Bhi02G001055 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G001055
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	pentatricopeptide repeat-containing protein At1g08610
Location	chr2 : 30350467 .. 30353373 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACAAAGGGTTAAATGTAAAAACGGATCTAAAGCCCTAGTTATGGCCCCTCGTCAAACTTTATCAGCAGCTGGAATTAAGAAGCAAGCTTCTCTTACTCGCTATCTCCGCTCCATTCTTCGAAACCACTCGGTATGTTTCTTGAATCTTCAAGTTCTTCTTGTTAATTCGCTTTATTTTAATGTTCTTTTCTTCCTCGCTAATTGTTCTTTCATACTTGGATTTTCTGGGAATTTTCTGTTGTTGTTGGATTACCCATTATCTTAATTATCACTTTTTGATTCTCTGATACTGAGTTTCTTGCTTCAATTTCGTGCATTAGATGCCTTTTTTTTTTCACTCTTTCCGGATTGTTTTGTTTGTGATTGTATGCTTTTCATCTTTATCATTTCCTAGGTTCTGAAAATCTACTTTAATCTGCTTATGTGCAGAAGGAAGTAACAAATTCACTTTTGGGTCAGAGTAAGTGAGCTATTTCGATTAAGTTTCAGTTAATCATTAGTTAGTTTCAGTTGAAATGAAGCAGCTGATTACTGGGTATTGATTATCTCCTTCCCTTAAGAGCTTTGAAGCACTGCCCTTTACTTTGAGTTTGTTATGGCGTATACATTGACCGTTCAGAATTATATGGTAACAGTTAATGGTCTGCATGAATGTTCCAAACAAGAGTATGCTAATACTGGTATTGGCCAATGCTCGTTGGAAAAAGAAAAACCATCTTCTTTACACTTAAATTGTTTTTGTAAGTCTAGTTGCAGTAGTTCATATAGCTGTCATATGAGTACAACTCTTGGTTTAGGAAGAAAACAACACGTTTTACATTGTAAAGGATTGCAGAGGAGTGTATGCATTGATAGAGTTGATGATGCATATGAAGATGAATTGGCATTGAATGGTCACGAGACAACGGTTGAGAGAAATTTTGTTGAGAAAATGACTAAAAAGAAGCTCAGTTCTCATAATGGTTCAGCATTGTATTTGGATGGGCCTTTTGTTGGAAATGATGAAGAAACCAACAATGAGATTCTACAAAAATTCTGCAACAAGGGGAAGTTGATGGAAGCATCTAGGTTAGTTGATATTATGGCTCGTCGGAACCAGATTCCAGAGTTCCATTGTTGTGTAAACTTGATTCGTGGCTTTGTAAAGATTGACCGAATGGATAAAGCTGTACAAGTCCTGAAGATCATGGTGATGTCTGGTGGTGCTCCAGATATTATTACGTACAACATGATGATTGGTGGTTTATGCAAGCAAGGACATTTGGACTCTGCTATCGAGCTCTTGGACAATATGAGTTTTAGTGGCTGCCCCCCAGATGTGATTACATATAATGCAGTAATCCGCCGCATGTTTGACAATGGATATTTTGATCAGGCTGTTGAATTTTGGAAGGAACAGATCAGAAAAGGAACTCCTCCTTATTTAATTACTTACACAATCCTCATTGAGCTAATCTGTAAGCACTGTGGAACAGCTCGTGCTATTGAAGTATTGGAAGAAATGGCTAATGAGGGTTGTTATCCTGATCTTGTCACATATAATTCCTTGATCAACTTAACCTGCAAACAGGGAAAATTTGAAGATGCAGCTTTAGTTATAGATAATCTTCTTTTCCATGGAATGGTACCCAATGCTGTTACTTACAACACCCTTCTCCATTCACTTTCAAGGCGTGGGCGTTGGGATGAAGTTGATGAAATCTTAACAATCATGAGTATTAGTTTGCAGCCTCCAACAGTTGTCACTTACAACGTCTTGATTAATGGTCTATGTAAAAACGGACTTTTAGATCGTGCCATCAACTTTCTCAATCAAATGTTTTCCTACAATTGTTTGCCTGACATTATAACTTACAACACTCTACTTGGTGCTCTTAGTAAGGAAGGTATGGTAGATGAGGCTTTTCAATTACTTCACCTTTTAACCGGCACGACTTGCTCTCCTGGTTTAATTTCTTACAATACTGTGCTTGATGGGTTATCGAAAAAGGGGTATATGGATAAAGCAATGAGTTTATACGGTCAAATGACGGAAAATGGGATCTTGCCAGATGATATCACCCATCGATCTATAATTTGGGGGCTTTGTCGAGTAAACAAATTTGTAGAAGCTGTGGAGATATTGAAGGGATGTCTTGAGGCAGGACACAAAGTGAATAGTAGTTCTTACAGATTTCTAGTTCATGAACTATGCATAAATAAGAAGGTGGATCTTGCAATACAAGTTCTGGAAATGATGTTATCGAGTCGATATAAACCTAATGAGACAATTTATTCTACTATAATTAACAGCATCGCATCTGCCGGTTTAAAAGAACAGGCTGATGAGTTACGTCAGAAGTTGATTGAATGGAAGGTTTTAGGTAAGCAAGCAGTTTAAAAGAGTTTTCCTTTTTTTCTTTTTGGGGAAAATTCATACCTCATCTACTGCCACTTGAAGATTTAGGCAATAGTTCGTCGCGGAAGTTGTACAGTTCTTGAAAGTTGAATCCTTGAATCTTACTTTTCTTCTATGCAAGATACCCTTTTCCTGTTTCTATAAAAAAGCTCGTTTCGAAGTTACTTGCATTGGACTAACATTTCTATGATCAGAAATAATCTTTTGGCCCTTGCATCAACCTTAAATGCATCTGTAAGTAATTCTTGACCCTCTTCACTAAAAGAAATGCAGACCTGTTAGACTTTTGATAACTGTGTTAACCATTAGCTTACTTTAATCAGATCCCGATAGGTTACAACTGTGTCCAGGAATTCTAAAATAATACCATTTTCATCAAGAAAGAACAATGGCGGAGTTTTTTTTTTTTCCTTATGTCATTTATTGCCCTGGAAAATGTTCTCACTGGTTGGTTGAACATGTTGTAATATATGTTTATCAGATAAATAAGTAGTACTGTTACTAAT

