Bhi03G002205 (gene) Wax gourd

Overview
NameBhi03G002205
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3 : 66585340 .. 66585934 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTATTCATACCAAGGACGACAGCCTCCTGCACAATCAGTTGTCATGGCTGCCTCTGCAAATTCAAATGATATATCTTCTTCTACAAATCCTCAAGTTTGGTTATCTGATATAGGATATGCAAATTCTCATCTTACAAATGATCTTGCCAATCTCAATTTGTCTTCAGCATATAATGGAGAGGAGTTTATTACCGCTAGAAATGGTCAATCACTACCGATTACTCATCAAGGTTGCAGTAAAATTCTCACTCCTGATTCCTCTTTCAATCTTTCTATACTTTTTCATTTATCTACTAACTCCAAAAATCTTCTTTTTGTCTGCTTAGATAACAATTACTCCTTTATCTTTAATGCTTCTTACTTCACCATCCAGGACAATGTTATAGGAAAAACGTTATTCCAAGGGCCTAACATAAACGACCACTATTCTCTTTCTACTTATCCATCCCACATAGCACAAGTAGATCTTCAAGCTCAAGTTGGTATTCAAGATTCTATTGTTTTGTGGCACAATAGGTTAGATCATCCTTCAAATTCTATTTTAAAGCATGTTCTTCAGTTCATTAATATTCCTACATTTGAAACTTTAA

mRNA sequence

ATGAATTATTCATACCAAGGACGACAGCCTCCTGCACAATCAGTTGTCATGGCTGCCTCTGCAAATTCAAATGATATATCTTCTTCTACAAATCCTCAAGTTTGGTTATCTGATATAGGATATGCAAATTCTCATCTTACAAATGATCTTGCCAATCTCAATTTGTCTTCAGCATATAATGGAGAGGAGTTTATTACCGCTAGAAATGGTCAATCACTACCGATTACTCATCAAGATAACAATTACTCCTTTATCTTTAATGCTTCTTACTTCACCATCCAGGACAATGTTATAGGAAAAACGTTATTCCAAGGGCCTAACATAAACGACCACTATTCTCTTTCTACTTATCCATCCCACATAGCACAAGTAGATCTTCAAGCTCAAGTTGGTATTCAAGATTCTATTGTTTTGTGGCACAATAGCATGTTCTTCAGTTCATTAATATTCCTACATTTGAAACTTTAA

Coding sequence (CDS)

ATGAATTATTCATACCAAGGACGACAGCCTCCTGCACAATCAGTTGTCATGGCTGCCTCTGCAAATTCAAATGATATATCTTCTTCTACAAATCCTCAAGTTTGGTTATCTGATATAGGATATGCAAATTCTCATCTTACAAATGATCTTGCCAATCTCAATTTGTCTTCAGCATATAATGGAGAGGAGTTTATTACCGCTAGAAATGGTCAATCACTACCGATTACTCATCAAGATAACAATTACTCCTTTATCTTTAATGCTTCTTACTTCACCATCCAGGACAATGTTATAGGAAAAACGTTATTCCAAGGGCCTAACATAAACGACCACTATTCTCTTTCTACTTATCCATCCCACATAGCACAAGTAGATCTTCAAGCTCAAGTTGGTATTCAAGATTCTATTGTTTTGTGGCACAATAGCATGTTCTTCAGTTCATTAATATTCCTACATTTGAAACTTTAA

Protein sequence

MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYNGEEFITARNGQSLPITHQDNNYSFIFNASYFTIQDNVIGKTLFQGPNINDHYSLSTYPSHIAQVDLQAQVGIQDSIVLWHNSMFFSSLIFLHLKL
Homology
[Close]
BLAST of Bhi03G002205 vs. TrEMBL
Match: tr|A0A2N9HLR0|A0A2N9HLR0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40770 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           M++++QG+ PP +   MA S+N    +SS+N   W+SD G A  H T DLANL  +  YN
Sbjct: 284 MDFAFQGKHPPTKLAAMAFSSN----ASSSN--CWVSDTG-ATDHFTPDLANLQQARDYN 343

Query: 61  GEEFITARNGQSLPITHQDNNYSFIFNASYFTIQDNVIGKTLFQGPN 108
           G + +T  NGQ LPITH DNN  F F+AS F+IQD   GK L++G N
Sbjct: 344 GNDAVTVGNGQQLPITHIDNNCCFHFDASKFSIQDIPSGKVLYKGFN 383

