Bhi03G001937 (gene) Wax gourd

Overview
NameBhi03G001937
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptioneukaryotic translation initiation factor 5-like
Locationchr3 : 53603154 .. 53603334 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAGGAGATTGCTCTAGTCCTGAAATCCTTATATGACGGCGATGTTATAGAGGAGGAATTCGTGCTTGAGCGGTACCAGCAGGGTGTGGCTGATGCTAACAAAAGTTCTCATATCTGGAAGCATGTAAAGCCATTCATCGAATGGCTTCAAAATGCTGTGTCGGAGACGGAGGAAGAAGA

mRNA sequence

GTAAGGAGATTGCTCTAGTCCTGAAATCCTTATATGACGGCGATGTTATAGAGGAGGAATTCGTGCTTGAGCGGTACCAGCAGGGTGTGGCTGATGCTAACAAAAGTTCTCATATCTGGAAGCATGTAAAGCCATTCATCGAATGGCTTCAAAATGCTGTGTCGGAGACGGAGGAAGAAGA

Coding sequence (CDS)

GTAAGGAGATTGCTCTAGTCCTGAAATCCTTATATGACGGCGATGTTATAGAGGAGGAATTCGTGCTTGAGCGGTACCAGCAGGGTGTGGCTGATGCTAACAAAAGTTCTCATATCTGGAAGCATGTAAAGCCATTCATCGAATGGCTTCAAAATGCTGTGTCGGAGACGGAGGAAGAAGA

Protein sequence

KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE
Homology
[Close]
BLAST of Bhi03G001937 vs. Swiss-Prot
Match: sp|Q9S825|IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana OX=3702 GN=At1g77840 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.4e-17
Identity = 39/59 (66.10%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLK+LYD D+IEEE VL+ Y++G+  A+KSS +WK+VKPF+EWLQ+A SE+EEE
Sbjct: 378 KEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSAESESEEE 436

[Close]
BLAST of Bhi03G001937 vs. Swiss-Prot
Match: sp|P48724|IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris OX=3885 GN=EIF5 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-15
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLK+LYD DV+EEE ++  YQ+G+   NK+S IWK+ +PFI+WLQNA SE++EE
Sbjct: 385 KEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESDEE 443

[Close]
BLAST of Bhi03G001937 vs. Swiss-Prot
Match: sp|Q9C8F1|IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana OX=3702 GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-12
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALV+K LYD D+++E+ ++E Y +GV    KSS + K+V PFIEWLQNA SE+EEE
Sbjct: 385 KEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAESESEEE 439

[Close]
BLAST of Bhi03G001937 vs. Swiss-Prot
Match: sp|P55876|IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays OX=4577 GN=EIF5 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-10
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETE 58
           KE+ +VLK+LYDGD+++EE +++ Y   VA A K S + K+ KPF+EWLQ+A S+ E
Sbjct: 392 KEVPVVLKALYDGDILDEETIVDWYNDAVA-AGKDSQVVKNAKPFVEWLQSAESDEE 447

[Close]
BLAST of Bhi03G001937 vs. Swiss-Prot
Match: sp|Q6PD83|BZW1A_DANRE (Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio OX=7955 GN=bzw1a PE=2 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 9.4e-04
Identity = 22/59 (37.29%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           K    ++  LY  DV+ EE +L+ Y +G     KS  + + +K F+EWL+NA  E+E E
Sbjct: 357 KAFQKIVVLLYKADVLSEEVILKWYTEGHVAKGKSVFL-EQMKKFVEWLKNAEEESESE 414

[Close]
BLAST of Bhi03G001937 vs. TAIR10
Match: AT1G77840.1 (Translation initiation factor IF2/IF5)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-18
Identity = 39/59 (66.10%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLK+LYD D+IEEE VL+ Y++G+  A+KSS +WK+VKPF+EWLQ+A SE+EEE
Sbjct: 378 KEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSAESESEEE 436

[Close]
BLAST of Bhi03G001937 vs. TAIR10
Match: AT1G36730.1 (Translation initiation factor IF2/IF5)

HSP 1 Score: 70.1 bits (170), Expect = 5.2e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALV+K LYD D+++E+ ++E Y +GV    KSS + K+V PFIEWLQNA SE+EEE
Sbjct: 385 KEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAESESEEE 439

[Close]
BLAST of Bhi03G001937 vs. TAIR10
Match: AT1G65220.1 (ARM repeat superfamily protein)

HSP 1 Score: 39.3 bits (90), Expect = 9.8e-04
Identity = 17/50 (34.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 6   VLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSE 56
           V++SLY+ DV+ E+ +L  Y++G     + + + K ++PF+ WL+ A  E
Sbjct: 362 VVRSLYELDVLAEDTILHWYRKGTNPKGRQTFV-KGLEPFVNWLEEAEEE 410

