Bhi02G001317 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G001317
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribonuclease H
Location	chr2 : 42293185 .. 42293496 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGGATGATCAATGGGTATGGCATTATGATAAGCGAGGGGAGTATTCAGTCAAAAGTGGGTAAATGTGCTATTATCAAAGGCCTTGTTGATAGAGGTTCTTGCTCGATATCTCAATCTGATTGGTGGCATCATCTTTGGAAGCTTCATATTCCAAGCAAGGTAGCCATATTTGTGTGGAAATTGTGTTATGATTGTCTCTCTACTGAGGCCTCATTGCAAAGACAGAAGTTGGAGACTGTGTCGTGGTGCCCGATGTGTAGAAAGAAGGAAGAATTTGTGGGCCATGTCCTCTTTTGGTGCCATTGA

mRNA sequence

ATGGTAGGGATGATCAATGGGTATGGCATTATGATAAGCGAGGGGAGTATTCAGTCAAAAGTGGGTAAATGTGCTATTATCAAAGGCCTTGTTGATAGAGGTTCTTGCTCGATATCTCAATCTGATTGGTGGCATCATCTTTGGAAGCTTCATATTCCAAGCAAGGTAGCCATATTTGTGTGGAAATTGTGTTATGATTGTCTCTCTACTGAGGCCTCATTGCAAAGACAGAAGTTGGAGACTGTGTCGTGGTGCCCGATGTGTAGAAAGAAGGAAGAATTTGTGGGCCATGTCCTCTTTTGGTGCCATTGA

Coding sequence (CDS)

ATGGTAGGGATGATCAATGGGTATGGCATTATGATAAGCGAGGGGAGTATTCAGTCAAAAGTGGGTAAATGTGCTATTATCAAAGGCCTTGTTGATAGAGGTTCTTGCTCGATATCTCAATCTGATTGGTGGCATCATCTTTGGAAGCTTCATATTCCAAGCAAGGTAGCCATATTTGTGTGGAAATTGTGTTATGATTGTCTCTCTACTGAGGCCTCATTGCAAAGACAGAAGTTGGAGACTGTGTCGTGGTGCCCGATGTGTAGAAAGAAGGAAGAATTTGTGGGCCATGTCCTCTTTTGGTGCCATTGA

Protein sequence

MVGMINGYGIMISEGSIQSKVGKCAIIKGLVDRGSCSISQSDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETVSWCPMCRKKEEFVGHVLFWCH

Homology

[Close]

BLAST of Bhi02G001317 vs. TAIR10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.5e-04
Identity = 18/56 (32.14%), Postives = 30/56 (53.57%), Query Frame = 0


Query: 47  LWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETVSWCPMCRKKEEFVGHVLFWC 103
           +WKL    K+  F+WKL    L+T  +L+R+ +     C  C +++E   H+ F C
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDC 73

[Close]

BLAST of Bhi02G001317 vs. TAIR10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 40.8 bits (94), Expect = 5.9e-04
Identity = 18/62 (29.03%), Postives = 30/62 (48.39%), Query Frame = 0


Query: 41  SDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETVSWCPMCRKKEEFVGHVLF 100
           ++W   +W L I  K+ + +WK   + L   A L  + +    +C  CR  E  + H+LF
Sbjct: 3   NNWIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFET-ITHILF 62

Query: 101 WC 103
            C
Sbjct: 63  NC 63

[Close]

BLAST of Bhi02G001317 vs. TrEMBL
Match: tr|A0A0B2R5I6|A0A0B2R5I6_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_032870 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-09
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 34  GSCSISQSDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETV-SWCPMCRKKE 93
           G+ +++Q D +  LW + +PSK+AIF W+L  D L T   LQR++++   + CP+CR +E
Sbjct: 3   GAAAVTQEDCFAKLWSIKVPSKIAIFAWRLIRDRLPTRHKLQRRQVQVADTSCPLCRVEE 62

Query: 94  EFVGHVLFWC 103
           E  GH+ F C
Sbjct: 63  ENAGHLFFHC 72

[Close]

BLAST of Bhi02G001317 vs. TrEMBL
Match: tr|A0A0B2PUJ0|A0A0B2PUJ0_GLYSO (Putative ribonuclease H protein OS=Glycine soja OX=3848 GN=glysoja_036036 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-09
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 34  GSCSISQSDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETV-SWCPMCRKKE 93
           G+ +++Q D +  LW + +PSK+AIF W+L  D L T   LQR++++   + CP+CR +E
Sbjct: 147 GAAAVTQEDCFAKLWSIKVPSKIAIFAWRLIRDRLPTRHKLQRRQVQVADTSCPLCRVEE 206