[Close]
BLAST of Bhi03G002205 vs. TrEMBL
Match: tr|A0A2N9HCI9|A0A2N9HCI9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39959 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.8e-14
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           M+++YQGR PPA+   MA+++N     +S   + WL+D G A  HLT +L NL + + Y 
Sbjct: 302 MDFAYQGRHPPAKLAAMASTSN-----NSQGGETWLTDTG-ATDHLTANLNNLTVQNPYK 361

Query: 61  GEEFITARNGQSLPITH--------QDNNYSFIFNASYFTIQDNVIGKTLFQGPNINDHY 120
           G + +   NGQS+PI +         DNN S  F+++ F IQD   GK L++G + N  Y
Sbjct: 362 GSDQVEVGNGQSIPINNTGNVHKLCTDNNCSCYFDSNKFFIQDLPSGKVLYKGLSRNGLY 421

Query: 121 SLSTYPSH-------IAQVDLQAQVGIQDSIVLWHNSM 144
            + T+PS         A   + A +  ++   LWH  +
Sbjct: 422 PIHTHPSSSVSTPSVTASSSVSAFLSFKNKWQLWHQRL 453

[Close]
BLAST of Bhi03G002205 vs. TrEMBL
Match: tr|A0A2N9GQ99|A0A2N9GQ99_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32509 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           M+++YQG+ PP +   +AA AN++++  + N + WL+D G A+ H+T + +NLN  + Y+
Sbjct: 290 MDFAYQGKNPPTK---LAAMANASNLQYTQNSETWLTDSG-ASDHITANASNLNTQAPYH 349

Query: 61  GEEFITARNGQSLPITHQDNNYSFIFNASYFTIQDNVIGKTLFQGPNINDHYSLSTYPSH 120
           G E +T  NGQ+LPI   DNN S +F+A    IQD   G+ L++G + +       YP H
Sbjct: 350 GSEQVTVGNGQNLPIQSIDNNCSCLFDAQKLLIQDLPTGRLLYKGLSKD-----GVYPIH 409

Query: 121 IAQ----VDLQAQVGIQDSI---VLWHNSMFFSSLIFLH 153
            +Q    V  ++      S    +LWH+ +   S   LH
Sbjct: 410 SSQFCRFVSTKSACLASSSAQKWLLWHSRLGHPSAKVLH 439

[Close]
BLAST of Bhi03G002205 vs. TrEMBL
Match: tr|A0A2N9FKJ8|A0A2N9FKJ8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15492 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           M+++YQGR PPA+   MA+++N     +S   + WL+D G A  HLT +L NL + + Y 
Sbjct: 296 MDFAYQGRHPPAKLAAMASTSN-----NSQGGETWLTDTG-ATDHLTANLNNLTVQNPYK 355

Query: 61  GEEFITARNGQSLPITH--------QDNNYSFIFNASYFTIQDNVIGKTLFQGPNINDHY 120
           G + +   NGQS+PI +         DNN S  F+++ F IQD   GK L++G + N  Y
Sbjct: 356 GSDQVAVGNGQSIPINNTGNVHKLCTDNNCSCYFDSNKFLIQDLPSGKVLYKGLSRNGLY 415

Query: 121 SLSTY-------PSHIAQVDLQAQVGIQDSIVLWHNSM 144
            + T+       PS  A   + A +  ++   LWH  +
Sbjct: 416 PIHTHPPSSVSTPSVTASSSVSAFLSSKNKWQLWHQRL 447

[Close]
BLAST of Bhi03G002205 vs. TrEMBL
Match: tr|A0A2N9FQ63|A0A2N9FQ63_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20749 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 54/142 (38.03%), Postives = 72/142 (50.70%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           MNY+YQGR PPA+   MA +      S  +N   W+SD G A  H T DL NL  + AY 
Sbjct: 97  MNYAYQGRHPPAKLAAMATAT-----SPDSNQTTWISDTG-ATDHFTPDLHNLPDNQAYT 156

Query: 61  GEEFITARNGQSLPITHQDNNYSFIFNASYFTIQDNVIGKTLFQG--------------P 120
             + ++  NG  LPI+H DN+ SF F+AS F I+D   GK L+ G              P
Sbjct: 157 DSQLVSVGNGNQLPISHIDNHCSFSFDASRFQIRDCHTGKPLYNGLSKDGLYPIHGLSLP 216

