Bhi04G000201 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000201
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat-containing protein
Location	chr4 : 5447337 .. 5447534 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAAGGGATGAGTTAACGTGGACGCCATTGATTACTTGGTATGGACAGAATGATGATCTGAATGAGGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGGTAGCATGGAAAGCCATGTTCTTTGGATATGTGCACCGTGGTCTTTTCGAGGATGCCTCCAAACACTCTTTATGGAAATGCGTTTGA

mRNA sequence

ATGGCAGGAAGGGATGAGTTAACGTGGACGCCATTGATTACTTGGTATGGACAGAATGATGATCTGAATGAGGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGGTAGCATGGAAAGCCATGTTCTTTGGATATGTGCACCGTGGTCTTTTCGAGGATGCCTCCAAACACTCTTTATGGAAATGCGTTTGA

Coding sequence (CDS)

ATGGCAGGAAGGGATGAGTTAACGTGGACGCCATTGATTACTTGGTATGGACAGAATGATGATCTGAATGAGGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGGTAGCATGGAAAGCCATGTTCTTTGGATATGTGCACCGTGGTCTTTTCGAGGATGCCTCCAAACACTCTTTATGGAAATGCGTTTGA

Protein sequence

MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASKHSLWKCV

Homology

[Close]

BLAST of Bhi04G000201 vs. TAIR10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.7e-04
Identity = 20/47 (42.55%), Postives = 25/47 (53.19%), Query Frame = 0


Query: 10  TPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           T L T Y + +++  AR L D   EK   +W AM  GY   GL EDA
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404

[Close]

BLAST of Bhi04G000201 vs. TAIR10
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 40.4 bits (93), Expect = 4.9e-04
Identity = 17/53 (32.08%), Postives = 29/53 (54.72%), Query Frame = 0


Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           +D      L+ +Y +  +L+ AR + D M+E+  V+W +M  GY  R   +DA
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219

[Close]

BLAST of Bhi04G000201 vs. TAIR10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 40.0 bits (92), Expect = 6.4e-04
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 10  TPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           T L+ +YG+ D L +AR +LD M EK  V+W AM   Y   G   +A
Sbjct: 91  TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEA 137

[Close]

BLAST of Bhi04G000201 vs. TrEMBL
Match: tr|A0A2K2BCH1|A0A2K2BCH1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G027800v3 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +N+DL+ A+  L+  ++KLGVAW AM  GY HRGL+ +A
Sbjct: 218 MPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEA 273

[Close]

BLAST of Bhi04G000201 vs. TrEMBL
Match: tr|I1NHZ4|I1NHZ4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G200100 PE=4 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           RDE  WT +I  Y +NDDL  AR LL+ MT+ + VAW AM  GYVHRG +E+A
Sbjct: 206 RDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEA 258

[Close]

BLAST of Bhi04G000201 vs. TrEMBL
Match: tr|I1LCF4|I1LCF4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804309 PE=4 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           RDE  WT +I  Y +NDDL  AR LL+ MT+ + VAW AM  GYVHRG +E+A
Sbjct: 211 RDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEA 263

[Close]

BLAST of Bhi04G000201 vs. TrEMBL
Match: tr|A0A2C9UYB2|A0A2C9UYB2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G038200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLD--TMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +NDDL+ AR   D   M E++ VAW AM  GY+HRGL+++A
Sbjct: 180 MVERDELSWTTIITGYVKNDDLDAAREFFDGGGMCEEMVVAWNAMISGYMHRGLYKEA 237

[Close]

BLAST of Bhi04G000201 vs. TrEMBL
Match: tr|A0A2C9UY88|A0A2C9UY88_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G038200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLD--TMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +NDDL+ AR   D   M E++ VAW AM  GY+HRGL+++A
Sbjct: 238 MVERDELSWTTIITGYVKNDDLDAAREFFDGGGMCEEMVVAWNAMISGYMHRGLYKEA 295

[Close]

BLAST of Bhi04G000201 vs. NCBI nr
Match: XP_011028950.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Populus euphratica] >XP_011028951.1 PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Populus euphratica] >XP_011028952.1 PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Populus euphratica])