[Close]
BLAST of Bhi03G001937 vs. TrEMBL
Match: tr|A0A0A0LMB4|A0A0A0LMB4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G310390 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-21
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLKSLYDGDVIEEEFVLE YQQGVA ANKSS IWK+VKPFIEWLQNA SETEEE
Sbjct: 386 KEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 444

[Close]
BLAST of Bhi03G001937 vs. TrEMBL
Match: tr|A0A1S3BCI3|A0A1S3BCI3_CUCME (eukaryotic translation initiation factor 5-like OS=Cucumis melo OX=3656 GN=LOC103488416 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLKSLYDGDVIEEEFVLE Y+QGVA ANKSS IWK+VKPFIEWLQNA SETEEE
Sbjct: 386 KEVALVLKSLYDGDVIEEEFVLEWYKQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 444

[Close]
BLAST of Bhi03G001937 vs. TrEMBL
Match: tr|A0A0B0NJ45|A0A0B0NJ45_GOSAR (Eukaryotic translation initiation factor 5 OS=Gossypium arboreum OX=29729 GN=F383_17868 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLK+LYD D++EEEF++E YQ+GVA  NKSS IWK+ KPFIEWLQNA SETEEE
Sbjct: 384 KEVALVLKALYDNDILEEEFIMEWYQKGVAGGNKSSQIWKNSKPFIEWLQNAESETEEE 442

[Close]
BLAST of Bhi03G001937 vs. TrEMBL
Match: tr|A0A1U8L5Q2|A0A1U8L5Q2_GOSHI (eukaryotic translation initiation factor 5-like OS=Gossypium hirsutum OX=3635 GN=LOC107924154 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLK+LYD D++EEEF++E YQ+GVA  NKSS IWK+ KPFIEWLQNA SETEEE
Sbjct: 226 KEVALVLKALYDNDILEEEFIMEWYQKGVAGGNKSSQIWKNSKPFIEWLQNAESETEEE 284

[Close]
BLAST of Bhi03G001937 vs. TrEMBL
Match: tr|A0A0D2RAM3|A0A0D2RAM3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G220100 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALV+K LYD D++EEEF++E YQ+G+A +NKSS IWK+VKPFIEWLQNA SETEEE
Sbjct: 389 KEVALVIKVLYDDDILEEEFIMEWYQKGIAGSNKSSQIWKNVKPFIEWLQNAESETEEE 447

[Close]
BLAST of Bhi03G001937 vs. NCBI nr
Match: XP_004150695.1 (PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis sativus] >XP_011649412.1 PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis sativus] >KGN62179.1 hypothetical protein Csa_2G310390 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLKSLYDGDVIEEEFVLE YQQGVA ANKSS IWK+VKPFIEWLQNA SETEEE
Sbjct: 386 KEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 444

[Close]
BLAST of Bhi03G001937 vs. NCBI nr
Match: XP_022962417.1 (probable eukaryotic translation initiation factor 5-1 [Cucurbita moschata] >XP_022962418.1 probable eukaryotic translation initiation factor 5-1 [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KEIALVLKSLYDGDVIEEEFVLE YQQG+A ANK S IWKHVKPFIEWLQNA SETEEE
Sbjct: 390 KEIALVLKSLYDGDVIEEEFVLEWYQQGLAGANKGSQIWKHVKPFIEWLQNAESETEEE 448

[Close]
BLAST of Bhi03G001937 vs. NCBI nr
Match: XP_022997142.1 (probable eukaryotic translation initiation factor 5-1 [Cucurbita maxima] >XP_022997143.1 probable eukaryotic translation initiation factor 5-1 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KEIALVLKSLYDGDVIEEEFVLE YQQG+A ANK S IWKHVKPFIEWLQNA SETEEE
Sbjct: 390 KEIALVLKSLYDGDVIEEEFVLEWYQQGLAGANKGSQIWKHVKPFIEWLQNAESETEEE 448

[Close]
BLAST of Bhi03G001937 vs. NCBI nr
Match: XP_008445359.1 (PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis melo] >XP_008445360.1 PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLKSLYDGDVIEEEFVLE Y+QGVA ANKSS IWK+VKPFIEWLQNA SETEEE
Sbjct: 386 KEVALVLKSLYDGDVIEEEFVLEWYKQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 444

[Close]
BLAST of Bhi03G001937 vs. NCBI nr
Match: XP_022131574.1 (eukaryotic translation initiation factor 5-like [Momordica charantia] >XP_022131575.1 eukaryotic translation initiation factor 5-like [Momordica charantia] >XP_022131576.1 eukaryotic translation initiation factor 5-like [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1   KEIALVLKSLYDGDVIEEEFVLERYQQGVADANKSSHIWKHVKPFIEWLQNAVSETEEE 60
           KE+ALVLKSLYDGDV+EEEFVLE YQQG+A  NKSS IWKHVKPFIEWLQNA SETEEE
Sbjct: 390 KEVALVLKSLYDGDVLEEEFVLEWYQQGLAGENKSSQIWKHVKPFIEWLQNAESETEEE 448

