Bhi03G000374 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G000374
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Peptidoglycan-binding lysin domain-containing protein
Location	chr3 : 9759610 .. 9759807 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGGCAGAAGCAGGCTTGGAGTTGCAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGCTCATACATTCAAGCTCTCCACTCAACACTTCAATTTTATCAATCCAAATCTTAATTGCTCTGCTCTCTTTATTGGCCAATGGCTCTGTCTCGATGCCTTCCTTACCATTCCTTAG

mRNA sequence

ATGGCTGAGGCAGAAGCAGGCTTGGAGTTGCAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGCTCATACATTCAAGCTCTCCACTCAACACTTCAATTTTATCAATCCAAATCTTAATTGCTCTGCTCTCTTTATTGGCCAATGGCTCTGTCTCGATGCCTTCCTTACCATTCCTTAG

Coding sequence (CDS)

ATGGCTGAGGCAGAAGCAGGCTTGGAGTTGCAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGCTCATACATTCAAGCTCTCCACTCAACACTTCAATTTTATCAATCCAAATCTTAATTGCTCTGCTCTCTTTATTGGCCAATGGCTCTGTCTCGATGCCTTCCTTACCATTCCTTAG

Protein sequence

MAEAEAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLTIP

Homology

[Close]

BLAST of Bhi03G000374 vs. TrEMBL
Match: tr|A0A1S4DTB4|A0A1S4DTB4_CUCME (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 4  AEAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLT 63
          AE  LELQCNK YGVK+GDTCF LAHTFKLST HFNFINPNLNCSALF+GQWLC++AFLT
Sbjct: 31 AEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

[Close]

BLAST of Bhi03G000374 vs. TrEMBL
Match: tr|A0A0A0KHZ8|A0A0A0KHZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 5  EAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLTI 64
          EAGLELQCNKVYGVKNGDTCFDL   FK++T HF+FINPNLNC+ LFIGQWLCLDA L +
Sbjct: 38 EAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLIL 97

Query: 65 P 66
          P
Sbjct: 98 P 98

[Close]

BLAST of Bhi03G000374 vs. TrEMBL
Match: tr|A0A0A0KLD2|A0A0A0KLD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 5  EAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLT 64
          EA LELQCNK YGVK+GDTCF +A  FKL+T HF+FINPNLNCSALF+ QWLC++AFLT
Sbjct: 37 EASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

[Close]

BLAST of Bhi03G000374 vs. TrEMBL
Match: tr|M1C1H7|M1C1H7_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 9  ELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFL 63
          E++C+KV  VK+GDTCFD++HTF L +  FN INPNL C+ALF+GQWLC+D  L
Sbjct: 39 EIECSKVVNVKDGDTCFDVSHTFGLGSDEFNAINPNLKCTALFVGQWLCVDGTL 92

[Close]

BLAST of Bhi03G000374 vs. TrEMBL
Match: tr|A0A2P6Q3H5|A0A2P6Q3H5_ROSCH (Putative LysM domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0006161 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10  LQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLT 64
           L+C+ VYGV +GDTCF++A TFKL+   F  +NPNLNCSALFIGQWLCLD  LT
Sbjct: 56  LECDSVYGVISGDTCFEVAKTFKLTLALFETLNPNLNCSALFIGQWLCLDGKLT 109

[Close]

BLAST of Bhi03G000374 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 4  AEAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLT 63
          AE  LELQCNK YGVK+GDTCF LAHTFKLST HFNFINPNLNCSALF+GQWLC++AFLT
Sbjct: 31 AEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

[Close]

BLAST of Bhi03G000374 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_6G516910 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 5  EAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLTI 64
          EAGLELQCNKVYGVKNGDTCFDL   FK++T HF+FINPNLNC+ LFIGQWLCLDA L +
Sbjct: 38 EAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLIL 97

Query: 65 P 66
          P
Sbjct: 98 P 98

[Close]

BLAST of Bhi03G000374 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_6G516900 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 5  EAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLT 64
          EA LELQCNK YGVK+GDTCF +A  FKL+T HF+FINPNLNCSALF+ QWLC++AFLT
Sbjct: 37 EASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

[Close]

BLAST of Bhi03G000374 vs. NCBI nr
Match: PRQ28730.1 (putative LysM domain-containing protein [Rosa chinensis])

HSP 1 Score: 85.5 bits (210), Expect = 7.3e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10  LQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAFLT 64
           L+C+ VYGV +GDTCF++A TFKL+   F  +NPNLNCSALFIGQWLCLD  LT
Sbjct: 56  LECDSVYGVISGDTCFEVAKTFKLTLALFETLNPNLNCSALFIGQWLCLDGKLT 109

[Close]

BLAST of Bhi03G000374 vs. NCBI nr
Match: KZV16033.1 (hypothetical protein F511_26162 [Dorcoceras hygrometricum])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 2  AEAEAGLELQCNKVYGVKNGDTCFDLAHTFKLSTQHFNFINPNLNCSALFIGQWLCLDAF 61
          A+++A + L CN V  V  GDTCFD+A +F L+T  F+ INPN+NC ALF+GQWLC+D F
Sbjct: 35 AKSKASVTLVCNSVTAVNKGDTCFDIAKSFNLTTAEFHAINPNVNCDALFVGQWLCIDGF 94

The following BLAST results are available for this feature:

BLAST of Bhi03G000374 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi03G000374 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi03G000374 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DTB4\|A0A1S4DTB4_CUCME	1.1e-23	85.00	lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
tr\|A0A0A0KHZ8\|A0A0A0KHZ8_CUCSA	1.3e-22	80.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1	[more]
tr\|A0A0A0KLD2\|A0A0A0KLD2_CUCSA	2.0e-20	76.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1	[more]
tr\|M1C1H7\|M1C1H7_SOLTU	3.7e-14	62.96	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|A0A2P6Q3H5\|A0A2P6Q3H5_ROSCH	4.8e-14	68.52	Putative LysM domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]

BLAST of Bhi03G000374 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899229.1	1.7e-23	85.00	PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]	[more]
KGN49183.1	1.9e-22	80.33	hypothetical protein Csa_6G516910 [Cucumis sativus]	[more]
KGN49182.1	3.0e-20	76.27	hypothetical protein Csa_6G516900 [Cucumis sativus]	[more]
PRQ28730.1	7.3e-14	68.52	putative LysM domain-containing protein [Rosa chinensis]	[more]
KZV16033.1	1.6e-13	56.67	hypothetical protein F511_26162 [Dorcoceras hygrometricum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036779	LysM_dom_sf
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000374	Bhi03M000374	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 15..59 e-value: 2.7E-4 score: 30.3
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 16..58 e-value: 3.4E-7 score: 30.1
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 14..58 score: 12.111
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 14..58 e-value: 2.85516E-7 score: 41.3169
IPR036779	LysM domain superfamily	GENE3D	G3DSA:3.10.350.10		coord: 11..59 e-value: 1.4E-15 score: 58.9
None	No IPR available	PANTHER	PTHR34997	FAMILY NOT NAMED	coord: 3..61
None	No IPR available	SUPERFAMILY	SSF54106	LysM domain	coord: 12..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi03G000374	Csa6G516900	Cucumber (Chinese Long) v2	cuwgoB628
Bhi03G000374	ClCG01G022510	Watermelon (Charleston Gray)	wcgwgoB227
Bhi03G000374	CSPI06G34180	Wild cucumber (PI 183967)	cpiwgoB634
Bhi03G000374	Lsi01G003580	Bottle gourd (USVL1VR-Ls)	lsiwgoB168
Bhi03G000374	CsGy6G033810	Cucumber (Gy14) v2	cgybwgoB598
Bhi03G000374	CsaV3_6G049680	Cucumber (Chinese Long) v3	cucwgoB648

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G000374	Cucumber (Gy14) v1	cgywgoB230
Bhi03G000374	Cucumber (Gy14) v1	cgywgoB291
Bhi03G000374	Cucumber (Gy14) v2	cgybwgoB020
Bhi03G000374	Cucurbita maxima (Rimu)	cmawgoB0246
Bhi03G000374	Cucurbita maxima (Rimu)	cmawgoB0517
Bhi03G000374	Cucurbita maxima (Rimu)	cmawgoB0669
Bhi03G000374	Cucurbita maxima (Rimu)	cmawgoB0788
Bhi03G000374	Cucurbita maxima (Rimu)	cmawgoB1058
Bhi03G000374	Cucurbita moschata (Rifu)	cmowgoB0240
Bhi03G000374	Cucurbita pepo (Zucchini)	cpewgoB0097
Bhi03G000374	Cucurbita moschata (Rifu)	cmowgoB0514
Bhi03G000374	Cucurbita moschata (Rifu)	cmowgoB0667
Bhi03G000374	Cucurbita moschata (Rifu)	cmowgoB0781
Bhi03G000374	Cucurbita moschata (Rifu)	cmowgoB1051
Bhi03G000374	Cucurbita pepo (Zucchini)	cpewgoB0607
Bhi03G000374	Cucurbita pepo (Zucchini)	cpewgoB0632
Bhi03G000374	Wild cucumber (PI 183967)	cpiwgoB023
Bhi03G000374	Wild cucumber (PI 183967)	cpiwgoB699
Bhi03G000374	Cucumber (Chinese Long) v3	cucwgoB026
Bhi03G000374	Cucumber (Chinese Long) v3	cucwgoB711
Bhi03G000374	Cucumber (Chinese Long) v2	cuwgoB023
Bhi03G000374	Cucumber (Chinese Long) v2	cuwgoB687
Bhi03G000374	Bottle gourd (USVL1VR-Ls)	lsiwgoB130
Bhi03G000374	Bottle gourd (USVL1VR-Ls)	lsiwgoB234
Bhi03G000374	Melon (DHL92) v3.6.1	medwgoB159
Bhi03G000374	Melon (DHL92) v3.6.1	medwgoB641
Bhi03G000374	Melon (DHL92) v3.6.1	medwgoB237
Bhi03G000374	Melon (DHL92) v3.5.1	mewgoB156
Bhi03G000374	Melon (DHL92) v3.5.1	mewgoB236
Bhi03G000374	Melon (DHL92) v3.5.1	mewgoB635
Bhi03G000374	Watermelon (Charleston Gray)	wcgwgoB310
Bhi03G000374	Watermelon (Charleston Gray)	wcgwgoB335
Bhi03G000374	Watermelon (97103) v2	wgowmbB402
Bhi03G000374	Watermelon (97103) v2	wgowmbB421
Bhi03G000374	Watermelon (97103) v1	wgowmB420
Bhi03G000374	Watermelon (97103) v1	wgowmB432
Bhi03G000374	Watermelon (97103) v1	wgowmB460
Bhi03G000374	Silver-seed gourd	carwgoB0759
Bhi03G000374	Silver-seed gourd	carwgoB1026
Bhi03G000374	Silver-seed gourd	carwgoB1075
Bhi03G000374	Silver-seed gourd	carwgoB1098
Bhi03G000374	Wax gourd	wgowgoB112
Bhi03G000374	Cucumber (Gy14) v1	cgywgoB026