HSP 1 Score: 72.0 bits (175), Expect = 8.3e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +N+DL+ A+  L+  +EKLGVAW AM  GY HRGL+ +A
Sbjct: 218 MPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSEKLGVAWNAMISGYAHRGLYLEA 273

[Close]

BLAST of Bhi04G000201 vs. NCBI nr
Match: XP_024450567.1 (pentatricopeptide repeat-containing protein At1g25360 [Populus trichocarpa] >XP_002302000.3 pentatricopeptide repeat-containing protein At1g25360 [Populus trichocarpa] >XP_024450568.1 pentatricopeptide repeat-containing protein At1g25360 [Populus trichocarpa] >PNT47478.1 hypothetical protein POPTR_002G027800v3 [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +N+DL+ A+  L+  ++KLGVAW AM  GY HRGL+ +A
Sbjct: 218 MPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEA 273

[Close]

BLAST of Bhi04G000201 vs. NCBI nr
Match: XP_003535453.2 (pentatricopeptide repeat-containing protein At1g25360 [Glycine max] >KRH34548.1 hypothetical protein GLYMA_10G190600 [Glycine max])

HSP 1 Score: 68.9 bits (167), Expect = 7.0e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           RDE  WT +I  Y +NDDL  AR LL+ MT+ + VAW AM  GYVHRG +E+A
Sbjct: 211 RDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEA 263

[Close]

BLAST of Bhi04G000201 vs. NCBI nr
Match: KRG92255.1 (hypothetical protein GLYMA_20G200100 [Glycine max])

HSP 1 Score: 68.9 bits (167), Expect = 7.0e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           RDE  WT +I  Y +NDDL  AR LL+ MT+ + VAW AM  GYVHRG +E+A
Sbjct: 206 RDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEA 258

[Close]

BLAST of Bhi04G000201 vs. NCBI nr
Match: OAY36670.1 (hypothetical protein MANES_11G038200 [Manihot esculenta])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLD--TMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +NDDL+ AR   D   M E++ VAW AM  GY+HRGL+++A
Sbjct: 238 MVERDELSWTTIITGYVKNDDLDAAREFFDGGGMCEEMVVAWNAMISGYMHRGLYKEA 295

The following BLAST results are available for this feature:

BLAST of Bhi04G000201 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G000201 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30700.1	1.7e-04	42.55	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G22690.1	4.9e-04	32.08	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repe...	[more]
AT3G13770.1	6.4e-04	42.55	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Bhi04G000201 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K2BCH1\|A0A2K2BCH1_POPTR	1.6e-09	53.57	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G027800v3 PE=...	[more]
tr\|I1NHZ4\|I1NHZ4_SOYBN	4.7e-09	56.60	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G200100 PE=4 SV=2	[more]
tr\|I1LCF4\|I1LCF4_SOYBN	4.7e-09	56.60	Uncharacterized protein OS=Glycine max OX=3847 GN=100804309 PE=4 SV=2	[more]
tr\|A0A2C9UYB2\|A0A2C9UYB2_MANES	1.0e-08	53.45	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G038200 PE=4 SV=...	[more]
tr\|A0A2C9UY88\|A0A2C9UY88_MANES	1.0e-08	53.45	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G038200 PE=4 SV=...	[more]

BLAST of Bhi04G000201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011028950.1	8.3e-10	55.36	PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Populus euphra...	[more]
XP_024450567.1	2.4e-09	53.57	pentatricopeptide repeat-containing protein At1g25360 [Populus trichocarpa] >XP_...	[more]
XP_003535453.2	7.0e-09	56.60	pentatricopeptide repeat-containing protein At1g25360 [Glycine max] >KRH34548.1 ...	[more]
KRG92255.1	7.0e-09	56.60	hypothetical protein GLYMA_20G200100 [Glycine max]	[more]
OAY36670.1	1.6e-08	53.45	hypothetical protein MANES_11G038200 [Manihot esculenta]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
biological_process	GO:0030036	actin cytoskeleton organization
cellular_component	GO:0030054	cell junction
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003779	actin binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000201	Bhi04M000201	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 8..35 e-value: 3.3E-4 score: 20.6 coord: 38..57 e-value: 0.26 score: 11.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 8..35 e-value: 3.3E-4 score: 18.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 2..62 e-value: 2.5E-6 score: 29.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G000201	Lsi08G013490	Bottle gourd (USVL1VR-Ls)	lsiwgoB607

