Bhi03G000342 (gene) Wax gourd

Overview
NameBhi03G000342
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionCysteine desulfurase mitochondrial-like
Locationchr3 : 8917999 .. 8918187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATTGTTTGGTTGGAAATTTCTTGACTTCTCGGATCATTGCACCTAGAATAATAAAGAATGTTTTTGCGAATGCATGGAGAACAAAAATTAACTTCAATATCGACAGTCTTGGGCAAAACCTTTTTCTTATCAGATTTAATTCATTGACGGACAAGGAAACGATGCTAAAATTAGGTCCGTGA

mRNA sequence

ATGGATCATTGTTTGGTTGGAAATTTCTTGACTTCTCGGATCATTGCACCTAGAATAATAAAGAATGTTTTTGCGAATGCATGGAGAACAAAAATTAACTTCAATATCGACAGTCTTGGGCAAAACCTTTTTCTTATCAGATTTAATTCATTGACGGACAAGGAAACGATGCTAAAATTAGGTCCGTGA

Coding sequence (CDS)

ATGGATCATTGTTTGGTTGGAAATTTCTTGACTTCTCGGATCATTGCACCTAGAATAATAAAGAATGTTTTTGCGAATGCATGGAGAACAAAAATTAACTTCAATATCGACAGTCTTGGGCAAAACCTTTTTCTTATCAGATTTAATTCATTGACGGACAAGGAAACGATGCTAAAATTAGGTCCGTGA

Protein sequence

MDHCLVGNFLTSRIIAPRIIKNVFANAWRTKINFNIDSLGQNLFLIRFNSLTDKETMLKLGP
Homology
[Close]
BLAST of Bhi03G000342 vs. TrEMBL
Match: tr|A0A1Q3BMQ4|A0A1Q3BMQ4_CEPFO (DUF4283 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12817 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 5  LVGNFLTSRIIAPRIIKNVFANAWRTKINFNIDSLGQNLFLIRFNSLTDKETMLKLGP 63
          L+G+  TS+     I+KN   + WRTK    I  +G N+FL  FN+  D+  +LKLGP
Sbjct: 13 LIGSLWTSKTFNKEILKNTMRSLWRTKFGRRIRDVGNNIFLFMFNNEKDRAKVLKLGP 70

[Close]
BLAST of Bhi03G000342 vs. TrEMBL
Match: tr|A0A2K3PMS8|A0A2K3PMS8_TRIPR (Cysteine desulfurase mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g013305 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 0 

Query: 5  LVGNFLTSRIIAPRIIKNVFANAWRTKINFNIDSLGQNLFLIRFNSLTDKETMLKLGP 63
          LVG   T+     RI K V   AWR K    I  L +NLFL RF+S  D ET+L+ GP
Sbjct: 35 LVGKLWTTNPFNGRIFKQVIVQAWRLKNPVEIQDLNKNLFLFRFSSKRDLETVLRNGP 92

[Close]
BLAST of Bhi03G000342 vs. NCBI nr
Match: GAV69316.1 (DUF4283 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 5  LVGNFLTSRIIAPRIIKNVFANAWRTKINFNIDSLGQNLFLIRFNSLTDKETMLKLGP 63
          L+G+  TS+     I+KN   + WRTK    I  +G N+FL  FN+  D+  +LKLGP
Sbjct: 13 LIGSLWTSKTFNKEILKNTMRSLWRTKFGRRIRDVGNNIFLFMFNNEKDRAKVLKLGP 70

The following BLAST results are available for this feature:
BLAST of Bhi03G000342 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi03G000342 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi03G000342 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1Q3BMQ4|A0A1Q3BMQ4_CEPFO1.5e-0441.38DUF4283 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_... [more]
tr|A0A2K3PMS8|A0A2K3PMS8_TRIPR7.3e-0446.55Cysteine desulfurase mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g... [more]
BLAST of Bhi03G000342 vs. NCBI nr
Match NameE-valueIdentityDescription
GAV69316.12.2e-0441.38DUF4283 domain-containing protein [Cephalotus follicularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025558DUF4283
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M000342Bhi03M000342mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 2..62
e-value: 5.3E-11
score: 42.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G000342Cucumber (Gy14) v1cgywgoB026
Bhi03G000342Cucumber (Gy14) v1cgywgoB230
Bhi03G000342Cucumber (Gy14) v2cgybwgoB020
Bhi03G000342Cucumber (Gy14) v2cgybwgoB598
Bhi03G000342Cucurbita maxima (Rimu)cmawgoB0246
Bhi03G000342Cucurbita maxima (Rimu)cmawgoB0517
Bhi03G000342Cucurbita maxima (Rimu)cmawgoB0788
Bhi03G000342Cucurbita maxima (Rimu)cmawgoB1058
Bhi03G000342Cucurbita moschata (Rifu)cmowgoB0240
Bhi03G000342Cucurbita pepo (Zucchini)cpewgoB0097
Bhi03G000342Cucurbita moschata (Rifu)cmowgoB0514
Bhi03G000342Cucurbita moschata (Rifu)cmowgoB0781
Bhi03G000342Cucurbita moschata (Rifu)cmowgoB1051
Bhi03G000342Cucurbita pepo (Zucchini)cpewgoB0034
Bhi03G000342Cucurbita pepo (Zucchini)cpewgoB0607
Bhi03G000342Cucurbita pepo (Zucchini)cpewgoB0632
Bhi03G000342Wild cucumber (PI 183967)cpiwgoB023
Bhi03G000342Wild cucumber (PI 183967)cpiwgoB634
Bhi03G000342Cucumber (Chinese Long) v3cucwgoB026
Bhi03G000342Cucumber (Chinese Long) v3cucwgoB648
Bhi03G000342Cucumber (Chinese Long) v2cuwgoB023
Bhi03G000342Cucumber (Chinese Long) v2cuwgoB628
Bhi03G000342Bottle gourd (USVL1VR-Ls)lsiwgoB168
Bhi03G000342Bottle gourd (USVL1VR-Ls)lsiwgoB234
Bhi03G000342Melon (DHL92) v3.6.1medwgoB159
Bhi03G000342Melon (DHL92) v3.6.1medwgoB641
Bhi03G000342Melon (DHL92) v3.5.1mewgoB156
Bhi03G000342Melon (DHL92) v3.5.1mewgoB635
Bhi03G000342Watermelon (Charleston Gray)wcgwgoB227
Bhi03G000342Watermelon (Charleston Gray)wcgwgoB335
Bhi03G000342Watermelon (97103) v2wgowmbB402
Bhi03G000342Watermelon (97103) v2wgowmbB421
Bhi03G000342Watermelon (97103) v1wgowmB420
Bhi03G000342Watermelon (97103) v1wgowmB432
Bhi03G000342Silver-seed gourdcarwgoB0189
Bhi03G000342Silver-seed gourdcarwgoB0759
Bhi03G000342Silver-seed gourdcarwgoB1075
Bhi03G000342Silver-seed gourdcarwgoB1098