Bhi03G001905 (gene) Wax gourd

Overview
NameBhi03G001905
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr3 : 52497281 .. 52497514 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGCTTAGTTGGAGAATAATTTGGGGAGGAGCCTGTGCTTTAATTCTCCTAAGCTTTCATTTTCTCGCCGCCCAAACAGCGGCCGGAAAAGTTGGTGCAGCCAATGAAATTAGCCGATTGCGGCGGCTTGATTTTGGGATGTATCCCAGAAACATTCCTATTCCTCCATCTGGACCCAGCAAAAGGAATTCCGACCATTCTACTCCTCCGCCGCTTCCGCCTTTTTGA

mRNA sequence

ATGGGGTGGCTTAGTTGGAGAATAATTTGGGGAGGAGCCTGTGCTTTAATTCTCCTAAGCTTTCATTTTCTCGCCGCCCAAACAGCGGCCGGAAAAGTTGGTGCAGCCAATGAAATTAGCCGATTGCGGCGGCTTGATTTTGGGATGTATCCCAGAAACATTCCTATTCCTCCATCTGGACCCAGCAAAAGGAATTCCGACCATTCTACTCCTCCGCCGCTTCCGCCTTTTTGA

Coding sequence (CDS)

ATGGGGTGGCTTAGTTGGAGAATAATTTGGGGAGGAGCCTGTGCTTTAATTCTCCTAAGCTTTCATTTTCTCGCCGCCCAAACAGCGGCCGGAAAAGTTGGTGCAGCCAATGAAATTAGCCGATTGCGGCGGCTTGATTTTGGGATGTATCCCAGAAACATTCCTATTCCTCCATCTGGACCCAGCAAAAGGAATTCCGACCATTCTACTCCTCCGCCGCTTCCGCCTTTTTGA

Protein sequence

MGWLSWRIIWGGACALILLSFHFLAAQTAAGKVGAANEISRLRRLDFGMYPRNIPIPPSGPSKRNSDHSTPPPLPPF
Homology
[Close]
BLAST of Bhi03G001905 vs. TAIR10
Match: AT1G68765.1 (Putative membrane lipoprotein)

HSP 1 Score: 40.0 bits (92), Expect = 7.5e-04
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 16 LILLSF-HFLAAQT---AAGKVGAANEISR-LRRLD------FGMYPRNIPIPPSGPSKR 67
          ++LL F  FLAA +   AA ++GA  E+ + ++RL       FG  P+ +PIPPS PSKR
Sbjct: 8  MVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHIFGYLPKGVPIPPSAPSKR 67

The following BLAST results are available for this feature:
BLAST of Bhi03G001905 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi03G001905 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68765.17.5e-0441.94Putative membrane lipoprotein[more]
BLAST of Bhi03G001905 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi03G001905 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001905Bhi03M001905mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..77

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G001905Bottle gourd (USVL1VR-Ls)lsiwgoB169
Bhi03G001905Bottle gourd (USVL1VR-Ls)lsiwgoB189
Bhi03G001905Melon (DHL92) v3.6.1medwgoB656
Bhi03G001905Melon (DHL92) v3.6.1medwgoB666
Bhi03G001905Melon (DHL92) v3.5.1mewgoB649
Bhi03G001905Melon (DHL92) v3.5.1mewgoB660
Bhi03G001905Watermelon (Charleston Gray)wcgwgoB388
Bhi03G001905Watermelon (97103) v2wgowmbB428