Bhi03G000253 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G000253
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ATP synthase subunit alpha
Location	chr3 : 6855255 .. 6855629 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGAGGCAAGGAATTCCATCAAATGTTCGTTGTTCAATATCTCGGCTGCTCAAGAAGTTGGACTAGCTGCTCCTCCGACCCGACCCAGAGTGGATTCTAGGAGAAGAGAAGGGAATGCTTTGGAATATTCCATTCTTATAGCAGCCACCACTTCGGATCTTGCTCCTCTTCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCACGAAAATGGAATGCCCCCTATTCCTTCGATCGAAACTGGCACTGCCTTCCTTTATCAGACAACTATTCGAGTTTCACTTTTTCTACCGGGCAGAGCTACAAAAGTGGATTCACCCAAAATCTTCAGAGAGCGTCCACCCCTAGCCGTACCACATTAA

mRNA sequence

GGTGAGGCAAGGAATTCCATCAAATGTTCGTTGTTCAATATCTCGGCTGCTCAAGAAGTTGGACTAGCTGCTCCTCCGACCCGACCCAGAGTGGATTCTAGGAGAAGAGAAGGGAATGCTTTGGAATATTCCATTCTTATAGCAGCCACCACTTCGGATCTTGCTCCTCTTCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCACGAAAATGGAATGCCCCCTATTCCTTCGATCGAAACTGGCACTGCCTTCCTTTATCAGACAACTATTCGAGTTTCACTTTTTCTACCGGGCAGAGCTACAAAAGTGGATTCACCCAAAATCTTCAGAGAGCGTCCACCCCTAGCCGTACCACATTAA

Coding sequence (CDS)

GGTGAGGCAAGGAATTCCATCAAATGTTCGTTGTTCAATATCTCGGCTGCTCAAGAAGTTGGACTAGCTGCTCCTCCGACCCGACCCAGAGTGGATTCTAGGAGAAGAGAAGGGAATGCTTTGGAATATTCCATTCTTATAGCAGCCACCACTTCGGATCTTGCTCCTCTTCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCACGAAAATGGAATGCCCCCTATTCCTTCGATCGAAACTGGCACTGCCTTCCTTTATCAGACAACTATTCGAGTTTCACTTTTTCTACCGGGCAGAGCTACAAAAGTGGATTCACCCAAAATCTTCAGAGAGCGTCCACCCCTAGCCGTACCACATTAA

Protein sequence

GEARNSIKCSLFNISAAQEVGLAAPPTRPRVDSRRREGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGMPPIPSIETGTAFLYQTTIRVSLFLPGRATKVDSPKIFRERPPLAVPH

Homology

[Close]

BLAST of Bhi03G000253 vs. Swiss-Prot
Match: sp|P05492|ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-14
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           EGNALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. Swiss-Prot
Match: sp|P92549|ATPAM_ARATH (ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATPA PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. Swiss-Prot
Match: sp|Q06735|ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. Swiss-Prot
Match: sp|P68542|ATPAM_BRACM (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. Swiss-Prot
Match: sp|P22201|ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. TAIR10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 77.0 bits (188), Expect = 9.0e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 495 EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 535

[Close]

BLAST of Bhi03G000253 vs. TAIR10
Match: ATMG01190.1 (ATP synthase subunit 1)

HSP 1 Score: 77.0 bits (188), Expect = 9.0e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 36  REGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYF 73
           +E  A+EY+I++A T    A LQ+LAPY+G A+ EYF
Sbjct: 214 QERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYF 250

[Close]

BLAST of Bhi03G000253 vs. TrEMBL
Match: tr|A0A164XS93|A0A164XS93_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016773 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.2e-14
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGMPPIPSIETGTAFLYQTTIR 96
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM   P +ET ++ +Y   + 
Sbjct: 48  EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMNWSPMVETSSSEIYLKNL- 107

Query: 97  VSLFLPGRAT 107
            + FL   AT
Sbjct: 108 -TSFLRSAAT 115

[Close]

BLAST of Bhi03G000253 vs. TrEMBL
Match: tr|E5DKD8|E5DKD8_9MAGN (ATP synthase subunit alpha (Fragment) OS=Myrothamnus flabellifolia OX=83223 GN=atp1 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.0e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SDLAPLQFLAPYSGCAMGEYF +NGM
Sbjct: 171 EANALEYSILVAATASDLAPLQFLAPYSGCAMGEYFRDNGM 211

