Bhi02G001311 (gene) Wax gourd

Overview
NameBhi02G001311
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Locationchr2 : 42204189 .. 42204584 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCCGAAGAGATAAGAGACTTTGTTATAGGTGCGATGAATCGGTGGGTGATCATTGCAAAAGAAAAAAAAAAAAGGAGCTGAACTTACTGATTCACCACGATGAAGAAGATGGCGAGATGCCTAATGAAGCAATGAAGGAAGCGGCTGTAGTCGAAGAAGTTACCCCAGCTATACTAGAAACGTTAGTCATCGACCCAAGGGAAGTTGAATCGGCAAAATTATCGCTCAATTCATTGGCTGGGTTAGACTCGCCTAAAACGATGAAATTAGTAGGCACGATAGGGGAAAGGGACGTGGTAGTGCTAATTGACAATGGAGCATCCTGCAACTTTATTGATGAAGAACTTGTAAAATCACTTAATCTACCTCGTTCCGCAACTTCAAGCTAA

mRNA sequence

ATGCAGAGCCGAAGAGATAAGAGACTTTGTTATAGGTGCGATGAATCGGTGGGTGATCATTGCAAAAGAAAAAAAAAAAAGGAGCTGAACTTACTGATTCACCACGATGAAGAAGATGGCGAGATGCCTAATGAAGCAATGAAGGAAGCGGCTGTAGTCGAAGAAGTTACCCCAGCTATACTAGAAACGTTAGTCATCGACCCAAGGGAAGTTGAATCGGCAAAATTATCGCTCAATTCATTGGCTGGGTTAGACTCGCCTAAAACGATGAAATTAGTAGGCACGATAGGGGAAAGGGACGTGGTAGTGCTAATTGACAATGGAGCATCCTGCAACTTTATTGATGAAGAACTTGTAAAATCACTTAATCTACCTCGTTCCGCAACTTCAAGCTAA

Coding sequence (CDS)

ATGCAGAGCCGAAGAGATAAGAGACTTTGTTATAGGTGCGATGAATCGGTGGGTGATCATTGCAAAAGAAAAAAAAAAAAGGAGCTGAACTTACTGATTCACCACGATGAAGAAGATGGCGAGATGCCTAATGAAGCAATGAAGGAAGCGGCTGTAGTCGAAGAAGTTACCCCAGCTATACTAGAAACGTTAGTCATCGACCCAAGGGAAGTTGAATCGGCAAAATTATCGCTCAATTCATTGGCTGGGTTAGACTCGCCTAAAACGATGAAATTAGTAGGCACGATAGGGGAAAGGGACGTGGTAGTGCTAATTGACAATGGAGCATCCTGCAACTTTATTGATGAAGAACTTGTAAAATCACTTAATCTACCTCGTTCCGCAACTTCAAGCTAA

Protein sequence

MQSRRDKRLCYRCDESVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTPAILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEELVKSLNLPRSATSS
Homology
[Close]
BLAST of Bhi02G001311 vs. TrEMBL
Match: tr|A5B2I6|A5B2I6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 1    MQSRRDKRLCYRCDE--SVGDHCKRKKKKELN-LLIHHDEE--DGEMPNEAMKEAAVVEE 60
            +Q+RR+K L ++C+E  S G  C    KKEL  LL+H DEE  D +  + A +E A++E 
Sbjct: 984  LQARREKGLWFKCEEKFSPGHRC----KKELRVLLVHEDEEEDDNQFDDRATEEPALIE- 1043

Query: 61   VTPAILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFID 120
                            ++ +LSLNS+ GL +P TMK+ GTIG ++V++L+D+GA+ NF+ 
Sbjct: 1044 --------------LKDAVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLS 1100

