Bhi03G002140 (gene) Wax gourd

Overview
NameBhi03G002140
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRNA-directed DNA polymerase
Locationchr3 : 63506804 .. 63507049 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACGAAATTTCAAGTTGAAACCTCGCAAAATAGGTCCATACAAAACCATGAGGAAAATCGGTGATAATGTTCATGTTTTGGACTTACCACCATCAATAATCCACTCGTCCTATGCCTTGAAAGTTTCAGATCGGACTGAATACCGCCCGCCACTTGAATCTGAAATGGAGAAGGCTAGCATGAAAGCGACACTCTTGCCAGACGAAGCCGGCCACGCCGGTTGCTCTCAGCCGCTGCGTTGA

mRNA sequence

ATGAGACGAAATTTCAAGTTGAAACCTCGCAAAATAGGTCCATACAAAACCATGAGGAAAATCGGTGATAATGTTCATGTTTTGGACTTACCACCATCAATAATCCACTCGTCCTATGCCTTGAAAGTTTCAGATCGGACTGAATACCGCCCGCCACTTGAATCTGAAATGGAGAAGGCTAGCATGAAAGCGACACTCTTGCCAGACGAAGCCGGCCACGCCGGTTGCTCTCAGCCGCTGCGTTGA

Coding sequence (CDS)

ATGAGACGAAATTTCAAGTTGAAACCTCGCAAAATAGGTCCATACAAAACCATGAGGAAAATCGGTGATAATGTTCATGTTTTGGACTTACCACCATCAATAATCCACTCGTCCTATGCCTTGAAAGTTTCAGATCGGACTGAATACCGCCCGCCACTTGAATCTGAAATGGAGAAGGCTAGCATGAAAGCGACACTCTTGCCAGACGAAGCCGGCCACGCCGGTTGCTCTCAGCCGCTGCGTTGA

Protein sequence

MRRNFKLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPPLESEMEKASMKATLLPDEAGHAGCSQPLR
Homology
[Close]
BLAST of Bhi03G002140 vs. TrEMBL
Match: tr|A0A2I0X674|A0A2I0X674_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca016516 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-04
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 6   KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPP 53
           KL PRKIGP+  +RKI DN +V+DLP   +H+S    VSD   Y PP
Sbjct: 771 KLSPRKIGPFPVLRKINDNAYVIDLPAE-LHTSSTFNVSDIHSYHPP 816

[Close]
BLAST of Bhi03G002140 vs. TrEMBL
Match: tr|A0A2I0VWB5|A0A2I0VWB5_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 6   KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPPLESEMEKASMKAT 65
           KL PRKIGP+  +RKI DN +V+DL P+ I +S    V+D  EY PP +++    S  +T
Sbjct: 771 KLSPRKIGPFSILRKINDNAYVIDL-PAHIQTSSTFNVADIHEYHPPDDADTTLTSAGST 829

[Close]
BLAST of Bhi03G002140 vs. TrEMBL
Match: tr|A0A2I0XFK1|A0A2I0XFK1_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca014311 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-04
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 6    KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPP 53
            KL PRKIGP+    KI DN +V+DLPP  IH+S    VSD   Y PP
Sbjct: 1268 KLSPRKIGPFPIKSKINDNAYVIDLPPD-IHTSPTFNVSDIYSYHPP 1313

[Close]
BLAST of Bhi03G002140 vs. TrEMBL
Match: tr|A0A2I0VCQ1|A0A2I0VCQ1_9ASPA (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028665 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 6   KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPPLESEMEKASMKAT 65
           KL P+K GP+  +RKI DN +V+DLPP I  SS    V+D   Y PP ES +   S  A 
Sbjct: 203 KLNPKKFGPFPILRKINDNAYVIDLPPHITTSS-TFNVADIYPYHPPDES-ITTVSSSAL 262

Query: 66  LLPDEAG 73
              +E G
Sbjct: 263 KTSEEGG 267

[Close]
BLAST of Bhi03G002140 vs. NCBI nr
Match: PKU83407.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 6   KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPP 53
           KL PRKIGP+  +RKI DN +V+DLP   +H+S    VSD   Y PP
Sbjct: 771 KLSPRKIGPFPVLRKINDNAYVIDLPAE-LHTSSTFNVSDIHSYHPP 816

[Close]
BLAST of Bhi03G002140 vs. NCBI nr
Match: PKU67703.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 6   KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPPLESEMEKASMKAT 65
           KL PRKIGP+  +RKI DN +V+DL P+ I +S    V+D  EY PP +++    S  +T
Sbjct: 771 KLSPRKIGPFSILRKINDNAYVIDL-PAHIQTSSTFNVADIHEYHPPDDADTTLTSAGST 829

[Close]
BLAST of Bhi03G002140 vs. NCBI nr
Match: PKU86669.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 6    KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPP 53
            KL PRKIGP+    KI DN +V+DLPP  IH+S    VSD   Y PP
Sbjct: 1268 KLSPRKIGPFPIKSKINDNAYVIDLPPD-IHTSPTFNVSDIYSYHPP 1313

[Close]
BLAST of Bhi03G002140 vs. NCBI nr
Match: PKU61177.1 (hypothetical protein MA16_Dca028665 [Dendrobium catenatum])

HSP 1 Score: 53.1 bits (126), Expect = 5.0e-04
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 6   KLKPRKIGPYKTMRKIGDNVHVLDLPPSIIHSSYALKVSDRTEYRPPLESEMEKASMKAT 65
           KL P+K GP+  +RKI DN +V+DLPP I  SS    V+D   Y PP ES +   S  A 
Sbjct: 203 KLNPKKFGPFPILRKINDNAYVIDLPPHITTSS-TFNVADIYPYHPPDES-ITTVSSSAL 262

Query: 66  LLPDEAG 73
              +E G
Sbjct: 263 KTSEEGG 267

The following BLAST results are available for this feature:
BLAST of Bhi03G002140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi03G002140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi03G002140 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I0X674|A0A2I0X674_9ASPA1.9e-0453.19RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca016516 ... [more]
tr|A0A2I0VWB5|A0A2I0VWB5_9ASPA2.5e-0445.00RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 ... [more]
tr|A0A2I0XFK1|A0A2I0XFK1_9ASPA2.5e-0455.32RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca014311 ... [more]
tr|A0A2I0VCQ1|A0A2I0VCQ1_9ASPA3.3e-0444.78Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028665 PE=4... [more]
BLAST of Bhi03G002140 vs. NCBI nr
Match NameE-valueIdentityDescription
PKU83407.12.9e-0453.19RNA-directed DNA polymerase [Dendrobium catenatum][more]
PKU67703.13.8e-0445.00RNA-directed DNA polymerase [Dendrobium catenatum][more]
PKU86669.13.8e-0455.32RNA-directed DNA polymerase [Dendrobium catenatum][more]
PKU61177.15.0e-0444.78hypothetical protein MA16_Dca028665 [Dendrobium catenatum][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M002140Bhi03M002140mRNA