[Close]

BLAST of Bhi03G000253 vs. TrEMBL
Match: tr|M8BVG5|M8BVG5_AEGTA (ATP synthase subunit alpha OS=Aegilops tauschii OX=37682 GN=F775_13294 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL AATTSDLAPLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EANALEYSILEAATTSDLAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. TrEMBL
Match: tr|D0QLF3|D0QLF3_9CARY (ATP synthase subunit alpha (Fragment) OS=Silene gallinyi OX=663347 GN=atp1 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           EGNALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 175 EGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 215

[Close]

BLAST of Bhi03G000253 vs. TrEMBL
Match: tr|Q7M2G6|Q7M2G6_OENVI (ATP synthase subunit alpha OS=Oenothera villaricae OX=3941 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           EGNALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 225 EGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 265

[Close]

BLAST of Bhi03G000253 vs. NCBI nr
Match: KZM93528.1 (hypothetical protein DCAR_016773 [Daucus carota subsp. sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGMPPIPSIETGTAFLYQTTIR 96
           E NALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM   P +ET ++ +Y   + 
Sbjct: 48  EANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMNWSPMVETSSSEIYLKNL- 107

Query: 97  VSLFLPGRAT 107
            + FL   AT
Sbjct: 108 -TSFLRSAAT 115

[Close]

BLAST of Bhi03G000253 vs. NCBI nr
Match: ADL63256.1 (Atp1, partial (mitochondrion) [Myrothamnus flabellifolia])

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           E NALEYSIL+AAT SDLAPLQFLAPYSGCAMGEYF +NGM
Sbjct: 171 EANALEYSILVAATASDLAPLQFLAPYSGCAMGEYFRDNGM 211

[Close]

BLAST of Bhi03G000253 vs. NCBI nr
Match: AAF16978.1 (ATPase alpha subunit, partial (mitochondrion) [Cocculus trilobus])

HSP 1 Score: 79.3 bits (194), Expect = 9.9e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           EGNALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 195 EGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 235

[Close]

BLAST of Bhi03G000253 vs. NCBI nr
Match: AAF16977.1 (ATPase alpha subunit, partial (mitochondrion) [Cissampelos pareira])

HSP 1 Score: 79.3 bits (194), Expect = 9.9e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           EGNALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 196 EGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 236

[Close]

BLAST of Bhi03G000253 vs. NCBI nr
Match: AAW33103.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Plantago rugelii])

HSP 1 Score: 79.3 bits (194), Expect = 9.9e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 37  EGNALEYSILIAATTSDLAPLQFLAPYSGCAMGEYFHENGM 78
           EGNALEYSIL+AAT SD APLQFLAPYSGCAMGEYF +NGM
Sbjct: 184 EGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGM 224

The following BLAST results are available for this feature:

BLAST of Bhi03G000253 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P05492\|ATPAM_OENBI	3.3e-14	87.80	ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P...	[more]
sp\|P92549\|ATPAM_ARATH	1.6e-13	85.37	ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATP...	[more]
sp\|Q06735\|ATPAM_BETVU	1.6e-13	85.37	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
sp\|P68542\|ATPAM_BRACM	1.6e-13	85.37	ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA...	[more]
sp\|P22201\|ATPAM_BRANA	1.6e-13	85.37	ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3...	[more]

BLAST of Bhi03G000253 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07698.1	9.0e-15	85.37	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	9.0e-15	85.37	ATP synthase subunit 1	[more]
ATCG00120.1	3.8e-05	51.35	ATP synthase subunit alpha	[more]

BLAST of Bhi03G000253 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A164XS93\|A0A164XS93_DAUCA	9.2e-14	61.43	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016773 ...	[more]
tr\|E5DKD8\|E5DKD8_9MAGN	5.0e-12	87.80	ATP synthase subunit alpha (Fragment) OS=Myrothamnus flabellifolia OX=83223 GN=a...	[more]
tr\|M8BVG5\|M8BVG5_AEGTA	6.6e-12	90.24	ATP synthase subunit alpha OS=Aegilops tauschii OX=37682 GN=F775_13294 PE=3 SV=1	[more]
tr\|D0QLF3\|D0QLF3_9CARY	6.6e-12	87.80	ATP synthase subunit alpha (Fragment) OS=Silene gallinyi OX=663347 GN=atp1 PE=4 ...	[more]
tr\|Q7M2G6\|Q7M2G6_OENVI	6.6e-12	87.80	ATP synthase subunit alpha OS=Oenothera villaricae OX=3941 PE=3 SV=1	[more]

