Bhi04G000237 (gene) Wax gourd

Overview
NameBhi04G000237
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionMyb_DNA-bind_3 domain-containing protein
Locationchr4 : 6335465 .. 6335947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTAGTCTCATCTAGCGTGAAGGGTTTGAGACACGAACCATTCCCCCACTATGATGAGTTTTCAATCGTATTTGGAAAAGATAGGGCCACTGGTGAAGGCAATGAAATCCTGTATGATCAAGCATCTGCAACAGATAAACATTTGGAGGATATTCAGTTGAGATCACAGGTTAATGAGCAACAAGAAAGTATACCTGACATGAACATAACGACCGTTATTGGGATGGATGAGGTTTTCCCATATACACCCATCAATAGGCGTACTGGATCGAGTAACGATACAAGAGGAACGAAAAGCAAGAGGACTCCCTCCCAATCTGAAGTGCTTGACATTGTACGCACAACAATGGACGTGCAAGAAAGTAAAATGGAGAAACTTGTCCAATGGTAGAAAGAGAAATATGAATTAGAGCTCAAGAGGCGTCAGGAGGTCATTGAACAGATTTACCAAGTTGAGGGTTTAAAGGAGGACGATTAG

mRNA sequence

ATGTTTGTAGTCTCATCTAGCGTGAAGGGTTTGAGACACGAACCATTCCCCCACTATGATGAGTTTTCAATCGTATTTGGAAAAGATAGGGCCACTGGTGAAGGCAATGAAATCCTGTATGATCAAGCATCTGCAACAGATAAACATTTGGAGGATATTCAGTTGAGATCACAGGTTAATGAGCAACAAGAAAGTATACCTGACATGAACATAACGACCGTTATTGGGATGGATGAGGTTTTCCCATATACACCCATCAATAGGCGTACTGGATCGAGTAACGATACAAGAGGAACGAAAAGCAAGAGGACTCCCTCCCAATCTGAAGTGCTTGACATTGTACGCACAACAATGGACGTGCAAGAAAGTAAAATGGAGAAACTTCTCAAGAGGCGTCAGGAGGTCATTGAACAGATTTACCAAGTTGAGGGTTTAAAGGAGGACGATTAG

Coding sequence (CDS)

ATGTTTGTAGTCTCATCTAGCGTGAAGGGTTTGAGACACGAACCATTCCCCCACTATGATGAGTTTTCAATCGTATTTGGAAAAGATAGGGCCACTGGTGAAGGCAATGAAATCCTGTATGATCAAGCATCTGCAACAGATAAACATTTGGAGGATATTCAGTTGAGATCACAGGTTAATGAGCAACAAGAAAGTATACCTGACATGAACATAACGACCGTTATTGGGATGGATGAGGTTTTCCCATATACACCCATCAATAGGCGTACTGGATCGAGTAACGATACAAGAGGAACGAAAAGCAAGAGGACTCCCTCCCAATCTGAAGTGCTTGACATTGTACGCACAACAATGGACGTGCAAGAAAGTAAAATGGAGAAACTTCTCAAGAGGCGTCAGGAGGTCATTGAACAGATTTACCAAGTTGAGGGTTTAAAGGAGGACGATTAG

Protein sequence

MFVVSSSVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLEDIQLRSQVNEQQESIPDMNITTVIGMDEVFPYTPINRRTGSSNDTRGTKSKRTPSQSEVLDIVRTTMDVQESKMEKLLKRRQEVIEQIYQVEGLKEDD
Homology
[Close]
BLAST of Bhi04G000237 vs. TrEMBL
Match: tr|M5VKI8|M5VKI8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016911mg PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 40/150 (26.67%), Postives = 75/150 (50.00%), Query Frame = 0 

Query: 4   VSSSVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLEDIQLRSQVNEQQ 63
           V +S K LR++ FPHYD    VFGKDRA G+G       A    + +ED+   +  N + 
Sbjct: 43  VHNSAKRLRNKQFPHYDTLVEVFGKDRANGKG-------AEGPAEVIEDLTDNNTFNFEG 102

Query: 64  ESIPDMNITTVIGMDEVFPYTPINRRTGSSNDTRGTKSKRTPSQS----EVLDIVRTTMD 123
           + + D+N ++      + P             TR  K  R  S S    ++   +R+ +D
Sbjct: 103 DGLDDINFSSPTTQTPICP-----------PSTRPNKRARNDSWSHTIGDMASTLRSFVD 162

Query: 124 VQESKMEKLLKRRQEVIEQIYQVEGLKEDD 150
           + ++ +E  +K R ++++++ +++GL + D
Sbjct: 163 MTKTHLE-TMKSRAKIVDELQKIQGLSDMD 173

[Close]
BLAST of Bhi04G000237 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 0 

Query: 7   SVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLED-IQLRSQVNEQQES 66
           + KGL H+ FP+YD+ S VFGKDRATG  +E   +  S       D I L    +   E 
Sbjct: 117 AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLG---DSHDED 176

