Bhi03G001888 (gene) Wax gourd

Overview
NameBhi03G001888
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionGag protease polyprotein
Locationchr3 : 52097675 .. 52098026 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAAGGAAGTGGAATTTCTTAATCTTCGTCAAGAGAACATGTCAGTGGCAAAGTATGAACGAAAATTTGATCGCATGTCCCACTTTGTCCCTCGACTAGTAGACACAGAAGAGAAGAAGGTGGAAAGGTTTATTTGGGGATTAAGAGAAGGCATTCGAGGCATTGTTATTGCTTTCCGACAAAAAGAGTATGCCCTTACCCTCAAGTAGGCCTTACTTATGGAAGTAGATCTTGCTACCAAAACCTCAACTTCTGAACGAGGATGCATGCCAAATGAAAAGAGGAAATTCACTCAACAGGGCTTTCGACGCTCACAACGGCAAGCAAAAATTTCCCAAAGCACTTAG

mRNA sequence

ATGTCAAAAGGAAGTGGAATTTCTTAATCTTCGTCAAGAGAACATGTCAGTGGCAAAGTATGAACGAAAATTTGATCGCATGTCCCACTTTGTCCCTCGACTAGTAGACACAGAAGAGAAGAAGGTGGAAAGGTTTATTTGGGGATTAAGAGAAGGCATTCGAGGCATTGTTATTGCTTTCCGACAAAAAGAGTATGCCCTTACCCTCAAGTAGGCCTTACTTATGGAAGTAGATCTTGCTACCAAAACCTCAACTTCTGAACGAGGATGCATGCCAAATGAAAAGAGGAAATTCACTCAACAGGGCTTTCGACGCTCACAACGGCAAGCAAAAATTTCCCAAAGCACTTAG

Coding sequence (CDS)

ATGTCAAAAGGAAGTGGAATTTCTTAATCTTCGTCAAGAGAACATGTCAGTGGCAAAGTATGAACGAAAATTTGATCGCATGTCCCACTTTGTCCCTCGACTAGTAGACACAGAAGAGAAGAAGGTGGAAAGGTTTATTTGGGGATTAAGAGAAGGCATTCGAGGCATTGTTATTGCTTTCCGACAAAAAGAGTATGCCCTTACCCTCAAGTAGGCCTTACTTATGGAAGTAGATCTTGCTACCAAAACCTCAACTTCTGAACGAGGATGCATGCCAAATGAAAAGAGGAAATTCACTCAACAGGGCTTTCGACGCTCACAACGGCAAGCAAAAATTTCCCAAAGCACTTAG

Protein sequence

CQKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFRQKEYALTLKALLMEVDLATKTSTSERGCMPNEKRKFTQQGFRRSQRQAKISQST
Homology
[Close]
BLAST of Bhi03G001888 vs. TrEMBL
Match: tr|Q84KB1|Q84KB1_CUCME (Gag-protease polyprotein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0 

Query: 3   KEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFRQ 62
           K  EFLNL Q +M+V +Y+ +FD +S F P ++ TE  + ++F+ GLR  I+G+V AFR 
Sbjct: 154 KRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP 213

Query: 63  KEYALTLKALLMEVDL-----ATKTSTSERGCMPNEKRKFTQQGFRRSQR 108
             +A    AL + VDL     A  + T+ RG    +KRK  QQ     QR
Sbjct: 214 ATHA---DALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQR 260

[Close]
BLAST of Bhi03G001888 vs. TrEMBL
Match: tr|E5GBB7|E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0 

Query: 3   KEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFRQ 62
           K  EFLNL Q +M+V +Y+ +FD +S F P ++ TE  + ++F+ GLR  I+G+V AFR 
Sbjct: 426 KRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP 485

Query: 63  KEYALTLKALLMEVDL-----ATKTSTSERGCMPNEKRKFTQQGFRRSQR 108
             +A    AL + VDL     A  + T+ RG    +KRK  QQ     QR
Sbjct: 486 ATHA---DALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQR 532

