Bhi03G001903 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G001903
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Mitochondrial Rho GTPase
Location	chr3 : 52487845 .. 52488889 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGAGCAGAAAGGCACATCTCGGTTCTATTGGCTATATCATAAATGTGGGTTTTATGGATCATACAACAATTTTTCAAGTTCAATTTTTCGTGCCTATATGAAAATCTTACCATCTATACCTCACTGATGTACATTTTCACTTCCCACATTTTTGCATTGTTCAATTTAAGGTAATAGAATCACATGTTCTCAACATCGTATTATTTGATTGACAGATCCTTGAGGTCTTTTACTATGCCCAAAAAGTTGTACTTCATCCAACAGGTCCACTTCTTGATCAAGAAACTCAGACTCTAAAGCCTAGGTGTGTTCAGATATTCATTCTTTGTGATCATGATAAAGACGGTGCTTTGAGTGACGCAGAGTTGAATAATTTTCAAGTCTTCCTTTCCGTCCACAATTTTTTTGGCAAACACCTTATAAAATTTTTATTGATACCTGAAAACAAAAACCCAATATTTAGTTTTGATACTTGAGTTTGCCAGCAGCCAATTACAATATTAATTATTAAGCTTCTCGAATTGTTCTCCTAGGGTGAGCTTGTGGGTGCTTTAGAAGGGGCTATAGCATCAGCTTCTCTTCTTGGAGTTCCTCTAGGACATAATTCATCATTATTCATTGTAGCAGAATAGTTCTCGCACCTCGCTCATTCGTGCACTTTCGACGGATATAAGGCCCGAAGAAATTCCAAACGTGAAGATGCTCTTTCTTCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTGAAACCAAAGGTCTCTTCTGTATGCACATTTTTTCAAGTTTTCTTGGTGCCTATTCTTTATCCATTGACCTCCTTTGATGGATTTTAAATAATGCAGTTAAGTTTATAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTTGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTCAGGCAGCTTGAGGATGAAGTAATTGCTCGTAGTTATTTGGAGACTCTGGTGAGTCCTTTTCGAAAAATTTGTTTAGATTAG

mRNA sequence

ATGACTGTGAGCAGAAAGGCACATCTCGGTTCTATTGGCTATATCATAAATATCCTTGAGGTCTTTTACTATGCCCAAAAAGTTGTACTTCATCCAACAGGTCCACTTCTTGATCAAGAAACTCAGACTCTAAAGCCTAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTCAGGCAGCTTGAGGATGAAGTAATTGCTCGTAGTTATTTGGAGACTCTGGTGAGTCCTTTTCGAAAAATTTGTTTAGATTAG

Coding sequence (CDS)

ATGACTGTGAGCAGAAAGGCACATCTCGGTTCTATTGGCTATATCATAAATATCCTTGAGGTCTTTTACTATGCCCAAAAAGTTGTACTTCATCCAACAGGTCCACTTCTTGATCAAGAAACTCAGACTCTAAAGCCTAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTCAGGCAGCTTGAGGATGAAGTAATTGCTCGTAGTTATTTGGAGACTCTGGTGAGTCCTTTTCGAAAAATTTGTTTAGATTAG

Protein sequence

MTVSRKAHLGSIGYIINILEVFYYAQKVVLHPTGPLLDQETQTLKPRGDTTPGSRVAYRMTVRQLEDEVIARSYLETLVSPFRKICLD

Homology

[Close]

BLAST of Bhi03G001903 vs. Swiss-Prot
Match: sp|F4KAB8|MCM6_ARATH (DNA replication licensing factor MCM6 OS=Arabidopsis thaliana OX=3702 GN=MCM6 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 27  KVVLHPTGPLLDQETQTLKPRGDTTPGSRVAYRMTVRQLE-----DEVIARSYLETLVSP 82
           K  L P    L  E+     RGDTTPG+RVAYRMTVRQLE      E IARS+LE LV P
Sbjct: 582 KPKLSPEARKLLVESYVALRRGDTTPGTRVAYRMTVRQLEALIRLSEAIARSHLEILVKP 641

[Close]

BLAST of Bhi03G001903 vs. Swiss-Prot
Match: sp|Q8RXF8|MIRO1_ARATH (Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana OX=3702 GN=MIRO1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 20  EVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           EVFYYAQK VLHPTGPL DQ++Q LKPR
Sbjct: 171 EVFYYAQKTVLHPTGPLFDQDSQALKPR 198

[Close]

