Bhi03G001835 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G001835
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	CCR4-NOT transcription complex subunit, putative
Location	chr3 : 50710370 .. 50711011 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAAGAAATTGAACACGTTCGAGAAGAGAACCTTTGATTCGACAAGTTTGGGCTTCGAATTTCGATTTTGAAATCTCCAAATTCGATGAATGCCTTCGATTTCACTCAATTCTGTCTATCGACATAGAGTTTCTTGGTTTTATCAGAAAATCTCCACGGGGTTCGATTGAAGAAGCATTTTACGACGACTTCCAATTCAATGTCAACCAAACGAAACTGATTCAATTGGGTATAACGGCTTGTGATGATTCTAGTCATATCGGCGGCACATGGGAGTTTAATTTCTCTTATTTCAACTCGAAAGCCGACGCTCAAGGCTCTTCTTCTGTTTCGTTTCTAGAACAGAACGGTGTCGATTTAAAAAAACTGAAGAAAGATGGAATGCCCATCAAATTATTCGCTGCAAATTTCCTACCAATCATCCGAAAGCATAACGTTTTTAGATGGGTCACCTTCCATGGACTCTACGATATTGAGTATCTGATCAAAGCGATGGGTTTGATCATCGTCTTGCCAGAATCAATGGAGGAATTCACGATAGTGGTGATGAATGGGCTGGGAATTGTGAGGGATTTAAAACATATGGCTCGATTCTGTGAAGGATTAGAAGATGGGAAACTTGGCTTCAAAGACTAG

mRNA sequence

ATGGTTTGGGCTTCGAATTTCGATTTTGAAATCTCCAAATTCGATGAATGCCTTCGATTTCACTCAATTCTGTCTATCGACATAGAGTTTCTTGGTTTTATCAGAAAATCTCCACGGGGTTCGATTGAAGAAGCATTTTACGACGACTTCCAATTCAATGTCAACCAAACGAAACTGATTCAATTGGGTATAACGGCTTGTGATGATTCTAGTCATATCGGCGGCACATGGGAGTTTAATTTCTCTTATTTCAACTCGAAAGCCGACGCTCAAGGCTCTTCTTCTGTTTCGTTTCTAGAACAGAACGGTGTCGATTTAAAAAAACTGAAGAAAGATGGAATGCCCATCAAATTATTCGCTGCAAATTTCCTACCAATCATCCGAAAGCATAACGTTTTTAGATGGGTCACCTTCCATGGACTCTACGATATTGAGTATCTGATCAAAGCGATGGGTTTGATCATCGTCTTGCCAGAATCAATGGAGGAATTCACGATAGTGGTGATGAATGGGCTGGGAATTGTGAGGGATTTAAAACATATGGCTCGATTCTGTGAAGGATTAGAAGATGGGAAACTTGGCTTCAAAGACTAG

Coding sequence (CDS)

ATGGTTTGGGCTTCGAATTTCGATTTTGAAATCTCCAAATTCGATGAATGCCTTCGATTTCACTCAATTCTGTCTATCGACATAGAGTTTCTTGGTTTTATCAGAAAATCTCCACGGGGTTCGATTGAAGAAGCATTTTACGACGACTTCCAATTCAATGTCAACCAAACGAAACTGATTCAATTGGGTATAACGGCTTGTGATGATTCTAGTCATATCGGCGGCACATGGGAGTTTAATTTCTCTTATTTCAACTCGAAAGCCGACGCTCAAGGCTCTTCTTCTGTTTCGTTTCTAGAACAGAACGGTGTCGATTTAAAAAAACTGAAGAAAGATGGAATGCCCATCAAATTATTCGCTGCAAATTTCCTACCAATCATCCGAAAGCATAACGTTTTTAGATGGGTCACCTTCCATGGACTCTACGATATTGAGTATCTGATCAAAGCGATGGGTTTGATCATCGTCTTGCCAGAATCAATGGAGGAATTCACGATAGTGGTGATGAATGGGCTGGGAATTGTGAGGGATTTAAAACATATGGCTCGATTCTGTGAAGGATTAGAAGATGGGAAACTTGGCTTCAAAGACTAG

Protein sequence

MVWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQLGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAANFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHMARFCEGLEDGKLGFKD

Homology

[Close]

BLAST of Bhi03G001835 vs. Swiss-Prot
Match: sp|Q9LXM4|CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.1e-31
Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = 0