mRNA sequence

CTTACAAAGGGTTAAATGTAAAAACGGATCTAAAGCCCTAGTTATGGCCCCTCGTCAAACTTTATCAGCAGCTGGAATTAAGAAGCAAGCTTCTCTTACTCGCTATCTCCGCTCCATTCTTCGAAACCACTCGAAGGAAGTAACAAATTCACTTTTGGGTCAGAGTAAGTGAGCTATTTCGATTAAGTTTCAGTTAATCATTAGTTAGTTTCAGTTGAAATGAAGCAGCTGATTACTGGGTATTGATTATCTCCTTCCCTTAAGAGCTTTGAAGCACTGCCCTTTACTTTGAGTTTGTTATGGCGTATACATTGACCGTTCAGAATTATATGGTAACAGTTAATGGTCTGCATGAATGTTCCAAACAAGAGTATGCTAATACTGGTATTGGCCAATGCTCGTTGGAAAAAGAAAAACCATCTTCTTTACACTTAAATTGTTTTTGTAAGTCTAGTTGCAGTAGTTCATATAGCTGTCATATGAGTACAACTCTTGGTTTAGGAAGAAAACAACACGTTTTACATTGTAAAGGATTGCAGAGGAGTGTATGCATTGATAGAGTTGATGATGCATATGAAGATGAATTGGCATTGAATGGTCACGAGACAACGGTTGAGAGAAATTTTGTTGAGAAAATGACTAAAAAGAAGCTCAGTTCTCATAATGGTTCAGCATTGTATTTGGATGGGCCTTTTGTTGGAAATGATGAAGAAACCAACAATGAGATTCTACAAAAATTCTGCAACAAGGGGAAGTTGATGGAAGCATCTAGGTTAGTTGATATTATGGCTCGTCGGAACCAGATTCCAGAGTTCCATTGTTGTGTAAACTTGATTCGTGGCTTTGTAAAGATTGACCGAATGGATAAAGCTGTACAAGTCCTGAAGATCATGGTGATGTCTGGTGGTGCTCCAGATATTATTACGTACAACATGATGATTGGTGGTTTATGCAAGCAAGGACATTTGGACTCTGCTATCGAGCTCTTGGACAATATGAGTTTTAGTGGCTGCCCCCCAGATGTGATTACATATAATGCAGTAATCCGCCGCATGTTTGACAATGGATATTTTGATCAGGCTGTTGAATTTTGGAAGGAACAGATCAGAAAAGGAACTCCTCCTTATTTAATTACTTACACAATCCTCATTGAGCTAATCTGTAAGCACTGTGGAACAGCTCGTGCTATTGAAGTATTGGAAGAAATGGCTAATGAGGGTTGTTATCCTGATCTTGTCACATATAATTCCTTGATCAACTTAACCTGCAAACAGGGAAAATTTGAAGATGCAGCTTTAGTTATAGATAATCTTCTTTTCCATGGAATGGTACCCAATGCTGTTACTTACAACACCCTTCTCCATTCACTTTCAAGGCGTGGGCGTTGGGATGAAGTTGATGAAATCTTAACAATCATGAGTATTAGTTTGCAGCCTCCAACAGTTGTCACTTACAACGTCTTGATTAATGGTCTATGTAAAAACGGACTTTTAGATCGTGCCATCAACTTTCTCAATCAAATGTTTTCCTACAATTGTTTGCCTGACATTATAACTTACAACACTCTACTTGGTGCTCTTAGTAAGGAAGGTATGGTAGATGAGGCTTTTCAATTACTTCACCTTTTAACCGGCACGACTTGCTCTCCTGGTTTAATTTCTTACAATACTGTGCTTGATGGGTTATCGAAAAAGGGGTATATGGATAAAGCAATGAGTTTATACGGTCAAATGACGGAAAATGGGATCTTGCCAGATGATATCACCCATCGATCTATAATTTGGGGGCTTTGTCGAGTAAACAAATTTGTAGAAGCTGTGGAGATATTGAAGGGATGTCTTGAGGCAGGACACAAAGTGAATAGTAGTTCTTACAGATTTCTAGTTCATGAACTATGCATAAATAAGAAGGTGGATCTTGCAATACAAGTTCTGGAAATGATGTTATCGAGTCGATATAAACCTAATGAGACAATTTATTCTACTATAATTAACAGCATCGCATCTGCCGGTTTAAAAGAACAGGCTGATGAGTTACGTCAGAAGTTGATTGAATGGAAGGTTTTAGGTAAGCAAGCAGTTTAAAAGAGTTTTCCTTTTTTTCTTTTTGGGGAAAATTCATACCTCATCTACTGCCACTTGAAGATTTAGGCAATAGTTCGTCGCGGAAGTTGTACAGTTCTTGAAAGTTGAATCCTTGAATCTTACTTTTCTTCTATGCAAGATACCCTTTTCCTGTTTCTATAAAAAAGCTCGTTTCGAAGTTACTTGCATTGGACTAACATTTCTATGATCAGAAATAATCTTTTGGCCCTTGCATCAACCTTAAATGCATCTGTAAGTAATTCTTGACCCTCTTCACTAAAAGAAATGCAGACCTGTTAGACTTTTGATAACTGTGTTAACCATTAGCTTACTTTAATCAGATCCCGATAGGTTACAACTGTGTCCAGGAATTCTAAAATAATACCATTTTCATCAAGAAAGAACAATGGCGGAGTTTTTTTTTTTTCCTTATGTCATTTATTGCCCTGGAAAATGTTCTCACTGGTTGGTTGAACATGTTGTAATATATGTTTATCAGATAAATAAGTAGTACTGTTACTAAT

Coding sequence (CDS)