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000201	Wax gourd	wgowgoB081
Bhi04G000201	Cucumber (Gy14) v1	cgywgoB683
Bhi04G000201	Cucumber (Gy14) v1	cgywgoB315
Bhi04G000201	Cucumber (Gy14) v2	cgybwgoB149
Bhi04G000201	Cucumber (Gy14) v2	cgybwgoB304
Bhi04G000201	Cucumber (Gy14) v2	cgybwgoB647
Bhi04G000201	Cucurbita maxima (Rimu)	cmawgoB0130
Bhi04G000201	Cucurbita maxima (Rimu)	cmawgoB0208
Bhi04G000201	Cucurbita maxima (Rimu)	cmawgoB0571
Bhi04G000201	Cucurbita maxima (Rimu)	cmawgoB0663
Bhi04G000201	Cucurbita maxima (Rimu)	cmawgoB0936
Bhi04G000201	Cucurbita moschata (Rifu)	cmowgoB0011
Bhi04G000201	Cucurbita moschata (Rifu)	cmowgoB0125
Bhi04G000201	Cucurbita moschata (Rifu)	cmowgoB0203
Bhi04G000201	Cucurbita moschata (Rifu)	cmowgoB0566
Bhi04G000201	Cucurbita moschata (Rifu)	cmowgoB0662
Bhi04G000201	Cucurbita moschata (Rifu)	cmowgoB0938
Bhi04G000201	Cucurbita pepo (Zucchini)	cpewgoB0134
Bhi04G000201	Cucurbita pepo (Zucchini)	cpewgoB0861
Bhi04G000201	Cucurbita pepo (Zucchini)	cpewgoB0982
Bhi04G000201	Cucurbita pepo (Zucchini)	cpewgoB1041
Bhi04G000201	Wild cucumber (PI 183967)	cpiwgoB153
Bhi04G000201	Wild cucumber (PI 183967)	cpiwgoB315
Bhi04G000201	Wild cucumber (PI 183967)	cpiwgoB688
Bhi04G000201	Cucumber (Chinese Long) v3	cucwgoB162
Bhi04G000201	Cucumber (Chinese Long) v3	cucwgoB320
Bhi04G000201	Cucumber (Chinese Long) v3	cucwgoB701
Bhi04G000201	Cucumber (Chinese Long) v2	cuwgoB155
Bhi04G000201	Cucumber (Chinese Long) v2	cuwgoB313
Bhi04G000201	Cucumber (Chinese Long) v2	cuwgoB676
Bhi04G000201	Bottle gourd (USVL1VR-Ls)	lsiwgoB123
Bhi04G000201	Bottle gourd (USVL1VR-Ls)	lsiwgoB359
Bhi04G000201	Melon (DHL92) v3.6.1	medwgoB231
Bhi04G000201	Melon (DHL92) v3.6.1	medwgoB343
Bhi04G000201	Melon (DHL92) v3.6.1	medwgoB415
Bhi04G000201	Melon (DHL92) v3.5.1	mewgoB229
Bhi04G000201	Melon (DHL92) v3.5.1	mewgoB344
Bhi04G000201	Melon (DHL92) v3.5.1	mewgoB413
Bhi04G000201	Watermelon (Charleston Gray)	wcgwgoB282
Bhi04G000201	Watermelon (Charleston Gray)	wcgwgoB459
Bhi04G000201	Watermelon (Charleston Gray)	wcgwgoB630
Bhi04G000201	Watermelon (97103) v2	wgowmbB298
Bhi04G000201	Watermelon (97103) v2	wgowmbB308
Bhi04G000201	Watermelon (97103) v2	wgowmbB331
Bhi04G000201	Watermelon (97103) v1	wgowmB315
Bhi04G000201	Watermelon (97103) v1	wgowmB336
Bhi04G000201	Watermelon (97103) v1	wgowmB343
Bhi04G000201	Silver-seed gourd	carwgoB0118
Bhi04G000201	Silver-seed gourd	carwgoB1091
Bhi04G000201	Silver-seed gourd	carwgoB1093
Bhi04G000201	Silver-seed gourd	carwgoB1146