Bhi04G001124 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001124
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	conserved peptide upstream open reading frame 37
Location	chr4 : 35734414 .. 35734719 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTGCCACCATAATCGTTAGAGTCATAGCATGCTTTCAACCTCTCCAGGATTGTCAGGTTCGTAATTAATACCTTAAATGATGCCGTCTTTATGATTGATTCGATGTTCAATGAACATTATTAATATCTCTTGCCTCCTTTCTTGATGAAAATACACGTCTACAGTTGTTGAACTCATCCCCATTTTTGTACTTTATCCAGGCTGAGTACTTTCGTCATTTGCTGAAACCAGTCACGTAG

mRNA sequence

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTGCCACCATAATCGTTAGAGTCATAGCATGCTTTCAACCTCTCCAGGATTGTCAGGCTGAGTACTTTCGTCATTTGCTGAAACCAGTCACGTAG

Coding sequence (CDS)

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTGCCACCATAATCGTTAGAGTCATAGCATGCTTTCAACCTCTCCAGGATTGTCAGGCTGAGTACTTTCGTCATTTGCTGAAACCAGTCACGTAG

Protein sequence

MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT

Homology

[Close]

BLAST of Bhi04G001124 vs. TAIR10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G+  I+VRVIACFQPLQDCQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITGN--IVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Bhi04G001124 vs. TAIR10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHE-NGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MV Q+A QTRFR  K+E NG +   TI+VRVIACFQP+ +CQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Bhi04G001124 vs. TAIR10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-15
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQ+  +TRFR LK+E G A  +TI+VRVI C+QP+ +CQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. TrEMBL
Match: tr|A0A199UQL5|A0A199UQL5_ANACO (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_26596 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGSATIIVR+IACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGSATIIVRIIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. TrEMBL
Match: tr|A0A1S4DVM6|A0A1S4DVM6_CUCME (uncharacterized protein LOC103488104 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488104 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.7e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFR LKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRTLKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. TrEMBL
Match: tr|F6H111|F6H111_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g07210 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.7e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. TrEMBL
Match: tr|A0A2G9FWQ8|A0A2G9FWQ8_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16538 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAG+ATIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGTATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. TrEMBL
Match: tr|A0A0D2S6R1|A0A0D2S6R1_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_009G231400 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALK+ENGIAGSATI+VRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKYENGIAGSATIVVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. NCBI nr
Match: OAY67117.1 (hypothetical protein ACMD2_26596 [Ananas comosus])

HSP 1 Score: 112.1 bits (279), Expect = 5.9e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGSATIIVR+IACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGSATIIVRIIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. NCBI nr
Match: XP_016900036.1 (PREDICTED: uncharacterized protein LOC103488104 isoform X2 [Cucumis melo] >XP_016900037.1 PREDICTED: uncharacterized protein LOC103488104 isoform X2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFR LKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRTLKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. NCBI nr
Match: KJB58933.1 (hypothetical protein B456_009G231400, partial [Gossypium raimondii])

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALK+ENGIAGSATI+VRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKYENGIAGSATIVVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. NCBI nr
Match: PIM97324.1 (hypothetical protein CDL12_30205 [Handroanthus impetiginosus] >PIN10866.1 hypothetical protein CDL12_16538 [Handroanthus impetiginosus])

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAG+ATIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGTATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Bhi04G001124 vs. NCBI nr
Match: RAL40620.1 (hypothetical protein DM860_006690 [Cuscuta australis])

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENG+AGS+TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGVAGSSTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Bhi04G001124 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G001124 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50011.1	3.3e-19	81.13	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	1.0e-15	68.52	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	1.0e-15	66.04	conserved peptide upstream open reading frame 40	[more]

BLAST of Bhi04G001124 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A199UQL5\|A0A199UQL5_ANACO	3.9e-22	98.11	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_26596 PE=4 SV=1	[more]
tr\|A0A1S4DVM6\|A0A1S4DVM6_CUCME	8.7e-22	98.11	uncharacterized protein LOC103488104 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|F6H111\|F6H111_VITVI	8.7e-22	98.11	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g07210 PE=4 SV=...	[more]
tr\|A0A2G9FWQ8\|A0A2G9FWQ8_9LAMI	1.9e-21	96.23	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16538 P...	[more]
tr\|A0A0D2S6R1\|A0A0D2S6R1_GOSRA	1.9e-21	96.23	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_009G2...	[more]

BLAST of Bhi04G001124 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY67117.1	5.9e-22	98.11	hypothetical protein ACMD2_26596 [Ananas comosus]	[more]
XP_016900036.1	1.3e-21	98.11	PREDICTED: uncharacterized protein LOC103488104 isoform X2 [Cucumis melo] >XP_01...	[more]
KJB58933.1	2.9e-21	96.23	hypothetical protein B456_009G231400, partial [Gossypium raimondii]	[more]
PIM97324.1	2.9e-21	96.23	hypothetical protein CDL12_30205 [Handroanthus impetiginosus] >PIN10866.1 hypoth...	[more]
RAL40620.1	3.8e-21	94.34	hypothetical protein DM860_006690 [Cuscuta australis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001124	Bhi04M001124	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	FAMILY NOT NAMED	coord: 1..53
None	No IPR available	PANTHER	PTHR35281:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 37-RELATED	coord: 1..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G001124	ClCG08G011500	Watermelon (Charleston Gray)	wcgwgoB634
Bhi04G001124	CmaCh12G002160	Cucurbita maxima (Rimu)	cmawgoB0201
Bhi04G001124	CmaCh05G005280	Cucurbita maxima (Rimu)	cmawgoB0949
Bhi04G001124	CmoCh05G005560	Cucurbita moschata (Rifu)	cmowgoB0950
Bhi04G001124	CmoCh12G001700	Cucurbita moschata (Rifu)	cmowgoB0197
Bhi04G001124	Lsi08G010060	Bottle gourd (USVL1VR-Ls)	lsiwgoB609
Bhi04G001124	Cp4.1LG11g04670	Cucurbita pepo (Zucchini)	cpewgoB0147
Bhi04G001124	Cp4.1LG07g02600	Cucurbita pepo (Zucchini)	cpewgoB1034
Bhi04G001124	CsGy2G021160	Cucumber (Gy14) v2	cgybwgoB163
Bhi04G001124	Carg22496	Silver-seed gourd	carwgoB0958
Bhi04G001124	Cla022134	Watermelon (97103) v1	wgowmB317
Bhi04G001124	Cla97C08G154510	Watermelon (97103) v2	wgowmbB335

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001124	Cucumber (Gy14) v1	cgywgoB319
Bhi04G001124	Wild cucumber (PI 183967)	cpiwgoB165
Bhi04G001124	Cucumber (Chinese Long) v3	cucwgoB175
Bhi04G001124	Cucumber (Chinese Long) v2	cuwgoB168
Bhi04G001124	Melon (DHL92) v3.6.1	medwgoB333
Bhi04G001124	Melon (DHL92) v3.5.1	mewgoB332
Bhi04G001124	Silver-seed gourd	carwgoB0070