ATGGCGTATACATTGACCGTTCAGAATTATATGGTAACAGTTAATGGTCTGCATGAATGTTCCAAACAAGAGTATGCTAATACTGGTATTGGCCAATGCTCGTTGGAAAAAGAAAAACCATCTTCTTTACACTTAAATTGTTTTTGTAAGTCTAGTTGCAGTAGTTCATATAGCTGTCATATGAGTACAACTCTTGGTTTAGGAAGAAAACAACACGTTTTACATTGTAAAGGATTGCAGAGGAGTGTATGCATTGATAGAGTTGATGATGCATATGAAGATGAATTGGCATTGAATGGTCACGAGACAACGGTTGAGAGAAATTTTGTTGAGAAAATGACTAAAAAGAAGCTCAGTTCTCATAATGGTTCAGCATTGTATTTGGATGGGCCTTTTGTTGGAAATGATGAAGAAACCAACAATGAGATTCTACAAAAATTCTGCAACAAGGGGAAGTTGATGGAAGCATCTAGGTTAGTTGATATTATGGCTCGTCGGAACCAGATTCCAGAGTTCCATTGTTGTGTAAACTTGATTCGTGGCTTTGTAAAGATTGACCGAATGGATAAAGCTGTACAAGTCCTGAAGATCATGGTGATGTCTGGTGGTGCTCCAGATATTATTACGTACAACATGATGATTGGTGGTTTATGCAAGCAAGGACATTTGGACTCTGCTATCGAGCTCTTGGACAATATGAGTTTTAGTGGCTGCCCCCCAGATGTGATTACATATAATGCAGTAATCCGCCGCATGTTTGACAATGGATATTTTGATCAGGCTGTTGAATTTTGGAAGGAACAGATCAGAAAAGGAACTCCTCCTTATTTAATTACTTACACAATCCTCATTGAGCTAATCTGTAAGCACTGTGGAACAGCTCGTGCTATTGAAGTATTGGAAGAAATGGCTAATGAGGGTTGTTATCCTGATCTTGTCACATATAATTCCTTGATCAACTTAACCTGCAAACAGGGAAAATTTGAAGATGCAGCTTTAGTTATAGATAATCTTCTTTTCCATGGAATGGTACCCAATGCTGTTACTTACAACACCCTTCTCCATTCACTTTCAAGGCGTGGGCGTTGGGATGAAGTTGATGAAATCTTAACAATCATGAGTATTAGTTTGCAGCCTCCAACAGTTGTCACTTACAACGTCTTGATTAATGGTCTATGTAAAAACGGACTTTTAGATCGTGCCATCAACTTTCTCAATCAAATGTTTTCCTACAATTGTTTGCCTGACATTATAACTTACAACACTCTACTTGGTGCTCTTAGTAAGGAAGGTATGGTAGATGAGGCTTTTCAATTACTTCACCTTTTAACCGGCACGACTTGCTCTCCTGGTTTAATTTCTTACAATACTGTGCTTGATGGGTTATCGAAAAAGGGGTATATGGATAAAGCAATGAGTTTATACGGTCAAATGACGGAAAATGGGATCTTGCCAGATGATATCACCCATCGATCTATAATTTGGGGGCTTTGTCGAGTAAACAAATTTGTAGAAGCTGTGGAGATATTGAAGGGATGTCTTGAGGCAGGACACAAAGTGAATAGTAGTTCTTACAGATTTCTAGTTCATGAACTATGCATAAATAAGAAGGTGGATCTTGCAATACAAGTTCTGGAAATGATGTTATCGAGTCGATATAAACCTAATGAGACAATTTATTCTACTATAATTAACAGCATCGCATCTGCCGGTTTAAAAGAACAGGCTGATGAGTTACGTCAGAAGTTGATTGAATGGAAGGTTTTAGGTAAGCAAGCAGTTTAA

Protein sequence

MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCHMSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSSHNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIRGFVKIDRMDKAVQVLKIMVMSGGAPDIITYNMMIGGLCKQGHLDSAIELLDNMSFSGCPPDVITYNAVIRRMFDNGYFDQAVEFWKEQIRKGTPPYLITYTILIELICKHCGTARAIEVLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPNAVTYNTLLHSLSRRGRWDEVDEILTIMSISLQPPTVVTYNVLINGLCKNGLLDRAINFLNQMFSYNCLPDIITYNTLLGALSKEGMVDEAFQLLHLLTGTTCSPGLISYNTVLDGLSKKGYMDKAMSLYGQMTENGILPDDITHRSIIWGLCRVNKFVEAVEILKGCLEAGHKVNSSSYRFLVHELCINKKVDLAIQVLEMMLSSRYKPNETIYSTIINSIASAGLKEQADELRQKLIEWKVLGKQAV

Homology

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BLAST of Bhi02G001055 vs. Swiss-Prot
Match: sp|Q9FRS4|PPR22_ARATH (Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana OX=3702 GN=At1g08610 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-17
Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 52  SCSSSYSCHMSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHET-TVERNFV 111
           SC    S      +GL +K     C GL  SVCID V+D  E     + +   T  R  V
Sbjct: 27  SCRKFSSLDWKQEIGL-KKDVFFRCHGLLSSVCIDNVNDHAERSSEFHHYGVGTNLRARV 86

