Bhi03G001966 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G001966
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr3 : 55535363 .. 55535610 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTGGAGCCTAGTTCTAGGGCTTCAACAGCTAGTGGTTTCCGAGGTTGTGAGCAAGGGAGGTTCACACCTGGAGTGAATGTTTCAGTCCGTCAAGACTTTAAGCGTCGATCTGGTGGCCAATCATCGAGGCAGATGAGTTCAGGTAGTGCCTATCAGAGGCAGAGCCAGAGAGCACCAAATCAGTCTACTAATTCAGTAGCAAGACCGCAGATGAGTCAGGAGTCCATTGTTAGTGAAACCAGGTGA

mRNA sequence

CAGTGGAGCCTAGTTCTAGGGCTTCAACAGCTAGTGGTTTCCGAGGTTGTGAGCAAGGGAGGTTCACACCTGGAGTGAATGTTTCAGTCCGTCAAGACTTTAAGCGTCGATCTGGTGGCCAATCATCGAGGCAGATGAGTTCAGGTAGTGCCTATCAGAGGCAGAGCCAGAGAGCACCAAATCAGTCTACTAATTCAGTAGCAAGACCGCAGATGAGTCAGGAGTCCATTGTTAGTGAAACCAGGTGA

Coding sequence (CDS)

CAGTGGAGCCTAGTTCTAGGGCTTCAACAGCTAGTGGTTTCCGAGGTTGTGAGCAAGGGAGGTTCACACCTGGAGTGAATGTTTCAGTCCGTCAAGACTTTAAGCGTCGATCTGGTGGCCAATCATCGAGGCAGATGAGTTCAGGTAGTGCCTATCAGAGGCAGAGCCAGAGAGCACCAAATCAGTCTACTAATTCAGTAGCAAGACCGCAGATGAGTCAGGAGTCCATTGTTAGTGAAACCAGGTGA

Protein sequence

VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPNQSTNSVARPQMSQESIVSETR

Homology

[Close]

BLAST of Bhi03G001966 vs. TrEMBL
Match: tr|A0A1S4E0X6|A0A1S4E0X6_CUCME (uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-17
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPN 60
           +E S   ST SG RG EQ RFTPGVNVS  QDFKRRSGG+  RQMSSGSAYQRQSQRA +
Sbjct: 204 MELSRGVSTTSGIRGREQRRFTPGVNVSCCQDFKRRSGGKPLRQMSSGSAYQRQSQRASS 263

Query: 61  QSTNSVARPQMSQESIVSETR 82
           QS NSVAR +  Q+S+ SE+R
Sbjct: 264 QSANSVARSRTGQKSVASESR 284

[Close]

BLAST of Bhi03G001966 vs. TrEMBL
Match: tr|A0A1S4E521|A0A1S4E521_CUCME (uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPN 60
           +E S   ST SG RG EQ RFTPGV+VS  QDFKRRSGG+  RQMSSGSAYQRQ QRA +
Sbjct: 180 MELSRGVSTTSGIRGREQRRFTPGVSVSGCQDFKRRSGGKPLRQMSSGSAYQRQHQRASS 239

Query: 61  QSTNSVARPQMSQESIVSETR 82
           QSTNSVAR +  QES+ SE+R
Sbjct: 240 QSTNSVARSRTGQESVASESR 260

[Close]

BLAST of Bhi03G001966 vs. TrEMBL
Match: tr|A0A0A0LAU6|A0A0A0LAU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G463190 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-11
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPN 60
           VE S  AST SGFRG EQ RFTP VN+S  QDFK R GGQ+SR MS GS +QRQSQ  P+
Sbjct: 68  VELSRGASTVSGFRGREQQRFTPRVNISSSQDFKNRFGGQASRNMSYGSVFQRQSQSIPS 127

Query: 61  QSTNS 66
           QST S
Sbjct: 128 QSTRS 132

[Close]

BLAST of Bhi03G001966 vs. TrEMBL
Match: tr|A0A0A0KFN3|A0A0A0KFN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G224010 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.6e-09
Identity = 40/65 (61.54%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 17  EQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPNQSTNSVARPQMSQESI 76
           EQ RFTPGV  S RQDFK RS GQ+SR MS GS +Q QSQ  PNQS  S  RPQ S+E +
Sbjct: 76  EQRRFTPGVKFSSRQDFKNRSRGQASRNMSYGSVFQSQSQSIPNQSNRSTVRPQPSKEFV 135

Query: 77  VSETR 82
            S  R
Sbjct: 136 ASTVR 140

[Close]

BLAST of Bhi03G001966 vs. TrEMBL
Match: tr|A0A1S3CMU0|A0A1S3CMU0_CUCME (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 31  QDFKRRSGGQSSRQMSSGSAYQRQSQRAPNQSTNSVARPQMSQESIVSETR 82
           QDFK RSGG+  RQMSSGSAYQRQSQR       SVAR +  QES+ SE+R
Sbjct: 141 QDFKHRSGGKPLRQMSSGSAYQRQSQRXXXXXXXSVARSRTGQESVASESR 191

[Close]

BLAST of Bhi03G001966 vs. NCBI nr
Match: XP_016901625.1 (PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-17
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPN 60
           +E S   ST SG RG EQ RFTPGVNVS  QDFKRRSGG+  RQMSSGSAYQRQSQRA +
Sbjct: 204 MELSRGVSTTSGIRGREQRRFTPGVNVSCCQDFKRRSGGKPLRQMSSGSAYQRQSQRASS 263

Query: 61  QSTNSVARPQMSQESIVSETR 82
           QS NSVAR +  Q+S+ SE+R
Sbjct: 264 QSANSVARSRTGQKSVASESR 284

[Close]