Query: 121  EELVKSLNLPRSATSS 132
             ELV+ L LP + T+S
Sbjct: 1104 LELVQQLTLPLTTTTS 1100

[Close]
BLAST of Bhi02G001311 vs. TrEMBL
Match: tr|E2DMZ5|E2DMZ5_BETVU (Uncharacterized protein OS=Beta vulgaris OX=161934 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 50/131 (38.17%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDE--SVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTP 60
           +Q +R+  LC+RCDE  ++G  C   KKKEL++L+ H+EE+ E         +++E + P
Sbjct: 342 LQYKREHGLCFRCDEKWAIGHRC---KKKELSILLGHEEEEEEY-------GSLMENIQP 401

Query: 61  AILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEEL 120
           A  +   +   E+ S ++SLNS+ G+ SPKT+K+ GTI  + V+V++D GA+ NFI  + 
Sbjct: 402 AHPDDSQL---EIHSPEISLNSVMGISSPKTLKMEGTIYGQKVIVMVDPGATHNFISLDT 459

Query: 121 VKSLNLPRSAT 130
           V+ L +P S++
Sbjct: 462 VRRLQIPISSS 459

[Close]
BLAST of Bhi02G001311 vs. TrEMBL
Match: tr|A0A1S4E5H0|A0A1S4E5H0_CUCME (uncharacterized protein LOC107992206 OS=Cucumis melo OX=3656 GN=LOC107992206 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = 0 

Query: 2   QSRRDKRLCYRCDE--SVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTPA 61
           Q R++K LC++C+E  SV   CK ++++EL + +  +  + E+  E   E+A        
Sbjct: 343 QLRKEKGLCFKCNEKYSVDHKCKMREQRELRMFVVKNNNELEIVEETETESAE------- 402

Query: 62  ILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEELV 121
            L    + P      +LS+NS+ GL+ P TMK+ G++  ++VV+LID GA+ NF+ E+LV
Sbjct: 403 -LRVAEVQPHTTACVELSINSVVGLNDPGTMKVRGSLQGKEVVILIDCGATHNFVSEKLV 462

Query: 122 KSLNLPRSATS 131
            SL LP   T+
Sbjct: 463 TSLQLPIKETA 465

[Close]
BLAST of Bhi02G001311 vs. TrEMBL
Match: tr|W9R4P8|W9R4P8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024737 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.7e-11
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDE--SVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTP 60
           +Q +R + LC+RCDE  S G  CK ++ + L +     + + ++  E+ + A V  E T 
Sbjct: 381 IQQKRARGLCFRCDEEFSPGHRCKLRQLQVLLVSGEDSDREEDLREESAEAATVQGETTK 440

Query: 61  AILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEEL 120
                         +  LSLNSL G  S KTMKL GTIG+R+VV+L+D+G S +FI  EL
Sbjct: 441 G-------------NVDLSLNSLWGFASAKTMKLRGTIGDREVVMLVDSGVSHSFILAEL 494

Query: 121 VKSLNLP 126
           V++L LP
Sbjct: 501 VRTLALP 494

[Close]
BLAST of Bhi02G001311 vs. TrEMBL
Match: tr|A0A087GEK8|A0A087GEK8_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA8G499800 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDESVGDHCKRK-KKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTPA 60
           M  R+   LC+RCDE    H + +  KKE+N+L+   +EDG    + + EA   ++ T A
Sbjct: 338 MAQRKADGLCFRCDEKW--HIRHQCPKKEVNVLL--VQEDGP---DILWEAD--DDFTDA 397

Query: 61  ILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEELV 120
                  D    E A+LSLNS+ G+ SP TMKL+GTI   +VVVLID+GAS NF+ E+LV
Sbjct: 398 ------TDQAITELAELSLNSMVGISSPSTMKLMGTIQTTEVVVLIDSGASHNFVSEQLV 454

Query: 121 KSLNLPRSATSS 132
             L L  + T S
Sbjct: 458 HRLGLQSAKTGS 454

[Close]
BLAST of Bhi02G001311 vs. NCBI nr
Match: XP_022881659.1 (uncharacterized protein LOC111398794 [Olea europaea var. sylvestris])