Query: 112 EKMTKKKLSSHNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIP 171
           + M +  LSS        DGP   NDEETNNEIL   C+ GKL +A +LV++MAR NQ+P
Sbjct: 87  KPMKQFGLSS--------DGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVP 146

Query: 172 EFHCCVNLIRG 182
            F  C NL+RG
Sbjct: 147 HFPSCSNLVRG 148

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BLAST of Bhi02G001055 vs. TAIR10
Match: AT1G08610.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-18
Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 52  SCSSSYSCHMSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHET-TVERNFV 111
           SC    S      +GL +K     C GL  SVCID V+D  E     + +   T  R  V
Sbjct: 27  SCRKFSSLDWKQEIGL-KKDVFFRCHGLLSSVCIDNVNDHAERSSEFHHYGVGTNLRARV 86

Query: 112 EKMTKKKLSSHNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIP 171
           + M +  LSS        DGP   NDEETNNEIL   C+ GKL +A +LV++MAR NQ+P
Sbjct: 87  KPMKQFGLSS--------DGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVP 146

Query: 172 EFHCCVNLIRG 182
            F  C NL+RG
Sbjct: 147 HFPSCSNLVRG 148

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BLAST of Bhi02G001055 vs. TrEMBL
Match: tr|A0A1S3B8B2|A0A1S3B8B2_CUCME (pentatricopeptide repeat-containing protein At1g08610 OS=Cucumis melo OX=3656 GN=LOC103487276 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 6.0e-87
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAYTLTVQNYMVTVNG HECSKQEYA+TGIGQC LEKEK SSLHLNC CKSSC SSYSCH
Sbjct: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            STTLG GRKQ VLH KGLQRSVCIDRVD+ YEDEL LNGHE  VERNF EKMTKK++SS
Sbjct: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HNGS+LYLDGPFVGNDE+TNNEILQKFCNKGKLMEASRLVDIMA RNQIP+FHCCVNLIR
Sbjct: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

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BLAST of Bhi02G001055 vs. TrEMBL
Match: tr|A0A0A0LY76|A0A0A0LY76_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G665940 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 150/181 (82.87%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAY LTVQNYMVTVNGLHECSKQEYA+TGIGQC LEKEKPSSLHL   CK+S + SYSCH
Sbjct: 1   MAYILTVQNYMVTVNGLHECSKQEYASTGIGQCLLEKEKPSSLHLYGLCKTSFNGSYSCH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            STTLGLGRKQ VLH KGLQRSVCIDRVDD YEDELALNGHE  VERNF EK+TKK+  S
Sbjct: 61  WSTTLGLGRKQRVLHFKGLQRSVCIDRVDDTYEDELALNGHEIKVERNFSEKLTKKRFGS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HN S+LYLDGPFVGNDEETNN ILQKFC KGKLMEASR+VDIMA RNQIP+F CC+N+IR
Sbjct: 121 HNCSSLYLDGPFVGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

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BLAST of Bhi02G001055 vs. TrEMBL
Match: tr|A0A2I4FP41|A0A2I4FP41_9ROSI (pentatricopeptide repeat-containing protein At1g08610 OS=Juglans regia OX=51240 GN=LOC109000820 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-34
Identity = 86/183 (46.99%), Postives = 115/183 (62.84%), Query Frame = 0


Query: 1   MAYTLTVQNYMV---TVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSY 60
           M Y ++ QN+MV   +++GL+ CSK E  ++G   C +   KP  L LNC  K    +  
Sbjct: 1   MGYCISQQNHMVVFSSLHGLNGCSKLEGHHSGTCHCVI--IKPPGLRLNCISKCDHQTQS 60

Query: 61  SCHMSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKK 120
             H     G  R  H   C+GLQRS CI+R ++  +DE +   +   V+RNF + +  KK
Sbjct: 61  CLHWRGVHGARRNVHFSQCRGLQRSFCIERDNEIDQDEWSSEDYRMIVDRNFRQHINSKK 120

Query: 121 LSSHNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVN 180
            SS   S+LYLDGPFV N+EETNN ILQ FC++G+L++ASRL+DIMARRNQIP F  C N
Sbjct: 121 PSS---SSLYLDGPFVENNEETNNGILQNFCSQGRLLDASRLIDIMARRNQIPHFPSCTN 178