Query: 94  EFVGHVLFWC 103
           E  GH+ F C
Sbjct: 207 ENAGHLFFHC 216

[Close]

BLAST of Bhi02G001317 vs. TrEMBL
Match: tr|A0A2P4MLK0|A0A2P4MLK0_QUESU (Ribonuclease p protein subunit p29 OS=Quercus suber OX=58331 GN=CFP56_42366 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 43  WWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETVSWCPMCRKKEEFVGHVLFWC 102
           WW  LWKL IP+KV  FVW+ C + L T+A+L R+K+ +   C  CR+  E   H LF+C
Sbjct: 3   WWKKLWKLEIPNKVKNFVWRTCKEVLPTKANLSRRKIVSDGTCDKCRRHSEDSSHALFFC 62

[Close]

BLAST of Bhi02G001317 vs. TrEMBL
Match: tr|A0A2P4LW34|A0A2P4LW34_QUESU (Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_10850 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 26  IIKGLVD---RGSCSISQ--SDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLE 85
           + K LV+   +G+ S S   S +W  +W++++P KV IF W++C D L T  +L+R+ L 
Sbjct: 62  VAKDLVESEAKGASSSSHLASPFWRKIWQVNVPPKVKIFAWRVCLDGLPTMLNLRRRGLN 121

Query: 86  TVSWCPMCRKKEEFVGHVLFWCH 104
           T  +C +C K+ E + H LF C+
Sbjct: 122 TAGFCQICDKELESISHALFHCN 144

[Close]

BLAST of Bhi02G001317 vs. TrEMBL
Match: tr|A0A2P4LWZ3|A0A2P4LWZ3_QUESU (Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_10851 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 26  IIKGLVD---RGSCSISQ--SDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLE 85
           + K LV+   +G+ S S   S +W  +W++++P KV IF W++C D L T  +L+R+ L 
Sbjct: 62  VAKDLVESEAKGASSSSHLASPFWRKIWQVNVPPKVKIFAWRVCLDGLPTMLNLRRRGLN 121

Query: 86  TVSWCPMCRKKEEFVGHVLFWCH 104
           T  +C +C K+ E + H LF C+
Sbjct: 122 TAGFCQICDKELESISHALFHCN 144

[Close]

BLAST of Bhi02G001317 vs. NCBI nr
Match: KHN11339.1 (Putative ribonuclease H protein [Glycine soja])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 34  GSCSISQSDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETV-SWCPMCRKKE 93
           G+ +++Q D +  LW + +PSK+AIF W+L  D L T   LQR++++   + CP+CR +E
Sbjct: 147 GAAAVTQEDCFAKLWSIKVPSKIAIFAWRLIRDRLPTRHKLQRRQVQVADTSCPLCRVEE 206

Query: 94  EFVGHVLFWC 103
           E  GH+ F C
Sbjct: 207 ENAGHLFFHC 216

[Close]

BLAST of Bhi02G001317 vs. NCBI nr
Match: KHN27102.1 (hypothetical protein glysoja_032870 [Glycine soja])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 34  GSCSISQSDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETV-SWCPMCRKKE 93
           G+ +++Q D +  LW + +PSK+AIF W+L  D L T   LQR++++   + CP+CR +E
Sbjct: 3   GAAAVTQEDCFAKLWSIKVPSKIAIFAWRLIRDRLPTRHKLQRRQVQVADTSCPLCRVEE 62

Query: 94  EFVGHVLFWC 103
           E  GH+ F C
Sbjct: 63  ENAGHLFFHC 72

[Close]

BLAST of Bhi02G001317 vs. NCBI nr
Match: POF18436.1 (ribonuclease p protein subunit p29 [Quercus suber])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 43  WWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLETVSWCPMCRKKEEFVGHVLFWC 102
           WW  LWKL IP+KV  FVW+ C + L T+A+L R+K+ +   C  CR+  E   H LF+C
Sbjct: 3   WWKKLWKLEIPNKVKNFVWRTCKEVLPTKANLSRRKIVSDGTCDKCRRHSEDSSHALFFC 62

[Close]