[Close]
BLAST of Bhi03G001888 vs. TrEMBL
Match: tr|A0A2N9GJL6|A0A2N9GJL6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30539 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 0 

Query: 2   QKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFR 61
           QKE EF+ + Q N SV +YERKF  +S F P +VD E +K   F  GLRE I+G V  F+
Sbjct: 67  QKEAEFIRIEQGNQSVYEYERKFAELSRFAPHMVDIEVRKARHFERGLREEIQGPVSMFK 126

Query: 62  QKEYALTL-KALLMEVDLATKTSTSERGCMPNE----KRKFT 99
            + YA  + +AL+ E +    + T++    P      KRKF+
Sbjct: 127 LETYAEVVDRALIAERNCKRLSKTNDEERKPKSGNFLKRKFS 168

[Close]
BLAST of Bhi03G001888 vs. TrEMBL
Match: tr|A0A2N9GFR5|A0A2N9GFR5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26132 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-08
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 2   QKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFR 61
           QKE EF+ + Q N SV +YERKF  +S F P +VD E +K   F  GLRE I+G V  F+
Sbjct: 139 QKEAEFIRIEQGNQSVYEYERKFAELSRFAPHMVDIEVRKARHFERGLREEIQGPVSMFK 198

Query: 62  QKEYALTL-KALLMEVDL--ATKTSTSER 88
            + YA  + +AL+ E +    +KTS  ER
Sbjct: 199 LETYAEVVDRALIAERNCKHLSKTSDEER 227

[Close]
BLAST of Bhi03G001888 vs. TrEMBL
Match: tr|A0A2N9GDM1|A0A2N9GDM1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25213 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-08
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 2    QKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFR 61
            QKE EF+ + Q N SV +YERKF  +S F P +VD E +K   F  GLRE I+G V  F+
Sbjct: 1226 QKEAEFIRIEQGNQSVYEYERKFAELSRFAPHMVDIEVRKARHFERGLREEIQGPVSMFK 1285

Query: 62   QKEYALTL-KALLMEVDL--ATKTSTSER 88
             + YA  + +AL+ E +    +KTS  ER
Sbjct: 1286 LETYAEVVDRALIAERNCKHLSKTSDEER 1314

[Close]
BLAST of Bhi03G001888 vs. NCBI nr
Match: XP_023550797.1 (uncharacterized protein LOC111808829 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0 

Query: 2   QKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFR 61
           +KE+EFLNL+Q NMSV  Y+R+F R+S F P +VDT+ K V RF+ GLR+GIRG+V    
Sbjct: 206 EKEMEFLNLKQGNMSVEDYDRQFLRLSRFAPEMVDTQAKMVHRFVMGLRKGIRGLVAIQN 265

Query: 62  QKEYALTLK-ALLMEVDLATKTSTSERGCMPNEKRK 97
             +Y+   + A  ++  +  KT   +      +KRK
Sbjct: 266 HTDYSSAFEVARTLDECMPVKTQPGQDEGSSGQKRK 301

[Close]
BLAST of Bhi03G001888 vs. NCBI nr
Match: XP_022939066.1 (uncharacterized protein LOC111445078 [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0 

Query: 2   QKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFR 61
           +KE+EFLNL+Q NMSV  Y+++F R+S F P +VDT+ K V RF+ GLR+GIRG+V    
Sbjct: 182 EKEMEFLNLKQGNMSVEDYDQQFLRLSRFAPEMVDTQSKMVHRFVMGLRKGIRGLVAIQN 241

Query: 62  QKEYALTLK-ALLMEVDLATKTSTSERGCMPNEKRK 97
             +YA   + A  ++  +  KT   +      +KRK
Sbjct: 242 HTDYASAFEVARTLDECMPVKTPPGQDEGSSGQKRK 277

[Close]
BLAST of Bhi03G001888 vs. NCBI nr
Match: XP_022992879.1 (uncharacterized protein LOC111489080 [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 6.6e-10
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 2   QKEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFR 61
           +KE+EFLNL+Q NMSV  Y+++F R+  F P +VDT+ K V RF+ GLR+GIRG+V    
Sbjct: 206 EKEMEFLNLKQGNMSVEDYDQQFLRLCRFAPEMVDTQSKMVHRFVMGLRKGIRGLVAIQN 265