Query: 11  ISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQLGITACDDS 70
           +S  ++CLR +  ++ID EF   +R++ + + +E  Y D  F+V++ KLIQLG+T  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 71  SHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAANFLPIIRK- 130
             IGGTWE NFS F    DA+   S+ FL +NG+DL+K++++G+ I+ F +    +++K 
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 131 HNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHMARFCEGLE 190
                WVTFHG YDI YL+K       LP + E F+  V   LG V DLK MA  CEGL 
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL- 180

Query: 191 DGKLGFK 197
             +LG +
Sbjct: 181 SSRLGLE 184

[Close]

BLAST of Bhi03G001835 vs. Swiss-Prot
Match: sp|O64773|CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-29
Identity = 75/189 (39.68%), Postives = 108/189 (57.14%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N   E++   +CL+  + ++ID EF G ++++P  + +E  Y D +FNV+ T LIQ
Sbjct: 5   VWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLIQ 64

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG+T       I  TWE N S FN     +   S++FL+ NG+DL K++++G+ I+ F  
Sbjct: 65  LGLTLF--GKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFFM 124

Query: 122 NFLPII-RKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLG-IVRDLK 181
            F  I+  KH   RWVTF G YD  YL+K +     LPE+ +EF   V   LG  V D+K
Sbjct: 125 EFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDVK 184

Query: 182 HMARFCEGL 189
            MA  C GL
Sbjct: 185 KMAGLCSGL 190

[Close]

BLAST of Bhi03G001835 vs. Swiss-Prot
Match: sp|Q9C6M9|CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 74/189 (39.15%), Postives = 106/189 (56.08%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N + E+    +CL+  S ++ID EF G ++++P  + EE  Y D +FNV+ T LIQ
Sbjct: 4   VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 63

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG T  D    I  TWE N S FN     +   S++FL+ NG++L K+ ++G+ I+ F  
Sbjct: 64  LGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFR 123

Query: 122 NFLPIIR-KHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLG-IVRDLK 181
           +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K
Sbjct: 124 DFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVK 183

Query: 182 HMARFCEGL 189
            +A  C GL
Sbjct: 184 KIAESCSGL 191

[Close]

BLAST of Bhi03G001835 vs. Swiss-Prot
Match: sp|Q9SHJ0|CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 70/191 (36.65%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW SN D E+++  ECL+   +++ D E+ G I ++   S  +  Y   + NV  TKLIQ
Sbjct: 12  VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKLIQ 71

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
            G T  +    IGG WE NFS F   +D +   S+ FL ++G+DL+K++ +G  + +F  
Sbjct: 72  CGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEG--VDMFGY 131

Query: 122 NFLP----IIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRD 181
            F P    + R      +VTF G YD  Y +  +     LPE+  EF   V+   G V D
Sbjct: 132 GFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFGQVYD 191

Query: 182 LKHMARFCEGL 189
            K MA FCEGL
Sbjct: 192 TKVMAGFCEGL 199

[Close]

BLAST of Bhi03G001835 vs. Swiss-Prot
Match: sp|Q9SFX6|CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N + E++   +CL+  S ++ID EF G ++++P  + EE  Y D +FNV+ T LIQ
Sbjct: 9   VWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 68

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG T  D       TWE N S F+     +   S++FL+ NG++L K++++G+ I  F  
Sbjct: 69  LGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFR 128

Query: 122 NFLPII-RKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLG-IVRDLK 181
           +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K
Sbjct: 129 DFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVK 188

Query: 182 HMARFCEGL 189
            +A  C GL
Sbjct: 189 KIAESCSGL 196

[Close]

BLAST of Bhi03G001835 vs. TAIR10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-32
Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = 0


Query: 11  ISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQLGITACDDS 70
           +S  ++CLR +  ++ID EF   +R++ + + +E  Y D  F+V++ KLIQLG+T  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 71  SHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAANFLPIIRK- 130
             IGGTWE NFS F    DA+   S+ FL +NG+DL+K++++G+ I+ F +    +++K 
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 131 HNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHMARFCEGLE 190
                WVTFHG YDI YL+K       LP + E F+  V   LG V DLK MA  CEGL 
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL- 180

Query: 191 DGKLGFK 197
             +LG +
Sbjct: 181 SSRLGLE 184

[Close]