BLAST of Bhi03G001903 vs. Swiss-Prot
Match: sp|B8AZX3|MCM6_ORYSI (DNA replication licensing factor MCM6 OS=Oryza sativa subsp. indica OX=39946 GN=MCM6 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.7e-06
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 47  RGDTTPGSRVAYRMTVRQLE-----DEVIARSYLETLVSP 82
           RGD+TPG+RVAYRMTVRQLE      E IARS+LE +V P
Sbjct: 606 RGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLP 645

[Close]

BLAST of Bhi03G001903 vs. Swiss-Prot
Match: sp|Q6F353|MCM6_ORYSJ (DNA replication licensing factor MCM6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0235800 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.7e-06
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 47  RGDTTPGSRVAYRMTVRQLE-----DEVIARSYLETLVSP 82
           RGD+TPG+RVAYRMTVRQLE      E IARS+LE +V P
Sbjct: 606 RGDSTPGTRVAYRMTVRQLEALIRLSEAIARSHLERVVLP 645

[Close]

BLAST of Bhi03G001903 vs. Swiss-Prot
Match: sp|P0CO79|GEM1_CRYNB (Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=GEM1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-05
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           +N+ EVFY+AQK VLHPT PL D    TLKP+
Sbjct: 157 LNVSEVFYFAQKAVLHPTAPLYDSREHTLKPK 188

[Close]

BLAST of Bhi03G001903 vs. TAIR10
Match: AT5G44635.1 (minichromosome maintenance (MCM2/3/5) family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 27  KVVLHPTGPLLDQETQTLKPRGDTTPGSRVAYRMTVRQLE-----DEVIARSYLETLVSP 82
           K  L P    L  E+     RGDTTPG+RVAYRMTVRQLE      E IARS+LE LV P
Sbjct: 582 KPKLSPEARKLLVESYVALRRGDTTPGTRVAYRMTVRQLEALIRLSEAIARSHLEILVKP 641

[Close]

BLAST of Bhi03G001903 vs. TAIR10
Match: AT5G27540.1 (MIRO-related GTP-ase 1)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-08
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 20  EVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           EVFYYAQK VLHPTGPL DQ++Q LKPR
Sbjct: 171 EVFYYAQKTVLHPTGPLFDQDSQALKPR 198

[Close]

BLAST of Bhi03G001903 vs. TAIR10
Match: AT3G63150.1 (MIRO-related GTP-ase 2)

HSP 1 Score: 47.8 bits (112), Expect = 4.1e-06
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 15  IINILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           +I + +VFY+A K VLHPT PL DQE Q LKPR
Sbjct: 163 LIQVPDVFYFASKAVLHPTFPLFDQEKQCLKPR 195

[Close]

BLAST of Bhi03G001903 vs. TAIR10
Match: AT3G05310.1 (MIRO-related GTP-ase 3)

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 0


Query: 20  EVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           +V YYAQK V+ P GP+ DQE   LKPR
Sbjct: 168 DVLYYAQKAVIDPVGPVFDQENNVLKPR 195

[Close]

BLAST of Bhi03G001903 vs. TrEMBL
Match: tr|A0A2P5RQT8|A0A2P5RQT8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13885 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 15  IINILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           II I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 195 IIMIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 227

[Close]

BLAST of Bhi03G001903 vs. TrEMBL
Match: tr|A0A2P5XN55|A0A2P5XN55_GOSBA (Mitochondrial Rho GTPase OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15914 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 15  IINILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           II I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 167 IIMIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 199

[Close]

BLAST of Bhi03G001903 vs. TrEMBL
Match: tr|A0A059D4K9|A0A059D4K9_EUCGR (Mitochondrial Rho GTPase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B01990 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           I I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 166 IQIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 197

[Close]

BLAST of Bhi03G001903 vs. TrEMBL
Match: tr|A0A2N9EUV5|A0A2N9EUV5_FAGSY (Mitochondrial Rho GTPase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6540 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           I I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 166 IQIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 197

[Close]

BLAST of Bhi03G001903 vs. TrEMBL
Match: tr|A0A2I4GD10|A0A2I4GD10_9ROSI (Mitochondrial Rho GTPase OS=Juglans regia OX=51240 GN=LOC109006833 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           I I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 166 IQIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 197

[Close]

BLAST of Bhi03G001903 vs. NCBI nr
Match: PPD89163.1 (hypothetical protein GOBAR_DD13885 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 15  IINILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           II I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 195 IIMIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 227

[Close]

BLAST of Bhi03G001903 vs. NCBI nr
Match: PPS04724.1 (hypothetical protein GOBAR_AA15914 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 15  IINILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           II I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 167 IIMIPEVFYYAQKAVLHPTGPLFDQETQTLKPR 199

[Close]