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 54/132 (40.91%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDESV--GDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTP 60
           +Q++++K LC+RCDE    G  C   + KE  +L+  +EE+ E+  E ++E         
Sbjct: 114 IQTKKEKGLCFRCDEKFQPGHKC---RNKEFQVLLVDEEEEREL--ERLEE--------- 173

Query: 61  AILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEEL 120
                 +ID  E+E  +LS+NS+ GL SPKTMK+ G +   DVVVLID+GA+ NFI  EL
Sbjct: 174 ------IIDCSELEGVELSMNSVVGLTSPKTMKVKGKVEGEDVVVLIDSGATHNFISWEL 225

Query: 121 VKSLNLPRSATS 131
           ++ LNLP + T+
Sbjct: 234 IRKLNLPITETN 225

[Close]
BLAST of Bhi02G001311 vs. NCBI nr
Match: CAN78588.1 (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 1    MQSRRDKRLCYRCDE--SVGDHCKRKKKKELN-LLIHHDEE--DGEMPNEAMKEAAVVEE 60
            +Q+RR+K L ++C+E  S G  C    KKEL  LL+H DEE  D +  + A +E A++E 
Sbjct: 984  LQARREKGLWFKCEEKFSPGHRC----KKELRVLLVHEDEEEDDNQFDDRATEEPALIE- 1043

Query: 61   VTPAILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFID 120
                            ++ +LSLNS+ GL +P TMK+ GTIG ++V++L+D+GA+ NF+ 
Sbjct: 1044 --------------LKDAVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLS 1100

Query: 121  EELVKSLNLPRSATSS 132
             ELV+ L LP + T+S
Sbjct: 1104 LELVQQLTLPLTTTTS 1100

[Close]
BLAST of Bhi02G001311 vs. NCBI nr
Match: ACY01928.1 (hypothetical protein [Beta vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 50/131 (38.17%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDE--SVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTP 60
           +Q +R+  LC+RCDE  ++G  C   KKKEL++L+ H+EE+ E         +++E + P
Sbjct: 342 LQYKREHGLCFRCDEKWAIGHRC---KKKELSILLGHEEEEEEY-------GSLMENIQP 401

Query: 61  AILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEEL 120
           A  +   +   E+ S ++SLNS+ G+ SPKT+K+ GTI  + V+V++D GA+ NFI  + 
Sbjct: 402 AHPDDSQL---EIHSPEISLNSVMGISSPKTLKMEGTIYGQKVIVMVDPGATHNFISLDT 459

Query: 121 VKSLNLPRSAT 130
           V+ L +P S++
Sbjct: 462 VRRLQIPISSS 459

[Close]
BLAST of Bhi02G001311 vs. NCBI nr
Match: XP_019103758.1 (PREDICTED: uncharacterized protein LOC109134462 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDE--SVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTP 60
           +Q +R++ LC+RCDE  +VG  C   KKKEL++L+ H+E + E  +        +E++ P
Sbjct: 358 LQYKRERGLCFRCDEKWTVGHKC---KKKELSVLLSHEEPEVEYGS--------LEDLDP 417

Query: 61  AILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEEL 120
              +T      E    ++SLNS+ G+ SPKT+KL GTI    VVV++D GA+ NFI  + 
Sbjct: 418 --FDTPTSPNPEPPQPEISLNSVMGISSPKTLKLAGTINGESVVVMVDPGATHNFISTDT 477

Query: 121 VKSLNLPRSATSS 132
           V+ L LP + + S
Sbjct: 478 VQHLQLPITPSKS 477

[Close]
BLAST of Bhi02G001311 vs. NCBI nr
Match: XP_019103759.1 (PREDICTED: uncharacterized protein LOC109134462 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 0 