BLAST of Bhi03G001966 vs. NCBI nr
Match: XP_016903324.1 (PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPN 60
           +E S   ST SG RG EQ RFTPGV+VS  QDFKRRSGG+  RQMSSGSAYQRQ QRA +
Sbjct: 180 MELSRGVSTTSGIRGREQRRFTPGVSVSGCQDFKRRSGGKPLRQMSSGSAYQRQHQRASS 239

Query: 61  QSTNSVARPQMSQESIVSETR 82
           QSTNSVAR +  QES+ SE+R
Sbjct: 240 QSTNSVARSRTGQESVASESR 260

[Close]

BLAST of Bhi03G001966 vs. NCBI nr
Match: KGN58049.1 (hypothetical protein Csa_3G463190 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-11
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   VEPSSRASTASGFRGCEQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPN 60
           VE S  AST SGFRG EQ RFTP VN+S  QDFK R GGQ+SR MS GS +QRQSQ  P+
Sbjct: 68  VELSRGASTVSGFRGREQQRFTPRVNISSSQDFKNRFGGQASRNMSYGSVFQRQSQSIPS 127

Query: 61  QSTNS 66
           QST S
Sbjct: 128 QSTRS 132

[Close]

BLAST of Bhi03G001966 vs. NCBI nr
Match: KGN47237.1 (hypothetical protein Csa_6G224010 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 40/65 (61.54%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 17  EQGRFTPGVNVSVRQDFKRRSGGQSSRQMSSGSAYQRQSQRAPNQSTNSVARPQMSQESI 76
           EQ RFTPGV  S RQDFK RS GQ+SR MS GS +Q QSQ  PNQS  S  RPQ S+E +
Sbjct: 76  EQRRFTPGVKFSSRQDFKNRSRGQASRNMSYGSVFQSQSQSIPNQSNRSTVRPQPSKEFV 135

Query: 77  VSETR 82
            S  R
Sbjct: 136 ASTVR 140

[Close]

BLAST of Bhi03G001966 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 31  QDFKRRSGGQSSRQMSSGSAYQRQSQRAPNQSTNSVARPQMSQESIVSETR 82
           QDFK RSGG+  RQMSSGSAYQRQSQR       SVAR +  QES+ SE+R
Sbjct: 141 QDFKHRSGGKPLRQMSSGSAYQRQSQRXXXXXXXSVARSRTGQESVASESR 191

The following BLAST results are available for this feature:

BLAST of Bhi03G001966 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi03G001966 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi03G001966 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0X6\|A0A1S4E0X6_CUCME	5.8e-17	69.14	uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=...	[more]
tr\|A0A1S4E521\|A0A1S4E521_CUCME	1.3e-16	69.14	uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=...	[more]
tr\|A0A0A0LAU6\|A0A0A0LAU6_CUCSA	4.8e-11	67.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G463190 PE=4 SV=1	[more]
tr\|A0A0A0KFN3\|A0A0A0KFN3_CUCSA	7.6e-09	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G224010 PE=4 SV=1	[more]
tr\|A0A1S3CMU0\|A0A1S3CMU0_CUCME	1.5e-04	64.71	uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=...	[more]

BLAST of Bhi03G001966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901625.1	8.8e-17	69.14	PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo]	[more]
XP_016903324.1	2.0e-16	69.14	PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo]	[more]
KGN58049.1	7.2e-11	67.69	hypothetical protein Csa_3G463190 [Cucumis sativus]	[more]
KGN47237.1	1.1e-08	61.54	hypothetical protein Csa_6G224010 [Cucumis sativus]	[more]
XP_008464978.1	2.2e-04	64.71	PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001966	Bhi03M001966	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..81

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G001966	Cucumber (Gy14) v1	cgywgoB537
Bhi03G001966	Cucumber (Gy14) v2	cgybwgoB377
Bhi03G001966	Cucurbita maxima (Rimu)	cmawgoB0802
Bhi03G001966	Cucurbita maxima (Rimu)	cmawgoB1064
Bhi03G001966	Cucurbita moschata (Rifu)	cmowgoB0796
Bhi03G001966	Cucurbita moschata (Rifu)	cmowgoB1057
Bhi03G001966	Cucurbita pepo (Zucchini)	cpewgoB0088
Bhi03G001966	Cucurbita pepo (Zucchini)	cpewgoB0613
Bhi03G001966	Wild cucumber (PI 183967)	cpiwgoB398
Bhi03G001966	Cucumber (Chinese Long) v3	cucwgoB400
Bhi03G001966	Cucumber (Chinese Long) v3	cucwgoB405
Bhi03G001966	Cucumber (Chinese Long) v2	cuwgoB393
Bhi03G001966	Bottle gourd (USVL1VR-Ls)	lsiwgoB176
Bhi03G001966	Melon (DHL92) v3.6.1	medwgoB647
Bhi03G001966	Melon (DHL92) v3.6.1	medwgoB654
Bhi03G001966	Melon (DHL92) v3.6.1	medwgoB665
Bhi03G001966	Melon (DHL92) v3.5.1	mewgoB647
Bhi03G001966	Melon (DHL92) v3.5.1	mewgoB659
Bhi03G001966	Watermelon (Charleston Gray)	wcgwgoB386
Bhi03G001966	Watermelon (97103) v2	wgowmbB426
Bhi03G001966	Watermelon (97103) v1	wgowmB452
Bhi03G001966	Silver-seed gourd	carwgoB0578
Bhi03G001966	Silver-seed gourd	carwgoB0636