Query: 67  IPDMNITTV-IGMDEVFPYTPINRRTGSSNDTRG----TKSKRTPSQSEVLDIVRTTMDV 126
           IP M    V +  DE+F       R G +++ R     +K KR   + E ++++R+ M+ 
Sbjct: 177 IPTMYSQGVHMSPDEMF-----GIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEF 236

Query: 127 QESKMEKL-----------LKRRQEVIEQIYQVEGLKEDD 150
              +++ +           ++ R +V++Q+  +  L+  D
Sbjct: 237 GNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQD 268

[Close]
BLAST of Bhi04G000237 vs. TrEMBL
Match: tr|A0A1Q3CPR8|A0A1Q3CPR8_CEPFO (Myb_DNA-bind_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25702 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 0 

Query: 9   KGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLEDIQLRSQVN--EQQESI 68
           KGLR +PFPHY +F+I++GKDRA+GEG E   D+A   +K   +    S +N  E   +I
Sbjct: 135 KGLRRKPFPHYADFTIIWGKDRASGEGAETPADEAEEIEKDFFEQIYSSGLNGTEGSANI 194

Query: 69  PDMNITTVIGMDEVFPYTPINRRTGSSNDTRG--------TKSKRTPSQSEVLDIVRTTM 120
            D      +G+    P    N   G +  T G        TKSK+  S+ EV   + + M
Sbjct: 195 EDFVHVADVGIGMSSPGVDWN---GGNAGTEGEVAASDASTKSKKR-SKVEVTKHLISNM 251

[Close]
BLAST of Bhi04G000237 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 60/163 (36.81%), Postives = 87/163 (53.37%), Query Frame = 0 

Query: 7   SVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQAS------ATDKHLEDIQLRSQVN 66
           + KGLR++P PHYD+ ++ FGKDRATG   +   D AS      A D H E         
Sbjct: 30  NAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAEDAHFE--------- 89

Query: 67  EQQESIPD--MNITTVIGMDEVFPYTPINRRT-GSSNDTRGTKSKRTPSQSEVLDIVRTT 126
            Q   IPD  M  TT   ++E  P TP ++ T G+S+   G+K KR+   SE++D+VRT 
Sbjct: 90  AQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSG--GSKRKRSGYTSEMVDVVRTN 149

Query: 127 MDVQ-----------ESKMEKLLKRRQEVIEQIYQVEGLKEDD 150
           M +Q           + K EK + RR+ V +Q+ Q+  L+ +D
Sbjct: 150 MRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEAND 180

[Close]
BLAST of Bhi04G000237 vs. NCBI nr
Match: XP_021833469.1 (uncharacterized protein At2g29880-like [Prunus avium] >XP_021833470.1 uncharacterized protein At2g29880-like [Prunus avium] >XP_021833471.1 uncharacterized protein At2g29880-like [Prunus avium])

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 43/157 (27.39%), Postives = 82/157 (52.23%), Query Frame = 0 

Query: 4   VSSSVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLEDIQLRSQVNEQQ 63
           V +S KGLR++PFPHYD    VFGKDRA G+G       A    + +ED+   S  N + 
Sbjct: 122 VHNSAKGLRNKPFPHYDTLVEVFGKDRANGKG-------AEGPAEVIEDLTDNSTFNFEG 181

Query: 64  ESIPDMNITTVIGMDEVF-PYTPINRRTGSSNDTRGTKSKRTPSQSEVLDIVRTTMDVQE 123
           + + D+N ++      +  P T  N+R  + N ++        S +++   +R+ +DV +
Sbjct: 182 DGLDDINFSSPTTQTPICPPSTRPNKRARNDNWSQ--------SMADMASTLRSFVDVTK 241

Query: 124 SKMEKL----------LKRRQEVIEQIYQVEGLKEDD 150
           + +E +           +RR ++++++ +++GL + D
Sbjct: 242 THLETVKCVLMSENATSERRGKIVDELQKIQGLSDMD 263

[Close]
BLAST of Bhi04G000237 vs. NCBI nr
Match: XP_024029924.1 (uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029925.1 uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029927.1 uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029928.1 uncharacterized protein LOC21412682 [Morus notabilis])

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 33/72 (45.83%), Postives = 39/72 (54.17%), Query Frame = 0 

Query: 7   SVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLE-----DIQLRSQVNE 66
           S KGLR++PFP+YDE  +VFGKDRA G+G   L D     DK  E     D  L S  N 
Sbjct: 34  SAKGLRNKPFPYYDELGLVFGKDRANGQGAMGLTDMVDDIDKETENDLDYDPLLMSDENM 93

Query: 67  QQESIPDMNITT 74
              SI   +I T
Sbjct: 94  DTASIGGPSIQT 105

[Close]
BLAST of Bhi04G000237 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 0 