Query: 121 NINDHYSLSTYPSHIAQVDLQA 129
            +    SL+++ S  AQ    A
Sbjct: 217 FLKSRLSLASHFSSTAQSSFSA 232

[Close]
BLAST of Bhi03G002205 vs. NCBI nr
Match: XP_022158189.1 (uncharacterized protein LOC111024722 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 9.5e-12
Identity = 59/170 (34.71%), Postives = 81/170 (47.65%), Query Frame = 0 

Query: 17  MAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYNGEEFITARNGQSLPIT 76
           MA +A +   SS+T+   WLSD G  N+H+TNDL NLNL  +YNGEEF+T  NGQSL I+
Sbjct: 1   MAVNAMTPSSSSNTHNNFWLSDSG-CNAHVTNDLDNLNLVDSYNGEEFVTVGNGQSLNIS 60

Query: 77  HQ-----------------------------------DNNYSFIFNASYFTIQDNVIGKT 136
           H                                    DN+  F++++ +F IQD V   T
Sbjct: 61  HTGSGILSASSHAFTISNVLHAPDLATNLLSVHKFCLDNHCIFVYDSDWFLIQDKVTDTT 120

Query: 137 LFQGPNINDHY---SLSTYPS-----HIAQVDLQAQVGIQDSIVLWHNSM 144
           L++G ++N  Y   S ST  S     H     L A+ G      LWH+ +
Sbjct: 121 LYKGKSVNGLYPIPSSSTLSSARNELHPKNCALLAKAG----SYLWHHRL 165

[Close]
BLAST of Bhi03G002205 vs. NCBI nr
Match: XP_018811560.1 (PREDICTED: uncharacterized protein LOC108984155 [Juglans regia])

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 54/182 (29.67%), Postives = 82/182 (45.05%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           M+Y+YQGR PPAQ   M A +N     S +N   W +D G AN+HLT  L NL+L   Y 
Sbjct: 259 MDYAYQGRHPPAQLAAMIAQSN-----SFSNDDTWFADSG-ANAHLTPKLENLSLHEPYK 318

Query: 61  GEEFITARNGQSLPITH-----------------------------------QDNNYSFI 120
           G E IT  NG  L I +                                   +DN+Y FI
Sbjct: 319 GNENITVGNGTGLAIHNIGSLTLHTSHTPFKLSHVLHCPSASANLLSINQFCKDNSYFFI 378

Query: 121 FNASYFTIQDNVIGKTLFQGPNINDHYSLSTYPSHIAQVDLQAQVGIQDSIVLWHNSMFF 148
              S F ++D   G+ L QG + +  Y ++    + + + L A  G++  + +W++ +  
Sbjct: 379 LTDSSFYVKDKHTGRILLQGRSKDGLYPINQNKINKSSL-LTAMFGVKAPVNVWYSRLGH 433

[Close]
BLAST of Bhi03G002205 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-09
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           MN+SYQG+ PP+Q V MA ++ ++ I         LSD G  N H+TN+LANLNLS+ YN
Sbjct: 260 MNFSYQGQHPPSQLVAMAINSMNSQIFGENTNNFLLSDSG-CNVHMTNELANLNLSNNYN 319

Query: 61  GEEFITARNGQSLPI 76
           GEE +T  NGQ + I
Sbjct: 320 GEETVTVGNGQPINI 333

[Close]
BLAST of Bhi03G002205 vs. NCBI nr
Match: XP_018819774.1 (PREDICTED: uncharacterized protein LOC108990302, partial [Juglans regia])

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-09
Identity = 54/180 (30.00%), Postives = 76/180 (42.22%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           MNYS+QGR PP   V   A AN+  +    N   W +D G AN H+T+DLANL  S  Y 
Sbjct: 304 MNYSFQGRHPPTDLVATVAEANTTYL----NQHQWYADSG-ANVHVTSDLANLATSQPYE 363

Query: 61  GEEFITARNGQSLPITH-----------------------------------QDNNYSFI 120
           G++F+   NG  L I+                                    +DNN  F 
Sbjct: 364 GDDFVGVGNGTGLTISRTGTASIQTLSSTLTLSNVAYCPHASAHLLSINKFCKDNNVLFE 423