BLAST of Bhi02G001317 vs. NCBI nr
Match: POF09672.1 (putative ribonuclease h protein [Quercus suber])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 26  IIKGLVD---RGSCSISQ--SDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLE 85
           + K LV+   +G+ S S   S +W  +W++++P KV IF W++C D L T  +L+R+ L 
Sbjct: 62  VAKDLVESEAKGASSSSHLASPFWRKIWQVNVPPKVKIFAWRVCLDGLPTMLNLRRRGLN 121

Query: 86  TVSWCPMCRKKEEFVGHVLFWCH 104
           T  +C +C K+ E + H LF C+
Sbjct: 122 TAGFCQICDKELESISHALFHCN 144

[Close]

BLAST of Bhi02G001317 vs. NCBI nr
Match: POF09673.1 (putative ribonuclease h protein [Quercus suber])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 26  IIKGLVD---RGSCSISQ--SDWWHHLWKLHIPSKVAIFVWKLCYDCLSTEASLQRQKLE 85
           + K LV+   +G+ S S   S +W  +W++++P KV IF W++C D L T  +L+R+ L 
Sbjct: 62  VAKDLVESEAKGASSSSHLASPFWRKIWQVNVPPKVKIFAWRVCLDGLPTMLNLRRRGLN 121

Query: 86  TVSWCPMCRKKEEFVGHVLFWCH 104
           T  +C +C K+ E + H LF C+
Sbjct: 122 TAGFCQICDKELESISHALFHCN 144

The following BLAST results are available for this feature:

BLAST of Bhi02G001317 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi02G001317 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25270.1	4.5e-04	32.14	Ribonuclease H-like superfamily protein	[more]
AT3G26855.1	5.9e-04	29.03	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

BLAST of Bhi02G001317 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0B2R5I6\|A0A0B2R5I6_GLYSO	5.7e-09	41.43	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_032870 PE=4 SV=1	[more]
tr\|A0A0B2PUJ0\|A0A0B2PUJ0_GLYSO	5.7e-09	41.43	Putative ribonuclease H protein OS=Glycine soja OX=3848 GN=glysoja_036036 PE=4 S...	[more]
tr\|A0A2P4MLK0\|A0A2P4MLK0_QUESU	7.4e-09	46.67	Ribonuclease p protein subunit p29 OS=Quercus suber OX=58331 GN=CFP56_42366 PE=4...	[more]
tr\|A0A2P4LW34\|A0A2P4LW34_QUESU	9.6e-09	37.35	Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_10850 PE=4 SV...	[more]
tr\|A0A2P4LWZ3\|A0A2P4LWZ3_QUESU	9.6e-09	37.35	Putative ribonuclease h protein OS=Quercus suber OX=58331 GN=CFP56_10851 PE=4 SV...	[more]

BLAST of Bhi02G001317 vs. NCBI nr


Match Name	E-value	Identity	Description
KHN11339.1	8.5e-09	41.43	Putative ribonuclease H protein [Glycine soja]	[more]
KHN27102.1	8.5e-09	41.43	hypothetical protein glysoja_032870 [Glycine soja]	[more]
POF18436.1	1.1e-08	46.67	ribonuclease p protein subunit p29 [Quercus suber]	[more]
POF09672.1	1.5e-08	37.35	putative ribonuclease h protein [Quercus suber]	[more]
POF09673.1	1.5e-08	37.35	putative ribonuclease h protein [Quercus suber]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001317	Bhi02M001317	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 39..103 e-value: 1.3E-13 score: 51.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G001317	Cucumber (Gy14) v1	cgywgoB282
Bhi02G001317	Cucumber (Gy14) v2	cgybwgoB094
Bhi02G001317	Cucurbita maxima (Rimu)	cmawgoB0078
Bhi02G001317	Cucurbita maxima (Rimu)	cmawgoB0166
Bhi02G001317	Cucurbita moschata (Rifu)	cmowgoB0072
Bhi02G001317	Cucurbita moschata (Rifu)	cmowgoB0159
Bhi02G001317	Cucurbita pepo (Zucchini)	cpewgoB0468
Bhi02G001317	Cucurbita pepo (Zucchini)	cpewgoB0882
Bhi02G001317	Cucumber (Chinese Long) v2	cuwgoB096
Bhi02G001317	Bottle gourd (USVL1VR-Ls)	lsiwgoB520
Bhi02G001317	Watermelon (Charleston Gray)	wcgwgoB362
Bhi02G001317	Watermelon (97103) v2	wgowmbB630
Bhi02G001317	Watermelon (97103) v1	wgowmB653
Bhi02G001317	Silver-seed gourd	carwgoB0221
Bhi02G001317	Silver-seed gourd	carwgoB0568