BLAST of Bhi03G001903 vs. NCBI nr
Match: XP_022937996.1 (mitochondrial Rho GTPase 1-like [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           I I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 166 IQISEVFYYAQKAVLHPTGPLFDQETQTLKPR 197

[Close]

BLAST of Bhi03G001903 vs. NCBI nr
Match: XP_022965635.1 (mitochondrial Rho GTPase 1-like [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           I I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 166 IQISEVFYYAQKAVLHPTGPLFDQETQTLKPR 197

[Close]

BLAST of Bhi03G001903 vs. NCBI nr
Match: XP_023537980.1 (mitochondrial Rho GTPase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 16  INILEVFYYAQKVVLHPTGPLLDQETQTLKPR 48
           I I EVFYYAQK VLHPTGPL DQETQTLKPR
Sbjct: 166 IQISEVFYYAQKAVLHPTGPLFDQETQTLKPR 197

The following BLAST results are available for this feature:

BLAST of Bhi03G001903 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4KAB8\|MCM6_ARATH	2.1e-07	56.67	DNA replication licensing factor MCM6 OS=Arabidopsis thaliana OX=3702 GN=MCM6 PE...	[more]
sp\|Q8RXF8\|MIRO1_ARATH	1.0e-06	82.14	Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana OX=3702 GN=MIRO1 PE=1 SV=1	[more]
sp\|B8AZX3\|MCM6_ORYSI	6.7e-06	67.50	DNA replication licensing factor MCM6 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q6F353\|MCM6_ORYSJ	6.7e-06	67.50	DNA replication licensing factor MCM6 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|P0CO79\|GEM1_CRYNB	5.7e-05	62.50	Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D...	[more]

BLAST of Bhi03G001903 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44635.1	1.2e-08	56.67	minichromosome maintenance (MCM2/3/5) family protein	[more]
AT5G27540.1	5.8e-08	82.14	MIRO-related GTP-ase 1	[more]
AT3G63150.1	4.1e-06	63.64	MIRO-related GTP-ase 2	[more]
AT3G05310.1	2.3e-04	60.71	MIRO-related GTP-ase 3	[more]

BLAST of Bhi03G001903 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5RQT8\|A0A2P5RQT8_GOSBA	1.7e-06	87.88	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13885 PE=4 SV...	[more]
tr\|A0A2P5XN55\|A0A2P5XN55_GOSBA	1.7e-06	87.88	Mitochondrial Rho GTPase OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15914 PE=3 S...	[more]
tr\|A0A059D4K9\|A0A059D4K9_EUCGR	2.9e-06	87.50	Mitochondrial Rho GTPase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B01990 PE=3 S...	[more]
tr\|A0A2N9EUV5\|A0A2N9EUV5_FAGSY	2.9e-06	87.50	Mitochondrial Rho GTPase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6540 PE=3 SV=1	[more]
tr\|A0A2I4GD10\|A0A2I4GD10_9ROSI	2.9e-06	87.50	Mitochondrial Rho GTPase OS=Juglans regia OX=51240 GN=LOC109006833 PE=3 SV=1	[more]

BLAST of Bhi03G001903 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD89163.1	2.6e-06	87.88	hypothetical protein GOBAR_DD13885 [Gossypium barbadense]	[more]
PPS04724.1	2.6e-06	87.88	hypothetical protein GOBAR_AA15914 [Gossypium barbadense]	[more]
XP_022937996.1	3.4e-06	87.50	mitochondrial Rho GTPase 1-like [Cucurbita moschata]	[more]
XP_022965635.1	3.4e-06	87.50	mitochondrial Rho GTPase 1-like [Cucurbita maxima]	[more]
XP_023537980.1	3.4e-06	87.50	mitochondrial Rho GTPase 1-like [Cucurbita pepo subsp. pepo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001903	Bhi03M001903	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24072:SF73	MITOCHONDRIAL RHO GTPASE 2	coord: 16..47
None	No IPR available	PANTHER	PTHR24072	RHO FAMILY GTPASE	coord: 16..47

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G001903	Bottle gourd (USVL1VR-Ls)	lsiwgoB169
Bhi03G001903	Bottle gourd (USVL1VR-Ls)	lsiwgoB189
Bhi03G001903	Melon (DHL92) v3.6.1	medwgoB656
Bhi03G001903	Melon (DHL92) v3.6.1	medwgoB666
Bhi03G001903	Melon (DHL92) v3.5.1	mewgoB649
Bhi03G001903	Melon (DHL92) v3.5.1	mewgoB660
Bhi03G001903	Watermelon (Charleston Gray)	wcgwgoB388
Bhi03G001903	Watermelon (97103) v2	wgowmbB428