BLAST of Bhi03G000253 vs. NCBI nr


Match Name	E-value	Identity	Description
KZM93528.1	1.4e-13	61.43	hypothetical protein DCAR_016773 [Daucus carota subsp. sativus]	[more]
ADL63256.1	7.6e-12	87.80	Atp1, partial (mitochondrion) [Myrothamnus flabellifolia]	[more]
AAF16978.1	9.9e-12	87.80	ATPase alpha subunit, partial (mitochondrion) [Cocculus trilobus]	[more]
AAF16977.1	9.9e-12	87.80	ATPase alpha subunit, partial (mitochondrion) [Cissampelos pareira]	[more]
AAW33103.1	9.9e-12	87.80	F1-ATPase alpha subunit, partial (mitochondrion) [Plantago rugelii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR000194	ATPase_F1/V1/A1_a/bsu_nucl-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000253	Bhi03M000253	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.12240		coord: 30..78 e-value: 5.3E-9 score: 37.2
None	No IPR available	PANTHER	PTHR43089	FAMILY NOT NAMED	coord: 36..77
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	PFAM	PF00006	ATP-synt_ab	coord: 36..77 e-value: 2.0E-5 score: 24.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 35..88

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G000253	Wax gourd	wgowgoB108
Bhi03G000253	Cucumber (Gy14) v1	cgywgoB026
Bhi03G000253	Cucumber (Gy14) v1	cgywgoB438
Bhi03G000253	Cucumber (Gy14) v2	cgybwgoB019
Bhi03G000253	Cucumber (Gy14) v2	cgybwgoB598
Bhi03G000253	Cucurbita maxima (Rimu)	cmawgoB0246
Bhi03G000253	Cucurbita maxima (Rimu)	cmawgoB0800
Bhi03G000253	Cucurbita maxima (Rimu)	cmawgoB1058
Bhi03G000253	Cucurbita moschata (Rifu)	cmowgoB0240
Bhi03G000253	Cucurbita moschata (Rifu)	cmowgoB0793
Bhi03G000253	Cucurbita moschata (Rifu)	cmowgoB1051
Bhi03G000253	Cucurbita pepo (Zucchini)	cpewgoB0086
Bhi03G000253	Cucurbita pepo (Zucchini)	cpewgoB0607
Bhi03G000253	Cucurbita pepo (Zucchini)	cpewgoB0633
Bhi03G000253	Wild cucumber (PI 183967)	cpiwgoB022
Bhi03G000253	Wild cucumber (PI 183967)	cpiwgoB634
Bhi03G000253	Cucumber (Chinese Long) v3	cucwgoB025
Bhi03G000253	Cucumber (Chinese Long) v3	cucwgoB648
Bhi03G000253	Cucumber (Chinese Long) v2	cuwgoB022
Bhi03G000253	Cucumber (Chinese Long) v2	cuwgoB628
Bhi03G000253	Bottle gourd (USVL1VR-Ls)	lsiwgoB168
Bhi03G000253	Bottle gourd (USVL1VR-Ls)	lsiwgoB234
Bhi03G000253	Melon (DHL92) v3.6.1	medwgoB159
Bhi03G000253	Melon (DHL92) v3.6.1	medwgoB641
Bhi03G000253	Melon (DHL92) v3.5.1	mewgoB156
Bhi03G000253	Melon (DHL92) v3.5.1	mewgoB635
Bhi03G000253	Watermelon (Charleston Gray)	wcgwgoB227
Bhi03G000253	Watermelon (Charleston Gray)	wcgwgoB334
Bhi03G000253	Watermelon (97103) v2	wgowmbB402
Bhi03G000253	Watermelon (97103) v2	wgowmbB420
Bhi03G000253	Watermelon (97103) v1	wgowmB418
Bhi03G000253	Watermelon (97103) v1	wgowmB432
Bhi03G000253	Silver-seed gourd	carwgoB0657
Bhi03G000253	Silver-seed gourd	carwgoB0759
Bhi03G000253	Silver-seed gourd	carwgoB0935
Bhi03G000253	Silver-seed gourd	carwgoB1098