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BLAST of Bhi02G001055 vs. TrEMBL
Match: tr|A0A2N9GYK9|A0A2N9GYK9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32714 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-33
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTV---NGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSY 60
           M YT+  Q+Y+  V   +GLH CSKQE  ++    CS+ K +  +  LNC  K +  S +
Sbjct: 1   MGYTIIQQSYLAQVRSLHGLHGCSKQEGHSSVSCHCSVIKSR--AFRLNCLSKGNHKSQF 60

Query: 61  SCHMSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHET-TVERNFVEKMTKK 120
                   G GR   +L C+ LQRSVCI R ++  +DE +   + T  VERNF + M K 
Sbjct: 61  CLQWKGGFGSGRNACLLQCRVLQRSVCIGRDNEIEQDEWSSKNYGTGVVERNFRQLMKK- 120

Query: 121 KLSSHNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCV 179
              + N S LYLDGP VGNDEETNN+ILQ FC++G+L++ASRLVDIMARRNQIP F  C 
Sbjct: 121 ---TSNSSLLYLDGPLVGNDEETNNDILQSFCSQGRLVDASRLVDIMARRNQIPHFPSCT 176

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BLAST of Bhi02G001055 vs. TrEMBL
Match: tr|A0A251KBN7|A0A251KBN7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G053700 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.1e-31
Identity = 87/184 (47.28%), Postives = 114/184 (61.96%), Query Frame = 0


Query: 2   AYTLTVQNYMVTV---NGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYS 61
           +YT + QN ++ +   +GLH C K+   +  + + S+   K S   + CF     + SY 
Sbjct: 3   SYTSSPQNSIIELRCFHGLHSCFKKFGPSCSMVKASVFNLKNS---MKCF---HGNESYL 62

Query: 62  CHMSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKL 121
             +   L  G+    L CKGLQRSVCIDRVD+  +DE     H + V R   E+++ K  
Sbjct: 63  LRIG-DLHSGKTLFSLQCKGLQRSVCIDRVDENDQDEWNSETHLSGVGRKSREQISTK-- 122

Query: 122 SSHNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNL 181
            +H   AL +DGPFV NDEETNNEILQ  CNKG+LM+ASRL+D+MARRNQIP F CC NL
Sbjct: 123 -NHGSPALSIDGPFVENDEETNNEILQHLCNKGRLMDASRLIDVMARRNQIPHFICCTNL 176

Query: 182 IRGF 183
           IRGF
Sbjct: 183 IRGF 176

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BLAST of Bhi02G001055 vs. NCBI nr
Match: XP_008443760.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 9.1e-87
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAYTLTVQNYMVTVNG HECSKQEYA+TGIGQC LEKEK SSLHLNC CKSSC SSYSCH
Sbjct: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            STTLG GRKQ VLH KGLQRSVCIDRVD+ YEDEL LNGHE  VERNF EKMTKK++SS
Sbjct: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HNGS+LYLDGPFVGNDE+TNNEILQKFCNKGKLMEASRLVDIMA RNQIP+FHCCVNLIR
Sbjct: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

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BLAST of Bhi02G001055 vs. NCBI nr
Match: XP_004142592.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis sativus] >KGN66733.1 hypothetical protein Csa_1G665940 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 4.8e-80
Identity = 150/181 (82.87%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAY LTVQNYMVTVNGLHECSKQEYA+TGIGQC LEKEKPSSLHL   CK+S + SYSCH
Sbjct: 1   MAYILTVQNYMVTVNGLHECSKQEYASTGIGQCLLEKEKPSSLHLYGLCKTSFNGSYSCH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            STTLGLGRKQ VLH KGLQRSVCIDRVDD YEDELALNGHE  VERNF EK+TKK+  S
Sbjct: 61  WSTTLGLGRKQRVLHFKGLQRSVCIDRVDDTYEDELALNGHEIKVERNFSEKLTKKRFGS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HN S+LYLDGPFVGNDEETNN ILQKFC KGKLMEASR+VDIMA RNQIP+F CC+N+IR
Sbjct: 121 HNCSSLYLDGPFVGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of Bhi02G001055 vs. NCBI nr
Match: XP_022158526.1 (pentatricopeptide repeat-containing protein At1g08610 [Momordica charantia] >XP_022158527.1 pentatricopeptide repeat-containing protein At1g08610 [Momordica charantia])

