Bhi03G000934 (gene) Wax gourd

NameBhi03G000934
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr3 : 25121171 .. 25121413 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGATAGGCTACAGGAGGTGTTCGAGATCTTAGAATCAATGCAACAAACATTGAAGGATTACCTGCAAGGATGTGAAGATAGAGAAAGAGAAAGAAGACTAGCAACCATGAAAGAAGAGAAGGAAAATCTTATTCGAAAACTATCCAGACAAGTTCGAAAAGTGGCTGGAAGACGAAGATCCTACCCTAGGGCACGGATCGATCAGGCCAGAAGAAAAGGAAGGAGAAGCCTTCGATGA

mRNA sequence

ATGTATGATAGGCTACAGGAGGTGTTCGAGATCTTAGAATCAATGCAACAAACATTGAAGGATTACCTGCAAGGATGTGAAGATAGAGAAAGAGAAAGAAGACTAGCAACCATGAAAGAAGAGAAGGAAAATCTTATTCGAAAACTATCCAGACAAGTTCGAAAAGTGGCTGGAAGACGAAGATCCTACCCTAGGGCACGGATCGATCAGGCCAGAAGAAAAGGAAGGAGAAGCCTTCGATGA

Coding sequence (CDS)

ATGTATGATAGGCTACAGGAGGTGTTCGAGATCTTAGAATCAATGCAACAAACATTGAAGGATTACCTGCAAGGATGTGAAGATAGAGAAAGAGAAAGAAGACTAGCAACCATGAAAGAAGAGAAGGAAAATCTTATTCGAAAACTATCCAGACAAGTTCGAAAAGTGGCTGGAAGACGAAGATCCTACCCTAGGGCACGGATCGATCAGGCCAGAAGAAAAGGAAGGAGAAGCCTTCGATGA

Protein sequence

MYDRLQEVFEILESMQQTLKDYLQGCEDRERERRLATMKEEKENLIRKLSRQVRKVAGRRRSYPRARIDQARRKGRRSLR
BLAST of Bhi03G000934 vs. TrEMBL
Match: tr|A0A0A0KXP3|A0A0A0KXP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G090330 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 15 MQQTLKDYLQGCEDRERERR---LATMKEEKENLIRKLSRQVRKVAGRRRSYPR------ 74
          MQQTLKDY QGC  R +ER    LAT++ +KENL++KLS QVRKVA RRRSY R      
Sbjct: 1  MQQTLKDYKQGCAHRVKEREERTLATIQVKKENLVQKLSSQVRKVASRRRSYLRLLPKKL 60

Query: 75 ARIDQARRKGRR 78
           RI Q  +K RR
Sbjct: 61 RRIKQPSKKERR 72

BLAST of Bhi03G000934 vs. NCBI nr
Match: KGN53614.1 (hypothetical protein Csa_4G090330 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 15 MQQTLKDYLQGCEDRERERR---LATMKEEKENLIRKLSRQVRKVAGRRRSYPR------ 74
          MQQTLKDY QGC  R +ER    LAT++ +KENL++KLS QVRKVA RRRSY R      
Sbjct: 1  MQQTLKDYKQGCAHRVKEREERTLATIQVKKENLVQKLSSQVRKVASRRRSYLRLLPKKL 60

Query: 75 ARIDQARRKGRR 78
           RI Q  +K RR
Sbjct: 61 RRIKQPSKKERR 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KXP3|A0A0A0KXP3_CUCSA7.8e-0658.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G090330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN53614.11.2e-0558.33hypothetical protein Csa_4G090330 [Cucumis sativus][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M000934Bhi03M000934mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..80