Query: 1   MQSRRDKRLCYRCDE--SVGDHCKRKKKKELNLLIHHDEEDGEMPNEAMKEAAVVEEVTP 60
           +Q +R++ LC+RCDE  +VG  C   KKKEL++L+ H+E + E  +        +E++ P
Sbjct: 358 LQYKRERGLCFRCDEKWTVGHKC---KKKELSVLLSHEEPEVEYGS--------LEDLDP 417

Query: 61  AILETLVIDPREVESAKLSLNSLAGLDSPKTMKLVGTIGERDVVVLIDNGASCNFIDEEL 120
              +T      E    ++SLNS+ G+ SPKT+KL GTI    VVV++D GA+ NFI  + 
Sbjct: 418 --FDTPTSPNPEPPQPEISLNSVMGISSPKTLKLAGTINGESVVVMVDPGATHNFISTDT 477

Query: 121 VKSLNLPRSATSS 132
           V+ L LP + + S
Sbjct: 478 VQHLQLPITPSKS 477

The following BLAST results are available for this feature:
BLAST of Bhi02G001311 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi02G001311 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi02G001311 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5B2I6|A5B2I6_VITVI3.3e-1440.44Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1[more]
tr|E2DMZ5|E2DMZ5_BETVU1.7e-1338.17Uncharacterized protein OS=Beta vulgaris OX=161934 PE=4 SV=1[more]
tr|A0A1S4E5H0|A0A1S4E5H0_CUCME3.1e-1235.88uncharacterized protein LOC107992206 OS=Cucumis melo OX=3656 GN=LOC107992206 PE=... [more]
tr|W9R4P8|W9R4P8_9ROSA7.7e-1139.37Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024737 PE=4 SV=1[more]
tr|A0A087GEK8|A0A087GEK8_ARAAL1.0e-1043.18Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA8G499800 PE=4 SV=1[more]
BLAST of Bhi02G001311 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022881659.13.0e-1440.91uncharacterized protein LOC111398794 [Olea europaea var. sylvestris][more]
CAN78588.15.0e-1440.44hypothetical protein VITISV_043911 [Vitis vinifera][more]
ACY01928.12.5e-1338.17hypothetical protein [Beta vulgaris][more]
XP_019103758.11.6e-1239.10PREDICTED: uncharacterized protein LOC109134462 isoform X1 [Beta vulgaris subsp.... [more]
XP_019103759.11.6e-1239.10PREDICTED: uncharacterized protein LOC109134462 isoform X2 [Beta vulgaris subsp.... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom_sf
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi02M001311Bhi02M001311mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3DG3DSA:2.40.70.10coord: 74..131
e-value: 1.4E-5
score: 26.7
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 92..126
e-value: 5.90995E-8
score: 45.4052

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi02G001311Cucumber (Gy14) v1cgywgoB282
Bhi02G001311Cucumber (Gy14) v2cgybwgoB094
Bhi02G001311Cucurbita maxima (Rimu)cmawgoB0078
Bhi02G001311Cucurbita maxima (Rimu)cmawgoB0166
Bhi02G001311Cucurbita moschata (Rifu)cmowgoB0072
Bhi02G001311Cucurbita moschata (Rifu)cmowgoB0159
Bhi02G001311Cucurbita pepo (Zucchini)cpewgoB0468
Bhi02G001311Cucurbita pepo (Zucchini)cpewgoB0882
Bhi02G001311Cucumber (Chinese Long) v2cuwgoB096
Bhi02G001311Bottle gourd (USVL1VR-Ls)lsiwgoB520
Bhi02G001311Watermelon (Charleston Gray)wcgwgoB362
Bhi02G001311Watermelon (97103) v2wgowmbB630
Bhi02G001311Watermelon (97103) v1wgowmB653
Bhi02G001311Silver-seed gourdcarwgoB0221
Bhi02G001311Silver-seed gourdcarwgoB0568