Query: 62  QKEYALTLK-ALLMEVDLATKTSTSERGCMPNEKRK 97
             +Y+   + A  ++  +  KT   +      +KRK
Sbjct: 266 HTDYSSAFEVARTLDECMPIKTQPGQDEGSSGQKRK 301

[Close]
BLAST of Bhi03G001888 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 3   KEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFRQ 62
           KE EFL+L Q  +SVA+YERKF  +S F   L+ TE  K++RF+ GLR+GIRG V   R 
Sbjct: 135 KEAEFLHLVQGTLSVAQYERKFTELSRFALELIPTEALKIKRFVKGLRKGIRGPVDLQRP 194

Query: 63  KEYALTLK-ALLMEVDLATKTS-TSERGCMPNEKRKF----TQQGFRRSQRQAK 111
             YA  ++ AL+M+ D++ K S   E G     KRKF         R  QRQA+
Sbjct: 195 TTYAEAVRGALVMDKDVSNKASPLPEVGSSSGVKRKFPSTYADLVLRAPQRQAQ 248

[Close]
BLAST of Bhi03G001888 vs. NCBI nr
Match: XP_015900803.1 (uncharacterized protein LOC107433919 [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 3   KEVEFLNLRQENMSVAKYERKFDRMSHFVPRLVDTEEKKVERFIWGLREGIRGIVIAFRQ 62
           K  EF+ L+Q  M++A+YERKFD +S + P LVDT+E+K ++F  GLR+G+R  ++  R 
Sbjct: 53  KIAEFIELKQGKMTLAQYERKFDELSRYAPHLVDTDERKAQKFEKGLRDGLRRPILVLRL 112

Query: 63  KEYALTL-KALLMEVD--LATKTSTSERGCMP 92
           + Y   L +A ++E D  ++ K    ERG  P
Sbjct: 113 QTYGDVLQRAQILENDDEMSMKAEFKERGRSP 144

The following BLAST results are available for this feature:
BLAST of Bhi03G001888 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi03G001888 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi03G001888 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q84KB1|Q84KB1_CUCME6.3e-0940.00Gag-protease polyprotein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|E5GBB7|E5GBB7_CUCME6.3e-0940.00Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 S... [more]
tr|A0A2N9GJL6|A0A2N9GJL6_FAGSY4.1e-0840.20Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30539 PE=4 SV=1[more]
tr|A0A2N9GFR5|A0A2N9GFR5_FAGSY5.3e-0844.94Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26132 PE=4 SV=1[more]
tr|A0A2N9GDM1|A0A2N9GDM1_FAGSY5.3e-0844.94Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25213 PE=4 SV=1[more]
BLAST of Bhi03G001888 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023550797.16.0e-1142.71uncharacterized protein LOC111808829 [Cucurbita pepo subsp. pepo][more]
XP_022939066.17.8e-1142.71uncharacterized protein LOC111445078 [Cucurbita moschata][more]
XP_022992879.16.6e-1040.63uncharacterized protein LOC111489080 [Cucurbita maxima][more]
XP_022156326.11.1e-0944.74uncharacterized protein LOC111023247 [Momordica charantia][more]
XP_015900803.11.9e-0941.30uncharacterized protein LOC107433919 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001888Bhi03M001888mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 2..51
e-value: 1.3E-8
score: 34.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..115

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G001888Watermelon (Charleston Gray)wcgwgoB388
Bhi03G001888Watermelon (97103) v2wgowmbB428
Bhi03G001888Bottle gourd (USVL1VR-Ls)lsiwgoB169
Bhi03G001888Bottle gourd (USVL1VR-Ls)lsiwgoB189
Bhi03G001888Melon (DHL92) v3.6.1medwgoB656
Bhi03G001888Melon (DHL92) v3.5.1mewgoB649