTGACCTAATTTGCTGTTGGAAAGCGTATTTCAAACTCAAAAGATTTTGAAGTGAGTTTCTACGGATTCTTAATCAATTTCACTTCGAGTTTTTTCGTCCTTTCACATTCAAAATTTCCTTTTCCCCTAAAACCAATGTGATTTTAATCAAAACAAATGAGATTCAATTAAATTCAACTCAATGAGTAATGAACTGTTTGTTTTTGTGTGTGTGTTGAAATCAGAAAGAATCACCAAAACAAGAAGTGGAGAAGCTGATTCTTCAAGCAGGAGGCGTAAAATCGTTGATCGGATGCTTACACAGGATCACAGCCATACAGAAGAGGAAAGGAATGGAAAACGAAGCAAGGAAGCCATGGAAGGGTGTGGAAGGAAGAGGAAGAGAAATGGATTGTCCAATACCAGATGGTAGAAGAAAATCTCAGAGAGGAAGATACTTTTATCAAATTCAGGAACTAGGAGCATTTTATCCTACTGAGGCTGAACATCAAATTAATATCATTGATTAATATAATCATTTGAAGCATTTATCTGCAGAA

mRNA sequence

CTTTTTTAAAAAATGGCACGAGACTTTTTCTTTAATAAATGGTCAAACGATCTTGAAAAAGAATCACCAAAACAAGAAGTGGAGAAGCTGATTCTTCAAGCAGGAGGCGTAAAATCGTTGATCGGATGCTTACACAGGATCACAGCCATACAGAAGAGGAAAGGAATGGAAAACGAAGCAAGGAAGCCATGGAAGGGTGTGGAAGGAAGAGGAAGAGAAATGGATTGTCCAATACCAGATGGTAGAAGAAAATCTCAGAGAGGAAGATACTTTTATCAAATTCAGGAACTAGGAGCATTTTATCCTACTGAGGCTGAACATCAAATTAATATCATTGATTAATATAATCATTTGAAGCATTTATCTGCAGAA

Coding sequence (CDS)

ATGGCACGAGACTTTTTCTTTAATAAATGGTCAAACGATCTTGAAAAAGAATCACCAAAACAAGAAGTGGAGAAGCTGATTCTTCAAGCAGGAGGCGTAAAATCGTTGATCGGATGCTTACACAGGATCACAGCCATACAGAAGAGGAAAGGAATGGAAAACGAAGCAAGGAAGCCATGGAAGGGTGTGGAAGGAAGAGGAAGAGAAATGGATTGTCCAATACCAGATGGTAGAAGAAAATCTCAGAGAGGAAGATACTTTTATCAAATTCAGGAACTAGGAGCATTTTATCCTACTGAGGCTGAACATCAAATTAATATCATTGATTAA

Protein sequence

MARDFFFNKWSNDLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDCPIPDGRRKSQRGRYFYQIQELGAFYPTEAEHQINIID

Homology

[Close]

BLAST of Bhi04G001175 vs. Swiss-Prot
Match: sp|Q9XIM0|MEE14_ARATH (CCG-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MEE14 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-09
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLE+E PK EVE LILQ GG+KSLIGCLH + +++K    +N      +    +G  +  
Sbjct: 95  DLEREKPKVEVENLILQTGGLKSLIGCLHGVASMEKDNKTKNGLHVGEESDREKGMNLHI 154

Query: 73  PIPDGRRKSQR 84
            IPDG  KS++
Sbjct: 155 HIPDGLPKSEQ 165

[Close]

BLAST of Bhi04G001175 vs. TAIR10
Match: AT2G15890.1 (maternal effect embryo arrest 14)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLE+E PK EVE LILQ GG+KSLIGCLH + +++K    +N      +    +G  +  
Sbjct: 95  DLEREKPKVEVENLILQTGGLKSLIGCLHGVASMEKDNKTKNGLHVGEESDREKGMNLHI 154

Query: 73  PIPDGRRKSQR 84
            IPDG  KS++
Sbjct: 155 HIPDGLPKSEQ 165

[Close]

BLAST of Bhi04G001175 vs. TrEMBL
Match: tr|A0A1S3C971|A0A1S3C971_CUCME (CCG-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103498415 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWK-GVEGRGREMD 72
           DLEKE+PKQEVEKLILQAGGVKSLIGCLH ITAI K KG E E RK WK GVEGRG + +
Sbjct: 101 DLEKETPKQEVEKLILQAGGVKSLIGCLHGITAIPKSKGKEKEERKAWKTGVEGRGNK-E 160

Query: 73  CPIPDGRRKS 82
           CPIPDG  KS
Sbjct: 161 CPIPDGLPKS 169

[Close]

