Bhi02G001103 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G001103
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2 : 32710230 .. 32710626 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCAGAACCGGAACCGGCTCAGGGTCAAAGTACCCTAGTCATAATGACAATGAGTATGTTGAAGGTGATATAGGGGACTCAGGTGAAGTCAGAGATGATGACAGTGCAGTCAGGGATGATGGCAATAATGAAGCGCCCAGTGGTGCTCAGGGAACTGAAAATGAACAACAGTTGGGTACAGATCAACAGGTTGACAAGACCAATGAGATTGAGGTTGATGTTACCTTGGATTTGCCGATAGCTCTGCGAAAAGGTACTAGGTCATGCACTAAACACTCTATGACAAGCTTTTTGTCTTATAGTAACCTGTCTACGAGATTTACAGCTTTCACCACCAGCCTGGATAATGTGATAATTCCGGACAATGTGCACAAGGCTCCGAAAATTTCTGAATGA

mRNA sequence

CGTCAGAACCGGAACCGGCTCAGGGTCAAAGTACCCTAGTCATAATGACAATGAGTATGTTGAAGGTGATATAGGGGACTCAGGTGAAGTCAGAGATGATGACAGTGCAGTCAGGGATGATGGCAATAATGAAGCGCCCAGTGGTGCTCAGGGAACTGAAAATGAACAACAGTTGGGTACAGATCAACAGGTTGACAAGACCAATGAGATTGAGGTTGATGTTACCTTGGATTTGCCGATAGCTCTGCGAAAAGGTACTAGGTCATGCACTAAACACTCTATGACAAGCTTTTTGTCTTATAGTAACCTGTCTACGAGATTTACAGCTTTCACCACCAGCCTGGATAATGTGATAATTCCGGACAATGTGCACAAGGCTCCGAAAATTTCTGAATGA

Coding sequence (CDS)

CGTCAGAACCGGAACCGGCTCAGGGTCAAAGTACCCTAGTCATAATGACAATGAGTATGTTGAAGGTGATATAGGGGACTCAGGTGAAGTCAGAGATGATGACAGTGCAGTCAGGGATGATGGCAATAATGAAGCGCCCAGTGGTGCTCAGGGAACTGAAAATGAACAACAGTTGGGTACAGATCAACAGGTTGACAAGACCAATGAGATTGAGGTTGATGTTACCTTGGATTTGCCGATAGCTCTGCGAAAAGGTACTAGGTCATGCACTAAACACTCTATGACAAGCTTTTTGTCTTATAGTAACCTGTCTACGAGATTTACAGCTTTCACCACCAGCCTGGATAATGTGATAATTCCGGACAATGTGCACAAGGCTCCGAAAATTTCTGAATGA

Protein sequence

VRTGTGSGSKYPSHNDNEYVEGDIGDSGEVRDDDSAVRDDGNNEAPSGAQGTENEQQLGTDQQVDKTNEIEVDVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKAPKISE

Homology

[Close]

BLAST of Bhi02G001103 vs. TrEMBL
Match: tr|E5GC16|E5GC16_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 54  NEQQLGTDQQVDKTNEIEVDVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTS 113
           N+ + G   ++DK      D +LDLPIALRKGTRSCTKHS+++++SY NLS +F AFTTS
Sbjct: 116 NKVEQGHTGKIDK-----YDPSLDLPIALRKGTRSCTKHSISNYVSYENLSPQFRAFTTS 175

Query: 114 LDNVIIPDNVHKA 127
           LD+  IP N+H A
Sbjct: 176 LDSTTIPKNIHIA 183

[Close]

BLAST of Bhi02G001103 vs. TrEMBL
Match: tr|A5AKX1|A5AKX1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028559 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.5e-10
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           D+ LDLPIALRKGTR+CTKH +T ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 437 DLDLDLPIALRKGTRACTKHPITKYISYSNLSDNYKAFTTNISKLVVPRNIQEA 490

[Close]

BLAST of Bhi02G001103 vs. TrEMBL
Match: tr|A5APB2|A5APB2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019554 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           DV LDLPIALRKGTR+CTKH +  ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 422 DVDLDLPIALRKGTRACTKHPIAKYISYSNLSDNYRAFTTNISKLVVPRNIQEA 475

[Close]

BLAST of Bhi02G001103 vs. TrEMBL
Match: tr|A5ARM3|A5ARM3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042699 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           D+ LDLPIALRKGTR+CTKH +  ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 293 DLDLDLPIALRKGTRACTKHPVAKYISYSNLSDNYRAFTTNISKLVVPKNIQEA 346

[Close]

BLAST of Bhi02G001103 vs. TrEMBL
Match: tr|A5B683|A5B683_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_024984 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           D+ LDLPIALRKGTR+CTKH +  ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 442 DLDLDLPIALRKGTRACTKHPIVQYISYSNLSDNYRAFTTNISKLVVPRNIQEA 495

[Close]

BLAST of Bhi02G001103 vs. NCBI nr
Match: ADN34014.1 (reverse transcriptase [Cucumis melo subsp. melo])

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-11
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 54  NEQQLGTDQQVDKTNEIEVDVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTS 113
           N+ + G   ++DK      D +LDLPIALRKGTRSCTKHS+++++SY NLS +F AFTTS
Sbjct: 116 NKVEQGHTGKIDK-----YDPSLDLPIALRKGTRSCTKHSISNYVSYENLSPQFRAFTTS 175