Query: 7   SVKGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLED-IQLRSQVNEQQES 66
           + KGL H+ FP+YD+ S VFGKDRATG  +E   +  S       D I L    +   E 
Sbjct: 117 AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLG---DSHDED 176

Query: 67  IPDMNITTV-IGMDEVFPYTPINRRTGSSNDTRG----TKSKRTPSQSEVLDIVRTTMDV 126
           IP M    V +  DE+F       R G +++ R     +K KR   + E ++++R+ M+ 
Sbjct: 177 IPTMYSQGVHMSPDEMF-----GIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEF 236

Query: 127 QESKMEKL-----------LKRRQEVIEQIYQVEGLKEDD 150
              +++ +           ++ R +V++Q+  +  L+  D
Sbjct: 237 GNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQD 268

[Close]
BLAST of Bhi04G000237 vs. NCBI nr
Match: GAV82250.1 (Myb_DNA-bind_3 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 0 

Query: 9   KGLRHEPFPHYDEFSIVFGKDRATGEGNEILYDQASATDKHLEDIQLRSQVN--EQQESI 68
           KGLR +PFPHY +F+I++GKDRA+GEG E   D+A   +K   +    S +N  E   +I
Sbjct: 135 KGLRRKPFPHYADFTIIWGKDRASGEGAETPADEAEEIEKDFFEQIYSSGLNGTEGSANI 194

Query: 69  PDMNITTVIGMDEVFPYTPINRRTGSSNDTRG--------TKSKRTPSQSEVLDIVRTTM 120
            D      +G+    P    N   G +  T G        TKSK+  S+ EV   + + M
Sbjct: 195 EDFVHVADVGIGMSSPGVDWN---GGNAGTEGEVAASDASTKSKKR-SKVEVTKHLISNM 251

The following BLAST results are available for this feature:
BLAST of Bhi04G000237 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04G000237 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04G000237 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|M5VKI8|M5VKI8_PRUPE3.6e-0426.67Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016911m... [more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME6.1e-0428.13uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A1Q3CPR8|A0A1Q3CPR8_CEPFO6.1e-0435.54Myb_DNA-bind_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=C... [more]
BLAST of Bhi04G000237 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158565.11.9e-0936.81uncharacterized protein LOC111025018 [Momordica charantia][more]
XP_021833469.15.7e-0627.39uncharacterized protein At2g29880-like [Prunus avium] >XP_021833470.1 uncharacte... [more]
XP_024029924.11.4e-0445.83uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029925.1 uncharacte... [more]
XP_008441954.19.2e-0428.13PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
GAV82250.19.2e-0435.54Myb_DNA-bind_3 domain-containing protein [Cephalotus follicularis][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000237Bhi04M000237mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 118..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..107

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi04G000237Cucumber (Gy14) v1cgywgoB458
Bhi04G000237Cucumber (Gy14) v1cgywgoB684
Bhi04G000237Cucumber (Gy14) v2cgybwgoB157
Bhi04G000237Cucurbita maxima (Rimu)cmawgoB0194
Bhi04G000237Cucurbita maxima (Rimu)cmawgoB0576
Bhi04G000237Cucurbita maxima (Rimu)cmawgoB0943
Bhi04G000237Cucurbita moschata (Rifu)cmowgoB0190
Bhi04G000237Cucurbita moschata (Rifu)cmowgoB0570
Bhi04G000237Cucurbita moschata (Rifu)cmowgoB0944
Bhi04G000237Cucurbita pepo (Zucchini)cpewgoB0141
Bhi04G000237Cucurbita pepo (Zucchini)cpewgoB0684
Bhi04G000237Cucurbita pepo (Zucchini)cpewgoB1028
Bhi04G000237Wild cucumber (PI 183967)cpiwgoB159
Bhi04G000237Wild cucumber (PI 183967)cpiwgoB319
Bhi04G000237Cucumber (Chinese Long) v3cucwgoB324
Bhi04G000237Cucumber (Chinese Long) v3cucwgoB169
Bhi04G000237Cucumber (Chinese Long) v2cuwgoB162
Bhi04G000237Cucumber (Chinese Long) v2cuwgoB318
Bhi04G000237Bottle gourd (USVL1VR-Ls)lsiwgoB591
Bhi04G000237Melon (DHL92) v3.6.1medwgoB321
Bhi04G000237Melon (DHL92) v3.5.1mewgoB322
Bhi04G000237Watermelon (Charleston Gray)wcgwgoB452
Bhi04G000237Watermelon (Charleston Gray)wcgwgoB612
Bhi04G000237Watermelon (97103) v2wgowmbB301
Bhi04G000237Watermelon (97103) v2wgowmbB313
Bhi04G000237Watermelon (97103) v1wgowmB297
Bhi04G000237Watermelon (97103) v1wgowmB329
Bhi04G000237Silver-seed gourdcarwgoB0231
Bhi04G000237Silver-seed gourdcarwgoB1093
Bhi04G000237Silver-seed gourdcarwgoB1143