BLAST of Bhi04G001175 vs. TrEMBL
Match: tr|A0A0A0LIJ6|A0A0A0LIJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237150 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.9e-19
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPW-KGVEGRGREMD 72
           DLEKESPKQEVEKLILQAGGVKSLIGC+H ITAIQK KG E E RK W K VEGRG   +
Sbjct: 101 DLEKESPKQEVEKLILQAGGVKSLIGCVHGITAIQKSKGKEKEERKAWKKEVEGRGNR-E 160

Query: 73  CPIPDGRRKS 82
           CPIPDG  KS
Sbjct: 161 CPIPDGLPKS 169

[Close]

BLAST of Bhi04G001175 vs. TrEMBL
Match: tr|A0A2P6PMX1|A0A2P6PMX1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0259611 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.9e-13
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLEKE+PK++VEKLILQAGG+KSL+GCLH I AIQK K     + KP +  E + RE  C
Sbjct: 96  DLEKETPKEDVEKLILQAGGIKSLVGCLHGIAAIQKGKTYGFNSAKPVE--EAKSRERLC 155

Query: 73  PIPDGRRKS 82
           PIPDG  KS
Sbjct: 156 PIPDGLPKS 162

[Close]

BLAST of Bhi04G001175 vs. TrEMBL
Match: tr|B9RZI1|B9RZI1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0939520 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLE+ESPK++VEKLILQAGGVKSLIGCLH I+++ K +        P   VE + +E  C
Sbjct: 219 DLERESPKEDVEKLILQAGGVKSLIGCLHGISSMHKGRKNGFGFMAPMLAVE-KEKERPC 278

Query: 73  PIPDGRRKSQ 83
           PIPDG  KSQ
Sbjct: 279 PIPDGLPKSQ 287

[Close]

BLAST of Bhi04G001175 vs. TrEMBL
Match: tr|A0A0L9TML4|A0A0L9TML4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g138900 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLEKE+PK+++E+LIL+ GGVKSLIGCLH IT++QK K    ++ K  K  EG   E  C
Sbjct: 94  DLEKETPKKDIERLILETGGVKSLIGCLHGITSMQKVKKDGIKSSKDVKSEEG---ERQC 153

Query: 73  PIPDGRRKS 82
           PIPDG  KS
Sbjct: 154 PIPDGLPKS 159

[Close]

BLAST of Bhi04G001175 vs. NCBI nr
Match: XP_008459226.1 (PREDICTED: CCG-binding protein 1 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-19
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWK-GVEGRGREMD 72
           DLEKE+PKQEVEKLILQAGGVKSLIGCLH ITAI K KG E E RK WK GVEGRG + +
Sbjct: 101 DLEKETPKQEVEKLILQAGGVKSLIGCLHGITAIPKSKGKEKEERKAWKTGVEGRGNK-E 160

Query: 73  CPIPDGRRKS 82
           CPIPDG  KS
Sbjct: 161 CPIPDGLPKS 169

[Close]

BLAST of Bhi04G001175 vs. NCBI nr
Match: XP_004153261.1 (PREDICTED: uncharacterized protein LOC101222441 [Cucumis sativus] >KGN61745.1 hypothetical protein Csa_2G237150 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 7.4e-19
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPW-KGVEGRGREMD 72
           DLEKESPKQEVEKLILQAGGVKSLIGC+H ITAIQK KG E E RK W K VEGRG   +
Sbjct: 101 DLEKESPKQEVEKLILQAGGVKSLIGCVHGITAIQKSKGKEKEERKAWKKEVEGRGNR-E 160

Query: 73  CPIPDGRRKS 82
           CPIPDG  KS
Sbjct: 161 CPIPDGLPKS 169

[Close]

BLAST of Bhi04G001175 vs. NCBI nr
Match: XP_022148538.1 (CCG-binding protein 1 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 53/69 (76.81%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLEK+SPKQEVEKLILQAGGVKSLIGCLH I AI KRKG EN A KP  G E  GRE  C
Sbjct: 93  DLEKDSPKQEVEKLILQAGGVKSLIGCLHGIAAIHKRKGSENNAAKPLNGAE--GRETGC 152

Query: 73  PIPDGRRKS 82
           PIPDG  KS
Sbjct: 153 PIPDGLPKS 159

[Close]

BLAST of Bhi04G001175 vs. NCBI nr
Match: XP_023512041.1 (CCG-binding protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 53/69 (76.81%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLEKESPKQEVEKLILQAGGVKSLIG LH I  I KRK  ENEA+KP  GVE R R  DC
Sbjct: 99  DLEKESPKQEVEKLILQAGGVKSLIGLLHGIAGIHKRKESENEAKKPLNGVERRVR--DC 158