BLAST of Bhi03G001835 vs. TAIR10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-30
Identity = 75/189 (39.68%), Postives = 108/189 (57.14%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N   E++   +CL+  + ++ID EF G ++++P  + +E  Y D +FNV+ T LIQ
Sbjct: 5   VWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLIQ 64

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG+T       I  TWE N S FN     +   S++FL+ NG+DL K++++G+ I+ F  
Sbjct: 65  LGLTLF--GKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFFM 124

Query: 122 NFLPII-RKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLG-IVRDLK 181
            F  I+  KH   RWVTF G YD  YL+K +     LPE+ +EF   V   LG  V D+K
Sbjct: 125 EFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDVK 184

Query: 182 HMARFCEGL 189
            MA  C GL
Sbjct: 185 KMAGLCSGL 190

[Close]

BLAST of Bhi03G001835 vs. TAIR10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-29
Identity = 74/189 (39.15%), Postives = 106/189 (56.08%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N + E+    +CL+  S ++ID EF G ++++P  + EE  Y D +FNV+ T LIQ
Sbjct: 4   VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 63

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG T  D    I  TWE N S FN     +   S++FL+ NG++L K+ ++G+ I+ F  
Sbjct: 64  LGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFR 123

Query: 122 NFLPIIR-KHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLG-IVRDLK 181
           +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K
Sbjct: 124 DFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVK 183

Query: 182 HMARFCEGL 189
            +A  C GL
Sbjct: 184 KIAESCSGL 191

[Close]

BLAST of Bhi03G001835 vs. TAIR10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28
Identity = 70/191 (36.65%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW SN D E+++  ECL+   +++ D E+ G I ++   S  +  Y   + NV  TKLIQ
Sbjct: 12  VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKLIQ 71

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
            G T  +    IGG WE NFS F   +D +   S+ FL ++G+DL+K++ +G  + +F  
Sbjct: 72  CGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEG--VDMFGY 131

Query: 122 NFLP----IIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRD 181
            F P    + R      +VTF G YD  Y +  +     LPE+  EF   V+   G V D
Sbjct: 132 GFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFGQVYD 191

Query: 182 LKHMARFCEGL 189
            K MA FCEGL
Sbjct: 192 TKVMAGFCEGL 199

[Close]

BLAST of Bhi03G001835 vs. TAIR10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-28
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N + E++   +CL+  S ++ID EF G ++++P  + EE  Y D +FNV+ T LIQ
Sbjct: 9   VWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 68

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG T  D       TWE N S F+     +   S++FL+ NG++L K++++G+ I  F  
Sbjct: 69  LGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFR 128

Query: 122 NFLPII-RKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLG-IVRDLK 181
           +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K
Sbjct: 129 DFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVK 188

Query: 182 HMARFCEGL 189
            +A  C GL
Sbjct: 189 KIAESCSGL 196

[Close]

BLAST of Bhi03G001835 vs. TrEMBL
Match: tr|A0A0A0LPP0|A0A0A0LPP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.3e-74
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWASNFD EI++FDECLRFH+IL+ID EF GFI +SPRGSI++  Y DF FNVNQTKLIQ
Sbjct: 19  VWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSIDDELYKDFCFNVNQTKLIQ 78

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LGITA DD   IGG+WEFNFS F+ +ADA    ++ FLE NG+DLKK+KKDG+PI  F  
Sbjct: 79  LGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNGLDLKKMKKDGIPIASFTK 138

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHM 181
            FLPI+RK ++FRWVTFHGLYDI YLIKAMGLI VLP+SMEEF  VV+N +GIVRDLKHM
Sbjct: 139 KFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFATVVVNEVGIVRDLKHM 198

Query: 182 ARFCEGLED-GKLGFK 197
           A+FCEGL+D G+LG +
Sbjct: 199 AKFCEGLDDHGRLGLE 214

[Close]

BLAST of Bhi03G001835 vs. TrEMBL
Match: tr|A0A1S4E611|A0A1S4E611_CUCME (putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC107992290 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 100/151 (66.23%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWASNF+ EI++FDECLRFH+IL+ID EF GFI +SPR SI+E  Y +F+FNVNQ KLIQ
Sbjct: 3   VWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKLIQ 62

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LGITA +D   IGG+WEFNFS F+ + D+   S++ FLE+NG+D KKLKK G+PI  F  
Sbjct: 63  LGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNGLDFKKLKKYGIPIASFTK 122

