Bhi04G000047 (gene) Wax gourd

Overview
NameBhi04G000047
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr4 : 1541288 .. 1541844 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTGTCGATCGATTCTCGGAAATCCGCCATTGTCCATGGAGATTGAAAGCAGAGCTTAAATTATTGGAAATCCAGAAGGTTCGAGTTTCTTCTTTCGAATTTGCAGAGTGGCTGTTTTGAAGAACGATTGAATGAAAGATGATTTTGTAGGAACTTGTCTCGAAGAACAGAAAATTGAAGGTTCTGAAACAGAGAAAAGAGACTCTTGAAGATGAAGTTGGGTATGAATATGATCTTTTGACATCCTTAAAAGTTTTCTAATGGCATTCCTGAATCCTGAACCCCTCCTTTTGTTTCAAATTTCGAAAAGATTTTTGAGACGAAGACTCTGGTACCTGCAGAAATTACAGAACCGTAGTCATGATTTAGAAAACTTGCCCATGGTTCTGGAATCGAAACAGAATCTGGTATGAACCCATATGACATTTCTTTCTTCTTCACTATAGATAGATTGATTGAAAAAATTTAATGGAGGACTGAGATTGCAGGATGGTGTCGAGGAAGATAAGGAGAAGCCTCCGGATAATGCATACACAAAATCGTTTGTTTAA

mRNA sequence

ATGAAGAGTGTCGATCGATTCTCGGAAATCCGCCATTGTCCATGGAGATTGAAAGCAGAGCTTAAATTATTGGAAATCCAGAAGGAACTTGTCTCGAAGAACAGAAAATTGAAGGTTCTGAAACAGAGAAAAGAGACTCTTGAAGATGAAGTTGGATTTTTGAGACGAAGACTCTGGTACCTGCAGAAATTACAGAACCGTAGTCATGATTTAGAAAACTTGCCCATGGTTCTGGAATCGAAACAGAATCTGGATGGTGTCGAGGAAGATAAGGAGAAGCCTCCGGATAATGCATACACAAAATCGTTTGTTTAA

Coding sequence (CDS)

ATGAAGAGTGTCGATCGATTCTCGGAAATCCGCCATTGTCCATGGAGATTGAAAGCAGAGCTTAAATTATTGGAAATCCAGAAGGAACTTGTCTCGAAGAACAGAAAATTGAAGGTTCTGAAACAGAGAAAAGAGACTCTTGAAGATGAAGTTGGATTTTTGAGACGAAGACTCTGGTACCTGCAGAAATTACAGAACCGTAGTCATGATTTAGAAAACTTGCCCATGGTTCTGGAATCGAAACAGAATCTGGATGGTGTCGAGGAAGATAAGGAGAAGCCTCCGGATAATGCATACACAAAATCGTTTGTTTAA

Protein sequence

MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHDLENLPMVLESKQNLDGVEEDKEKPPDNAYTKSFV
Homology
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BLAST of Bhi04G000047 vs. NCBI nr
Match: XP_022132126.1 (uncharacterized protein LOC111005070 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 7.3e-16
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0 

Query: 24  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHD--LENLPMVLESK 83
           LE+QK+ VSK RKL+VL+QRKETL  EV FLR+RL YLQKLQNR HD   E+LPMVLE+K
Sbjct: 37  LEVQKDFVSKKRKLQVLRQRKETLGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETK 96

Query: 84  QNLDGVEEDK 92
           QNLDGVEE+K
Sbjct: 97  QNLDGVEEEK 106

The following BLAST results are available for this feature:
BLAST of Bhi04G000047 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04G000047 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04G000047 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi04G000047 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132126.17.3e-1674.29uncharacterized protein LOC111005070 [Momordica charantia][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000047Bhi04M000047mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..104
NoneNo IPR availablePANTHERPTHR34807:SF6SUBFAMILY NOT NAMEDcoord: 23..85
NoneNo IPR availablePANTHERPTHR34807FAMILY NOT NAMEDcoord: 23..85

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi04G000047Wax gourdwgowgoB091
Bhi04G000047Cucumber (Gy14) v1cgywgoB313
Bhi04G000047Cucumber (Gy14) v1cgywgoB548
Bhi04G000047Cucumber (Gy14) v2cgybwgoB151
Bhi04G000047Cucumber (Gy14) v2cgybwgoB369
Bhi04G000047Cucurbita maxima (Rimu)cmawgoB0017
Bhi04G000047Cucurbita maxima (Rimu)cmawgoB0195
Bhi04G000047Cucurbita maxima (Rimu)cmawgoB0945
Bhi04G000047Cucurbita moschata (Rifu)cmowgoB0009
Bhi04G000047Cucurbita moschata (Rifu)cmowgoB0191
Bhi04G000047Cucurbita moschata (Rifu)cmowgoB0945
Bhi04G000047Cucurbita pepo (Zucchini)cpewgoB0142
Bhi04G000047Cucurbita pepo (Zucchini)cpewgoB0980
Bhi04G000047Cucurbita pepo (Zucchini)cpewgoB1029
Bhi04G000047Wild cucumber (PI 183967)cpiwgoB154
Bhi04G000047Wild cucumber (PI 183967)cpiwgoB390
Bhi04G000047Cucumber (Chinese Long) v3cucwgoB163
Bhi04G000047Cucumber (Chinese Long) v3cucwgoB392
Bhi04G000047Cucumber (Chinese Long) v2cuwgoB156
Bhi04G000047Cucumber (Chinese Long) v2cuwgoB387
Bhi04G000047Bottle gourd (USVL1VR-Ls)lsiwgoB592
Bhi04G000047Melon (DHL92) v3.6.1medwgoB342
Bhi04G000047Melon (DHL92) v3.5.1mewgoB343
Bhi04G000047Melon (DHL92) v3.5.1mewgoB587
Bhi04G000047Watermelon (Charleston Gray)wcgwgoB458
Bhi04G000047Watermelon (Charleston Gray)wcgwgoB613
Bhi04G000047Watermelon (97103) v2wgowmbB314
Bhi04G000047Watermelon (97103) v1wgowmB298
Bhi04G000047Watermelon (97103) v1wgowmB335
Bhi04G000047Silver-seed gourdcarwgoB0173
Bhi04G000047Silver-seed gourdcarwgoB0750
Bhi04G000047Silver-seed gourdcarwgoB1142