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-79
Identity = 148/180 (82.22%), Postives = 159/180 (88.33%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAYTLT QNY VT +GLHECSKQEY +T I QC +  EKPS+LHLNC CKSSCSSSYSCH
Sbjct: 1   MAYTLTFQNYTVTAHGLHECSKQEYVSTCIAQCPM--EKPSALHLNCLCKSSCSSSYSCH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            S  LGL RK  VLHC+G+QRSVCIDRVDDAY+DELALNGHE  VERN  E+MTKK+LSS
Sbjct: 61  WSANLGLFRKLRVLHCRGVQRSVCIDRVDDAYQDELALNGHEVKVERNLFEQMTKKRLSS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HNGS+LYLDGPFVGND ETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCC+NLIR
Sbjct: 121 HNGSSLYLDGPFVGNDGETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCINLIR 178

[Close]

BLAST of Bhi02G001055 vs. NCBI nr
Match: XP_023516968.1 (pentatricopeptide repeat-containing protein At1g08610 [Cucurbita pepo subsp. pepo] >XP_023516969.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 5.3e-79
Identity = 144/181 (79.56%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAYTLTVQNYMVT+NG+HEC KQEY +TG GQC +EKEKP S+HL+C CKSSCSSSYS H
Sbjct: 1   MAYTLTVQNYMVTLNGIHECFKQEYVSTGSGQCLMEKEKPFSVHLSCLCKSSCSSSYSYH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            S T GLGRKQ VL CKG+Q SVCIDRVDDAY+DEL LNGHET V RNFVEK+TKK+LSS
Sbjct: 61  WSATPGLGRKQRVLRCKGVQSSVCIDRVDDAYKDELTLNGHETEVGRNFVEKVTKKRLSS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HNGS++Y+DGPF+GNDEETNN ILQKFC  GKLME+SRLVDIMA RNQIP+FHCCV LIR
Sbjct: 121 HNGSSVYMDGPFIGNDEETNNMILQKFCTMGKLMESSRLVDIMACRNQIPDFHCCVKLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of Bhi02G001055 vs. NCBI nr
Match: XP_022960808.1 (pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata] >XP_022960809.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata] >XP_022960810.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 7.0e-79
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGLHECSKQEYANTGIGQCSLEKEKPSSLHLNCFCKSSCSSSYSCH 60
           MAYTLTVQNYMVT+NGLHEC KQEY +TG GQC +EKEKP S+HL+C CKSSCSSSYS H
Sbjct: 1   MAYTLTVQNYMVTLNGLHECYKQEYVSTGSGQCLMEKEKPFSVHLSCLCKSSCSSSYSYH 60

Query: 61  MSTTLGLGRKQHVLHCKGLQRSVCIDRVDDAYEDELALNGHETTVERNFVEKMTKKKLSS 120
            STT G GRKQ VL CKG Q SVCIDRVDDAY+DEL LNGHE  V RNFVEKMTKK+LSS
Sbjct: 61  WSTTPGFGRKQRVLRCKGAQSSVCIDRVDDAYKDELTLNGHEIEVGRNFVEKMTKKRLSS 120

Query: 121 HNGSALYLDGPFVGNDEETNNEILQKFCNKGKLMEASRLVDIMARRNQIPEFHCCVNLIR 180
           HNGS++Y+DGPF+GNDEETNN ILQKFC  GKLME+SRLVDIMA RNQIP+FHCCV LIR
Sbjct: 121 HNGSSVYMDGPFIGNDEETNNMILQKFCTMGKLMESSRLVDIMACRNQIPDFHCCVKLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

The following BLAST results are available for this feature:

BLAST of Bhi02G001055 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FRS4\|PPR22_ARATH	8.8e-17	42.75	Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana OX...	[more]

BLAST of Bhi02G001055 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08610.1	4.9e-18	42.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Bhi02G001055 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8B2\|A0A1S3B8B2_CUCME	6.0e-87	87.85	pentatricopeptide repeat-containing protein At1g08610 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LY76\|A0A0A0LY76_CUCSA	3.2e-80	82.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G665940 PE=4 SV=1	[more]
tr\|A0A2I4FP41\|A0A2I4FP41_9ROSI	3.5e-34	46.99	pentatricopeptide repeat-containing protein At1g08610 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2N9GYK9\|A0A2N9GYK9_FAGSY	1.0e-33	48.35	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32714 PE=4 SV=1	[more]
tr\|A0A251KBN7\|A0A251KBN7_MANES	6.1e-31	47.28	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G053700 PE=4 SV=...	[more]