The following BLAST results are available for this feature:
BLAST of Bhi03G001937 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S825|IF5Z_ARATH7.4e-1766.10Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana OX... [more]
sp|P48724|IF5_PHAVU6.9e-1561.02Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris OX=3885 GN=EIF5... [more]
sp|Q9C8F1|IF5Y_ARATH9.4e-1257.63Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana OX... [more]
sp|P55876|IF5_MAIZE3.9e-1050.88Eukaryotic translation initiation factor 5 OS=Zea mays OX=4577 GN=EIF5 PE=2 SV=1[more]
sp|Q6PD83|BZW1A_DANRE9.4e-0437.29Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio OX=7955... [more]
BLAST of Bhi03G001937 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77840.14.1e-1866.10Translation initiation factor IF2/IF5[more]
AT1G36730.15.2e-1357.63Translation initiation factor IF2/IF5[more]
AT1G65220.19.8e-0434.00ARM repeat superfamily protein[more]
BLAST of Bhi03G001937 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMB4|A0A0A0LMB4_CUCSA6.3e-2189.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G310390 PE=4 SV=1[more]
tr|A0A1S3BCI3|A0A1S3BCI3_CUCME1.8e-2088.14eukaryotic translation initiation factor 5-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0B0NJ45|A0A0B0NJ45_GOSAR1.9e-1774.58Eukaryotic translation initiation factor 5 OS=Gossypium arboreum OX=29729 GN=F38... [more]
tr|A0A1U8L5Q2|A0A1U8L5Q2_GOSHI1.9e-1774.58eukaryotic translation initiation factor 5-like OS=Gossypium hirsutum OX=3635 GN... [more]
tr|A0A0D2RAM3|A0A0D2RAM3_GOSRA1.9e-1772.88Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G220100 PE=4 ... [more]
BLAST of Bhi03G001937 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150695.19.5e-2189.83PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis sativus] >XP... [more]
XP_022962417.19.5e-2189.83probable eukaryotic translation initiation factor 5-1 [Cucurbita moschata] >XP_0... [more]
XP_022997142.19.5e-2189.83probable eukaryotic translation initiation factor 5-1 [Cucurbita maxima] >XP_022... [more]
XP_008445359.12.8e-2088.14PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis melo] >XP_00... [more]
XP_022131574.12.8e-2086.44eukaryotic translation initiation factor 5-like [Momordica charantia] >XP_022131... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR003307W2_domain
IPR016021MIF4-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001732 formation of cytoplasmic translation initiation complex
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0050790 regulation of catalytic activity
cellular_component GO:0005829 cytosol
molecular_function GO:0071074 eukaryotic initiation factor eIF2 binding
molecular_function GO:0005092 GDP-dissociation inhibitor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001937Bhi03M001937mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3DG3DSA:1.25.40.180coord: 1..59
e-value: 1.5E-13
score: 52.8
IPR003307W2 domainPFAMPF02020W2coord: 3..59
e-value: 3.3E-13
score: 49.5
IPR003307W2 domainPROSITEPS51363W2coord: 1..59
score: 14.391
NoneNo IPR availablePANTHERPTHR23001EUKARYOTIC TRANSLATION INITIATION FACTORcoord: 1..59
NoneNo IPR availablePANTHERPTHR23001:SF8EUKARYOTIC TRANSLATION INITIATION FACTOR 5-2-RELATEDcoord: 1..59
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 3..52

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G001937Cucumber (Gy14) v1cgywgoB329
Bhi03G001937Cucumber (Gy14) v2cgybwgoB391
Bhi03G001937Cucurbita maxima (Rimu)cmawgoB0802
Bhi03G001937Cucurbita maxima (Rimu)cmawgoB1064
Bhi03G001937Cucurbita moschata (Rifu)cmowgoB0796
Bhi03G001937Cucurbita moschata (Rifu)cmowgoB1057
Bhi03G001937Cucurbita pepo (Zucchini)cpewgoB0088
Bhi03G001937Cucurbita pepo (Zucchini)cpewgoB0613
Bhi03G001937Wild cucumber (PI 183967)cpiwgoB412
Bhi03G001937Cucumber (Chinese Long) v3cucwgoB415
Bhi03G001937Cucumber (Chinese Long) v2cuwgoB411
Bhi03G001937Bottle gourd (USVL1VR-Ls)lsiwgoB177
Bhi03G001937Melon (DHL92) v3.6.1medwgoB668
Bhi03G001937Melon (DHL92) v3.5.1mewgoB646
Bhi03G001937Watermelon (Charleston Gray)wcgwgoB386
Bhi03G001937Watermelon (97103) v2wgowmbB426
Bhi03G001937Silver-seed gourdcarwgoB0242
Bhi03G001937Silver-seed gourdcarwgoB0368