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMG 153
            FLPII+K ++FRWVTFHGLYDI YLIKAMG
Sbjct: 123 KFLPIIQKRDIFRWVTFHGLYDIGYLIKAMG 153

[Close]

BLAST of Bhi03G001835 vs. TrEMBL
Match: tr|A0A1S3BY95|A0A1S3BY95_CUCME (putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC103494884 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 86/196 (43.88%), Postives = 128/196 (65.31%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  NF  E++  ++ L    ++++D EF GF+R +PRG+ EE FY D +FN+N  K++Q
Sbjct: 7   VWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLNHLKILQ 66

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLE-QNGVDLKKLKKDGMPIKLFA 121
           LG+T  D++ H+G +W F FS F+ + D    +S+ +L+ + G + KK +KDG+P   F 
Sbjct: 67  LGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGIPSAEFR 126

Query: 122 ANFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKH 181
             FLPI   + + +W+TFHG+YD+ YL+K M +I  +PESM EF I+    LG V DLKH
Sbjct: 127 RAFLPIFSSNRITKWITFHGIYDVAYLLKLM-MIRTMPESMVEFAIIAQRHLGTVNDLKH 186

Query: 182 MARFCEGLEDGKLGFK 197
           M R CE L +G+LG K
Sbjct: 187 MIRNCEYLMNGELGLK 201

[Close]

BLAST of Bhi03G001835 vs. TrEMBL
Match: tr|A0A0A0KTU4|A0A0A0KTU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 83/196 (42.35%), Postives = 123/196 (62.76%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW  N   E++  ++ L    ++ +D EF GF+R +PRG+ +E  Y D +FNVN  K++Q
Sbjct: 8   VWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLKILQ 67

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQN-GVDLKKLKKDGMPIKLFA 121
           LG+T  D++ H+G +W F FS F+ + D    +S+ +L+ N G + KK +KDG+P   F 
Sbjct: 68  LGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSAEFR 127

Query: 122 ANFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKH 181
             FLPI   + + +W+TFHG+YD+ YL+K M +I  +PESM EF I+    LG V DLK+
Sbjct: 128 RAFLPIFSSNRITKWITFHGIYDVAYLLKLM-IIKAMPESMVEFAIIAQRFLGTVNDLKY 187

Query: 182 MARFCEGLEDGKLGFK 197
           M   CE L  G+LG K
Sbjct: 188 MIGHCERLMKGELGLK 202

[Close]

BLAST of Bhi03G001835 vs. TrEMBL
Match: tr|M5XNP9|M5XNP9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025149mg PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 84/196 (42.86%), Postives = 122/196 (62.24%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWA NF  E+S+FD CL    ++S D EF GF+R +PR ++E+  Y+D +FNV   KL+Q
Sbjct: 6   VWAHNFHQELSQFDHCLHRFPVISFDTEFPGFLRDTPRDALEDHRYEDVKFNVESLKLLQ 65

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG T  D   +IGGTWEF+ S FN K+D    +S+S L++NG+D  +L + G+ +  F  
Sbjct: 66  LGFTLSDAHGNIGGTWEFHLSGFNEKSDPHVVASISLLKRNGLDFARLGQFGISVAEFVF 125

Query: 122 NFLPIIRKH---NVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDL 181
            FL ++R H   +   WV FHGLYD+ YL+K +     LP S+  F   +    GI+ D+
Sbjct: 126 GFLRVLRIHRGLHDLTWVCFHGLYDLAYLLKFL-TQKPLPNSVVMFAKALGVVFGIIYDV 185

Query: 182 KHMARFCEGLEDGKLG 195
           K MAR+C+G   G++G
Sbjct: 186 KFMARYCKGFFGGEIG 200

[Close]

BLAST of Bhi03G001835 vs. NCBI nr
Match: XP_004147072.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypothetical protein Csa_2G270190 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 5.0e-74
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWASNFD EI++FDECLRFH+IL+ID EF GFI +SPRGSI++  Y DF FNVNQTKLIQ
Sbjct: 19  VWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSIDDELYKDFCFNVNQTKLIQ 78

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LGITA DD   IGG+WEFNFS F+ +ADA    ++ FLE NG+DLKK+KKDG+PI  F  
Sbjct: 79  LGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNGLDLKKMKKDGIPIASFTK 138

