Bhi02G001099 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G001099
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr2 : 32572480 .. 32572920 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTCCCAAAGCTTCTACAATGGAGTGAACTCACACAGAATCCAGTTTGGAGAATTACAAGAGCCAATACTTCTATTACAAAACAAAGTGAGGATGCTACGAACACAGAACATCATAACGAAGATGTTGAAGTTCAATTCTATTCAGAACCAAGATATCCCAAGATTCAAGAAATTATGAGTAGGCCAAGCATTTCTTCCGAAACACGGCCAAATAGTCACACTTCCAGAGATATCCCCAAATCTAGGTCAATGAGAACTTCCGTATATTTTGAAAGATCGATTCCAGATATTCAGTATGAAAGGAACGAAGTTCTTTATCTCATCCTCAATTCGATATGGAAAGGAGATCAGAACCAATTTACAATCAAATTAATGTACTATCGACTTATGAGACTCCTGAGCAAAGATATGAGCGAAAGTACAGTCAATATATAG

mRNA sequence

ATGACTGTCCCAAAGCTTCTACAATGGAGTGAACTCACACAGAATCCAGTTTGGAGAATTACAAGAGCCAATACTTCTATTACAAAACAAAGTGAGGATGCTACGAACACAGAACATCATAACGAAGATGTTGAAGTTCAATTCTATTCAGAACCAAGATATCCCAAGATTCAAGAAATTATGAGTAGGCCAAGCATTTCTTCCGAAACACGGCCAAATAGTCACACTTCCAGAGATATCCCCAAATCTAGGTCAATGAGAACTTCCGTATATTTTGAAAGATCGATTCCAGATATTCAGTATGAAAGGAACGAAGTTCTTTATCTCATCCTCAATTCGATATGGAAAGGAGATCAGAACCAATTTACAATCAAATTAATGTACTATCGACTTATGAGACTCCTGAGCAAAGATATGAGCGAAAGTACAGTCAATATATAG

Coding sequence (CDS)

ATGACTGTCCCAAAGCTTCTACAATGGAGTGAACTCACACAGAATCCAGTTTGGAGAATTACAAGAGCCAATACTTCTATTACAAAACAAAGTGAGGATGCTACGAACACAGAACATCATAACGAAGATGTTGAAGTTCAATTCTATTCAGAACCAAGATATCCCAAGATTCAAGAAATTATGAGTAGGCCAAGCATTTCTTCCGAAACACGGCCAAATAGTCACACTTCCAGAGATATCCCCAAATCTAGGTCAATGAGAACTTCCGTATATTTTGAAAGATCGATTCCAGATATTCAGTATGAAAGGAACGAAGTTCTTTATCTCATCCTCAATTCGATATGGAAAGGAGATCAGAACCAATTTACAATCAAATTAATGTACTATCGACTTATGAGACTCCTGAGCAAAGATATGAGCGAAAGTACAGTCAATATATAG

Protein sequence

MTVPKLLQWSELTQNPVWRITRANTSITKQSEDATNTEHHNEDVEVQFYSEPRYPKIQEIMSRPSISSETRPNSHTSRDIPKSRSMRTSVYFERSIPDIQYERNEVLYLILNSIWKGDQNQFTIKLMYYRLMRLLSKDMSESTVNI

Homology

[Close]

BLAST of Bhi02G001099 vs. TrEMBL
Match: tr|A0A0A0M024|A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 1   MTVPKLLQWSELTQNPVWRITRANTSITKQSEDATNTEHHNEDVEVQFYSEPRYPKIQEI 60
           MT+P+ L W ELT+N +WR+      I + S +A+ TE  + +VEVQF ++  YP+I EI
Sbjct: 218 MTIPRTLHWKELTKNLIWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEI 277

Query: 61  MSRPSISSETRPNSHTSRDIPKSRSMRTSVYFERSIPDIQYERNE 106
           MS    +   R        + +S S+RTSV F RSIP++ YER +
Sbjct: 278 MSSRPSTFSIRLEVPYKDTLRRSESIRTSVDFTRSIPNVHYERED 322

[Close]

BLAST of Bhi02G001099 vs. NCBI nr
Match: KGN65521.1 (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 1   MTVPKLLQWSELTQNPVWRITRANTSITKQSEDATNTEHHNEDVEVQFYSEPRYPKIQEI 60
           MT+P+ L W ELT+N +WR+      I + S +A+ TE  + +VEVQF ++  YP+I EI
Sbjct: 218 MTIPRTLHWKELTKNLIWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEI 277

Query: 61  MSRPSISSETRPNSHTSRDIPKSRSMRTSVYFERSIPDIQYERNE 106
           MS    +   R        + +S S+RTSV F RSIP++ YER +
Sbjct: 278 MSSRPSTFSIRLEVPYKDTLRRSESIRTSVDFTRSIPNVHYERED 322

The following BLAST results are available for this feature:

BLAST of Bhi02G001099 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi02G001099 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi02G001099 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M024\|A0A0A0M024_CUCSA	1.7e-11	40.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1	[more]

BLAST of Bhi02G001099 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65521.1	2.6e-11	40.95	hypothetical protein Csa_1G434190 [Cucumis sativus]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001099	Bhi02M001099	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G001099	Silver-seed gourd	carwgoB0646
Bhi02G001099	Silver-seed gourd	carwgoB1136
Bhi02G001099	Cucumber (Gy14) v1	cgywgoB711
Bhi02G001099	Cucumber (Gy14) v2	cgybwgoB103
Bhi02G001099	Cucurbita maxima (Rimu)	cmawgoB0085
Bhi02G001099	Cucurbita maxima (Rimu)	cmawgoB0169
Bhi02G001099	Cucurbita moschata (Rifu)	cmowgoB0078
Bhi02G001099	Cucurbita moschata (Rifu)	cmowgoB0162
Bhi02G001099	Cucurbita pepo (Zucchini)	cpewgoB0019
Bhi02G001099	Cucurbita pepo (Zucchini)	cpewgoB0473
Bhi02G001099	Wild cucumber (PI 183967)	cpiwgoB111
Bhi02G001099	Cucumber (Chinese Long) v3	cucwgoB115
Bhi02G001099	Cucumber (Chinese Long) v2	cuwgoB110
Bhi02G001099	Bottle gourd (USVL1VR-Ls)	lsiwgoB511
Bhi02G001099	Bottle gourd (USVL1VR-Ls)	lsiwgoB521
Bhi02G001099	Melon (DHL92) v3.6.1	medwgoB300
Bhi02G001099	Melon (DHL92) v3.6.1	medwgoB310
Bhi02G001099	Melon (DHL92) v3.5.1	mewgoB300
Bhi02G001099	Melon (DHL92) v3.5.1	mewgoB315
Bhi02G001099	Watermelon (Charleston Gray)	wcgwgoB366
Bhi02G001099	Watermelon (Charleston Gray)	wcgwgoB369
Bhi02G001099	Watermelon (97103) v2	wgowmbB639
Bhi02G001099	Watermelon (97103) v1	wgowmB655
Bhi02G001099	Watermelon (97103) v1	wgowmB661