Query: 121 FNASYFTIQDNVIGKTLFQGPNINDHYSLSTYPSHIAQVD------LQAQVGIQDSIVLW 140
              S F+++D + G TL  GP+ N       YP ++ Q+       L   +G++ S   W
Sbjct: 424 LIGSNFSVKDILTGDTLLTGPSAN-----GLYPINLRQLSSSKFHALTMTIGVKASTSTW 473

[Close]
BLAST of Bhi03G002205 vs. NCBI nr
Match: CAN65855.1 (hypothetical protein VITISV_013124 [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 9.8e-09
Identity = 50/159 (31.45%), Postives = 75/159 (47.17%), Query Frame = 0 

Query: 1   MNYSYQGRQPPAQSVVMAASANSNDISSSTNPQVWLSDIGYANSHLTNDLANLNLSSAYN 60
           MNY++QGR PP + V M   AN+  +    N   W  D G AN H+T+D  NL +S  Y 
Sbjct: 305 MNYAFQGRHPPIELVAMVVEANTTYL----NQHQWYVDSG-ANIHVTSDTVNLAISQPYE 364

Query: 61  GEEFITARNGQ------SLPITHQDNNYSFIFNASYFTIQDNVIGKTLFQGPNINDHY-- 120
           G + +   NG       S+   +++NN  F    S F+++D   G+TL  G +    Y  
Sbjct: 365 GTDTVGVGNGAASAHLLSINKFYKNNNVLFELTGSDFSVKDLKTGETLMMGSSDRGLYPI 424

Query: 121 ---SLSTYPSHIAQVDLQAQVGIQDSIVLWHNSMFFSSL 149
               LS+   H+        VG++ S  +WH  +   SL
Sbjct: 425 NLQQLSSSKFHV----FSMTVGVKASTAIWHCRLRLPSL 454

The following BLAST results are available for this feature:
BLAST of Bhi03G002205 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi03G002205 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi03G002205 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2N9HLR0|A0A2N9HLR0_FAGSY3.6e-1548.60Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40770 PE=4 SV=1[more]
tr|A0A2N9HCI9|A0A2N9HCI9_FAGSY8.8e-1434.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39959 PE=4 SV=1[more]
tr|A0A2N9GQ99|A0A2N9GQ99_FAGSY1.1e-1334.59Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32509 PE=4 SV=1[more]
tr|A0A2N9FKJ8|A0A2N9FKJ8_FAGSY1.5e-1334.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15492 PE=4 SV=1[more]
tr|A0A2N9FQ63|A0A2N9FQ63_FAGSY2.0e-1338.03Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20749 PE=4 SV=1[more]
BLAST of Bhi03G002205 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158189.19.5e-1234.71uncharacterized protein LOC111024722 [Momordica charantia][more]
XP_018811560.12.6e-0929.67PREDICTED: uncharacterized protein LOC108984155 [Juglans regia][more]
XP_016902697.13.4e-0950.67PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo][more]
XP_018819774.13.4e-0930.00PREDICTED: uncharacterized protein LOC108990302, partial [Juglans regia][more]
CAN65855.19.8e-0931.45hypothetical protein VITISV_013124 [Vitis vinifera][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M002205Bhi03M002205mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G002205Cucumber (Gy14) v1cgywgoB712
Bhi03G002205Cucumber (Gy14) v2cgybwgoB390
Bhi03G002205Cucurbita maxima (Rimu)cmawgoB0795
Bhi03G002205Cucurbita maxima (Rimu)cmawgoB1075
Bhi03G002205Cucurbita moschata (Rifu)cmowgoB0788
Bhi03G002205Cucurbita moschata (Rifu)cmowgoB1068
Bhi03G002205Cucurbita pepo (Zucchini)cpewgoB0104
Bhi03G002205Cucurbita pepo (Zucchini)cpewgoB0601
Bhi03G002205Wild cucumber (PI 183967)cpiwgoB411
Bhi03G002205Cucumber (Chinese Long) v3cucwgoB413
Bhi03G002205Cucumber (Chinese Long) v2cuwgoB410
Bhi03G002205Bottle gourd (USVL1VR-Ls)lsiwgoB173
Bhi03G002205Melon (DHL92) v3.5.1mewgoB642
Bhi03G002205Watermelon (Charleston Gray)wcgwgoB387
Bhi03G002205Watermelon (97103) v2wgowmbB427
Bhi03G002205Watermelon (97103) v1wgowmB441
Bhi03G002205Silver-seed gourdcarwgoB0373
Bhi03G002205Silver-seed gourdcarwgoB1000