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHM 181
            FLPI+RK ++FRWVTFHGLYDI YLIKAMGLI VLP+SMEEF  VV+N +GIVRDLKHM
Sbjct: 139 KFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFATVVVNEVGIVRDLKHM 198

Query: 182 ARFCEGLED-GKLGFK 197
           A+FCEGL+D G+LG +
Sbjct: 199 AKFCEGLDDHGRLGLE 214

[Close]

BLAST of Bhi03G001835 vs. NCBI nr
Match: XP_022947867.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 118/195 (60.51%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWASNFD EI + + CL+ + ILSID EF G IR +P GSI+E  Y+D +FNVNQTKLIQ
Sbjct: 19  VWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSIDERVYEDLRFNVNQTKLIQ 78

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG+TA D+S  + G+WEFNFS F+ + D Q  SS++FLEQNG+D  KLKK G+P+ LF  
Sbjct: 79  LGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNGLDFAKLKKQGIPLSLFTL 138

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHM 181
           NF  IIR+  V +WVTFHGLYDI YL+KAMG+   LPESMEEF  +V  G+G+VRDLK +
Sbjct: 139 NFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFAEMVARGVGVVRDLKEV 198

Query: 182 ARFCEGLEDGKLGFK 197
           AR+CEGLE G++G +
Sbjct: 199 ARWCEGLEQGRVGLE 213

[Close]

BLAST of Bhi03G001835 vs. NCBI nr
Match: XP_023533171.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 119/195 (61.03%), Postives = 148/195 (75.90%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWASNFD EI + + CL+ + ILSID EF G IR +P GSI+E  Y+D +FNVNQTKLIQ
Sbjct: 19  VWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSIDERVYEDLRFNVNQTKLIQ 78

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG+TA D+S  + G+WEFNFS F+ + D Q  SS+SFLEQNG+D  KLKK G+P+ LF  
Sbjct: 79  LGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSISFLEQNGLDFAKLKKQGIPLSLFTL 138

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHM 181
            F  IIR+  V +WVTFHGLYDI YL+KAMG+   LPESMEEF  +V  G+G+VRDLK +
Sbjct: 139 KFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFAEMVARGVGVVRDLKEV 198

Query: 182 ARFCEGLEDGKLGFK 197
           AR+CEGLE GK+G +
Sbjct: 199 ARWCEGLEQGKVGLE 213

[Close]

BLAST of Bhi03G001835 vs. NCBI nr
Match: XP_022146113.1 (putative CCR4-associated factor 1 homolog 8 [Momordica charantia])

HSP 1 Score: 246.9 bits (629), Expect = 5.7e-62
Identity = 117/195 (60.00%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VW+ NFD E++  ++CL  + IL+ID EF GFIR +P G+IEE  YDDF+FNVN+TKLIQ
Sbjct: 19  VWSRNFDLELANLNDCLNLYPILTIDTEFPGFIRSTPWGAIEEKLYDDFRFNVNRTKLIQ 78

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG+TA D+  +IG TWEFNFS F+ + D   +SSVSFL+QNG+D  KLK+ G+PI  F +
Sbjct: 79  LGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNGLDFDKLKEFGIPINEFTS 138

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHM 181
               + RKH + RWVTFHGLYDI YL+KAMG+   +PESMEEF  +V   LG V DLKHM
Sbjct: 139 KAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEEFAELVERALGNVSDLKHM 198

Query: 182 ARFCEGLEDGKLGFK 197
           A+FCEGLEDGKLG +
Sbjct: 199 AQFCEGLEDGKLGLE 213

[Close]

BLAST of Bhi03G001835 vs. NCBI nr
Match: XP_023533172.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 113/195 (57.95%), Postives = 146/195 (74.87%), Query Frame = 0


Query: 2   VWASNFDFEISKFDECLRFHSILSIDIEFLGFIRKSPRGSIEEAFYDDFQFNVNQTKLIQ 61
           VWA N D EI + D CL  +S++SID EF G I+++P G+I+E  Y DF+FNVNQTK+IQ
Sbjct: 18  VWAYNLDHEIIRLDRCLLSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVIQ 77