Query: 73  PIPDGRRKS 82
           PIPDG  KS
Sbjct: 159 PIPDGLPKS 165

[Close]

BLAST of Bhi04G001175 vs. NCBI nr
Match: XP_022986608.1 (CCG-binding protein 1 [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 52/69 (75.36%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 13  DLEKESPKQEVEKLILQAGGVKSLIGCLHRITAIQKRKGMENEARKPWKGVEGRGREMDC 72
           DLEKESPKQEVEKLILQAGGVKSLIG LH I  I K+K  ENEA+KP  GVE R R  DC
Sbjct: 99  DLEKESPKQEVEKLILQAGGVKSLIGLLHGIAGIHKKKESENEAKKPLNGVERRVR--DC 158

Query: 73  PIPDGRRKS 82
           PIPDG  KS
Sbjct: 159 PIPDGLPKS 165

The following BLAST results are available for this feature:

BLAST of Bhi04G001175 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XIM0\|MEE14_ARATH	2.1e-09	45.07	CCG-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MEE14 PE=1 SV=1	[more]

BLAST of Bhi04G001175 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15890.1	1.2e-10	45.07	maternal effect embryo arrest 14	[more]

BLAST of Bhi04G001175 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C971\|A0A1S3C971_CUCME	2.2e-19	78.57	CCG-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103498415 PE=4 SV=1	[more]
tr\|A0A0A0LIJ6\|A0A0A0LIJ6_CUCSA	4.9e-19	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237150 PE=4 SV=1	[more]
tr\|A0A2P6PMX1\|A0A2P6PMX1_ROSCH	8.9e-13	62.32	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0259611 PE=4...	[more]
tr\|B9RZI1\|B9RZI1_RICCO	4.9e-11	58.57	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0939520 PE=4 SV=1	[more]
tr\|A0A0L9TML4\|A0A0L9TML4_PHAAN	4.9e-11	57.97	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g138900 PE...	[more]

BLAST of Bhi04G001175 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459226.1	3.3e-19	78.57	PREDICTED: CCG-binding protein 1 [Cucumis melo]	[more]
XP_004153261.1	7.4e-19	78.57	PREDICTED: uncharacterized protein LOC101222441 [Cucumis sativus] >KGN61745.1 hy...	[more]
XP_022148538.1	1.3e-18	76.81	CCG-binding protein 1 [Momordica charantia]	[more]
XP_023512041.1	2.4e-17	76.81	CCG-binding protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022986608.1	5.3e-17	75.36	CCG-binding protein 1 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0036033	mediator complex binding

Vocabulary: **Biological Process**
Term	Definition
GO:0010183	pollen tube guidance

Vocabulary: **INTERPRO**
Term	Definition
IPR037502	CBP1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010183	pollen tube guidance
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0036033	mediator complex binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001175	Bhi04M001175	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..78
IPR037502	CCG-binding protein 1	PANTHER	PTHR36345	FAMILY NOT NAMED	coord: 12..82

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001175	Cucumber (Gy14) v1	cgywgoB046
Bhi04G001175	Cucumber (Gy14) v2	cgybwgoB559
Bhi04G001175	Cucurbita maxima (Rimu)	cmawgoB0204
Bhi04G001175	Cucurbita maxima (Rimu)	cmawgoB0947
Bhi04G001175	Cucurbita moschata (Rifu)	cmowgoB0200
Bhi04G001175	Cucurbita moschata (Rifu)	cmowgoB0948
Bhi04G001175	Cucurbita pepo (Zucchini)	cpewgoB0145
Bhi04G001175	Cucurbita pepo (Zucchini)	cpewgoB1038
Bhi04G001175	Wild cucumber (PI 183967)	cpiwgoB389
Bhi04G001175	Wild cucumber (PI 183967)	cpiwgoB592
Bhi04G001175	Cucumber (Chinese Long) v3	cucwgoB391
Bhi04G001175	Cucumber (Chinese Long) v3	cucwgoB606
Bhi04G001175	Cucumber (Chinese Long) v2	cuwgoB386
Bhi04G001175	Cucumber (Chinese Long) v2	cuwgoB587
Bhi04G001175	Bottle gourd (USVL1VR-Ls)	lsiwgoB606
Bhi04G001175	Melon (DHL92) v3.6.1	medwgoB341
Bhi04G001175	Melon (DHL92) v3.5.1	mewgoB342
Bhi04G001175	Watermelon (Charleston Gray)	wcgwgoB626
Bhi04G001175	Watermelon (97103) v2	wgowmbB327
Bhi04G001175	Watermelon (97103) v1	wgowmB312
Bhi04G001175	Silver-seed gourd	carwgoB0174
Bhi04G001175	Silver-seed gourd	carwgoB0820