Query: 114 LDNVIIPDNVHKA 127
           LD+  IP N+H A
Sbjct: 176 LDSTTIPKNIHIA 183

[Close]

BLAST of Bhi02G001103 vs. NCBI nr
Match: CAN62588.1 (hypothetical protein VITISV_028559 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           D+ LDLPIALRKGTR+CTKH +T ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 437 DLDLDLPIALRKGTRACTKHPITKYISYSNLSDNYKAFTTNISKLVVPRNIQEA 490

[Close]

BLAST of Bhi02G001103 vs. NCBI nr
Match: CAN60456.1 (hypothetical protein VITISV_019554 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           DV LDLPIALRKGTR+CTKH +  ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 422 DVDLDLPIALRKGTRACTKHPIAKYISYSNLSDNYRAFTTNISKLVVPRNIQEA 475

[Close]

BLAST of Bhi02G001103 vs. NCBI nr
Match: CAN82518.1 (hypothetical protein VITISV_042699 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 3.7e-09
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           D+ LDLPIALRKGTR+CTKH +  ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 293 DLDLDLPIALRKGTRACTKHPVAKYISYSNLSDNYRAFTTNISKLVVPKNIQEA 346

[Close]

BLAST of Bhi02G001103 vs. NCBI nr
Match: CAN76494.1 (hypothetical protein VITISV_024984 [Vitis vinifera])

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 73  DVTLDLPIALRKGTRSCTKHSMTSFLSYSNLSTRFTAFTTSLDNVIIPDNVHKA 127
           D+ LDLPIALRKGTR+CTKH +  ++SYSNLS  + AFTT++  +++P N+ +A
Sbjct: 442 DLDLDLPIALRKGTRACTKHPIVQYISYSNLSDNYRAFTTNISKLVVPRNIQEA 495

The following BLAST results are available for this feature:

BLAST of Bhi02G001103 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi02G001103 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi02G001103 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC16\|E5GC16_CUCME	1.5e-11	56.16	Reverse transcriptase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A5AKX1\|A5AKX1_VITVI	8.5e-10	57.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028559 PE=4 SV=1	[more]
tr\|A5APB2\|A5APB2_VITVI	1.4e-09	57.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019554 PE=4 SV=1	[more]
tr\|A5ARM3\|A5ARM3_VITVI	2.5e-09	55.56	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042699 PE=4 SV=1	[more]
tr\|A5B683\|A5B683_VITVI	3.2e-09	55.56	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_024984 PE=4 SV=1	[more]

BLAST of Bhi02G001103 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34014.1	2.3e-11	56.16	reverse transcriptase [Cucumis melo subsp. melo]	[more]
CAN62588.1	1.3e-09	57.41	hypothetical protein VITISV_028559 [Vitis vinifera]	[more]
CAN60456.1	2.2e-09	57.41	hypothetical protein VITISV_019554 [Vitis vinifera]	[more]
CAN82518.1	3.7e-09	55.56	hypothetical protein VITISV_042699 [Vitis vinifera]	[more]
CAN76494.1	4.9e-09	55.56	hypothetical protein VITISV_024984 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:1990918	double-strand break repair involved in meiotic recombination
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0007129	synapsis
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001103	Bhi02M001103	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G001103	Cucumber (Gy14) v1	cgywgoB709
Bhi02G001103	Cucumber (Gy14) v1	cgywgoB711
Bhi02G001103	Cucumber (Gy14) v2	cgybwgoB103
Bhi02G001103	Cucurbita maxima (Rimu)	cmawgoB0085
Bhi02G001103	Cucurbita maxima (Rimu)	cmawgoB0169
Bhi02G001103	Cucurbita moschata (Rifu)	cmowgoB0078
Bhi02G001103	Cucurbita moschata (Rifu)	cmowgoB0162
Bhi02G001103	Cucurbita pepo (Zucchini)	cpewgoB0019
Bhi02G001103	Cucurbita pepo (Zucchini)	cpewgoB0473
Bhi02G001103	Wild cucumber (PI 183967)	cpiwgoB092
Bhi02G001103	Wild cucumber (PI 183967)	cpiwgoB111
Bhi02G001103	Cucumber (Chinese Long) v3	cucwgoB098
Bhi02G001103	Cucumber (Chinese Long) v3	cucwgoB115
Bhi02G001103	Cucumber (Chinese Long) v2	cuwgoB090
Bhi02G001103	Cucumber (Chinese Long) v2	cuwgoB110
Bhi02G001103	Bottle gourd (USVL1VR-Ls)	lsiwgoB511
Bhi02G001103	Bottle gourd (USVL1VR-Ls)	lsiwgoB521
Bhi02G001103	Melon (DHL92) v3.6.1	medwgoB300
Bhi02G001103	Melon (DHL92) v3.6.1	medwgoB310
Bhi02G001103	Melon (DHL92) v3.5.1	mewgoB300
Bhi02G001103	Melon (DHL92) v3.5.1	mewgoB315
Bhi02G001103	Watermelon (Charleston Gray)	wcgwgoB366
Bhi02G001103	Watermelon (Charleston Gray)	wcgwgoB369
Bhi02G001103	Watermelon (97103) v2	wgowmbB635
Bhi02G001103	Watermelon (97103) v2	wgowmbB639
Bhi02G001103	Watermelon (97103) v1	wgowmB655
Bhi02G001103	Watermelon (97103) v1	wgowmB661
Bhi02G001103	Silver-seed gourd	carwgoB0646
Bhi02G001103	Silver-seed gourd	carwgoB1136