Query: 62  LGITACDDSSHIGGTWEFNFSYFNSKADAQGSSSVSFLEQNGVDLKKLKKDGMPIKLFAA 121
           LG+T  D+  +IGGTWEFNFS F+ + DA   +S+ FL+QNG+D  KLKKDG+ ++ FA 
Sbjct: 78  LGVTVSDEVGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIQVRKFAI 137

Query: 122 NFLPIIRKHNVFRWVTFHGLYDIEYLIKAMGLIIVLPESMEEFTIVVMNGLGIVRDLKHM 181
            FL  IRKH ++RWVTFHGLYDI YL+ AMG++  LPE++ EF  +V   +G VRDLKHM
Sbjct: 138 RFLYTIRKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGTVRDLKHM 197

Query: 182 ARFCEGLEDGKLGFK 197
           ARFCEGLE G LG +
Sbjct: 198 ARFCEGLEGGNLGLE 212

The following BLAST results are available for this feature:

BLAST of Bhi03G001835 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LXM4\|CAF1H_ARATH	6.1e-31	41.18	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|O64773\|CAF1E_ARATH	3.3e-29	39.68	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9C6M9\|CAF1D_ARATH	1.4e-27	39.15	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9SHJ0\|CAF1A_ARATH	3.1e-27	36.65	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9SFX6\|CAF1C_ARATH	7.0e-27	38.10	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Bhi03G001835 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44240.1	3.4e-32	41.18	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	1.8e-30	39.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	7.8e-29	39.15	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G06450.1	1.7e-28	36.65	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	3.9e-28	38.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Bhi03G001835 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPP0\|A0A0A0LPP0_CUCSA	3.3e-74	70.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=4 SV=1	[more]
tr\|A0A1S4E611\|A0A1S4E611_CUCME	1.3e-51	66.23	putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC107992...	[more]
tr\|A0A1S3BY95\|A0A1S3BY95_CUCME	3.3e-42	43.88	putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC103494...	[more]
tr\|A0A0A0KTU4\|A0A0A0KTU4_CUCSA	1.5e-39	42.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=4 SV=1	[more]
tr\|M5XNP9\|M5XNP9_PRUPE	1.9e-37	42.86	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025149m...	[more]

BLAST of Bhi03G001835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147072.1	5.0e-74	70.41	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN619...	[more]
XP_022947867.1	1.5e-62	60.51	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_023533171.1	1.5e-62	61.03	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022146113.1	5.7e-62	60.00	putative CCR4-associated factor 1 homolog 8 [Momordica charantia]	[more]
XP_023533172.1	4.1e-60	57.95	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf
IPR006941	RNase_CAF1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001835	Bhi03M001835	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 2..115 e-value: 1.8E-8 score: 33.8
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 1..195 e-value: 2.7E-44 score: 153.2
None	No IPR available	PANTHER	PTHR10797:SF16	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 1-RELATED	coord: 2..195
None	No IPR available	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 2..195
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 2..190

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G001835	Silver-seed gourd	carwgoB0747
Bhi03G001835	Cucurbita maxima (Rimu)	cmawgoB0799
Bhi03G001835	Cucumber (Gy14) v1	cgywgoB695
Bhi03G001835	Cucumber (Gy14) v2	cgybwgoB387
Bhi03G001835	Cucurbita maxima (Rimu)	cmawgoB1071
Bhi03G001835	Cucurbita moschata (Rifu)	cmowgoB0791
Bhi03G001835	Cucurbita moschata (Rifu)	cmowgoB1064
Bhi03G001835	Cucurbita pepo (Zucchini)	cpewgoB0085
Bhi03G001835	Cucurbita pepo (Zucchini)	cpewgoB0598
Bhi03G001835	Wild cucumber (PI 183967)	cpiwgoB408
Bhi03G001835	Cucumber (Chinese Long) v3	cucwgoB410
Bhi03G001835	Cucumber (Chinese Long) v2	cuwgoB406
Bhi03G001835	Bottle gourd (USVL1VR-Ls)	lsiwgoB169
Bhi03G001835	Melon (DHL92) v3.6.1	medwgoB659
Bhi03G001835	Melon (DHL92) v3.5.1	mewgoB652
Bhi03G001835	Watermelon (Charleston Gray)	wcgwgoB384
Bhi03G001835	Watermelon (97103) v2	wgowmbB424
Bhi03G001835	Watermelon (97103) v1	wgowmB439
Bhi03G001835	Silver-seed gourd	carwgoB0372