BLAST of Bhi02G001055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443760.1	9.1e-87	87.85	PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis melo]	[more]
XP_004142592.1	4.8e-80	82.87	PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis sativu...	[more]
XP_022158526.1	1.1e-79	82.22	pentatricopeptide repeat-containing protein At1g08610 [Momordica charantia] >XP_...	[more]
XP_023516968.1	5.3e-79	79.56	pentatricopeptide repeat-containing protein At1g08610 [Cucurbita pepo subsp. pep...	[more]
XP_022960808.1	7.0e-79	80.11	pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata] >XP_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001055	Bhi02M001055	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 524..557 e-value: 0.0025 score: 15.8 coord: 175..206 e-value: 0.0016 score: 16.4 coord: 348..371 e-value: 8.2E-5 score: 20.5 coord: 418..449 e-value: 6.4E-6 score: 24.0 coord: 243..275 e-value: 4.1E-4 score: 18.3 coord: 208..242 e-value: 1.3E-10 score: 38.8 coord: 453..486 e-value: 1.1E-9 score: 35.8 coord: 278..311 e-value: 1.0E-4 score: 20.2 coord: 313..347 e-value: 4.4E-6 score: 24.5 coord: 383..417 e-value: 2.0E-9 score: 35.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 509..567 e-value: 0.001 score: 19.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 380..429 e-value: 2.2E-15 score: 56.5 coord: 450..499 e-value: 5.2E-13 score: 48.9 coord: 205..250 e-value: 4.2E-16 score: 58.8 coord: 310..358 e-value: 8.7E-12 score: 44.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 177..202 e-value: 0.031 score: 14.4 coord: 278..308 e-value: 0.049 score: 13.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 311..345 score: 11.268
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 206..240 score: 13.537
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 451..485 score: 12.025
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 486..520 score: 8.166
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 556..590 score: 7.103
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 276..310 score: 9.383
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 346..380 score: 10.205
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 381..415 score: 12.43
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 171..205 score: 8.177
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 8.934
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 521..555 score: 9.668
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 416..450 score: 11.137
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 241..275 score: 11.06
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 252..376 e-value: 6.3E-30 score: 106.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 128..251 e-value: 9.1E-26 score: 92.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 377..442 e-value: 4.3E-20 score: 74.0 coord: 443..513 e-value: 2.9E-15 score: 58.2 coord: 514..589 e-value: 3.2E-10 score: 41.8
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 24..590
None	No IPR available	PANTHER	PTHR24015:SF533	SUBFAMILY NOT NAMED	coord: 24..590
None	No IPR available	PRODOM	PD104036		coord: 214..254 e-value: 0.003 score: 101.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G001055	Cucumber (Gy14) v1	cgywgoB791
Bhi02G001055	Cucumber (Gy14) v2	cgybwgoB100
Bhi02G001055	Cucumber (Gy14) v2	cgybwgoB113
Bhi02G001055	Cucurbita maxima (Rimu)	cmawgoB0082
Bhi02G001055	Cucurbita maxima (Rimu)	cmawgoB0169
Bhi02G001055	Cucurbita moschata (Rifu)	cmowgoB0076
Bhi02G001055	Cucurbita moschata (Rifu)	cmowgoB0162
Bhi02G001055	Cucurbita pepo (Zucchini)	cpewgoB0475
Bhi02G001055	Cucurbita pepo (Zucchini)	cpewgoB0899
Bhi02G001055	Wild cucumber (PI 183967)	cpiwgoB113
Bhi02G001055	Cucumber (Chinese Long) v3	cucwgoB118
Bhi02G001055	Cucumber (Chinese Long) v2	cuwgoB111
Bhi02G001055	Bottle gourd (USVL1VR-Ls)	lsiwgoB521
Bhi02G001055	Bottle gourd (USVL1VR-Ls)	lsiwgoB531
Bhi02G001055	Melon (DHL92) v3.6.1	medwgoB310
Bhi02G001055	Melon (DHL92) v3.5.1	mewgoB316
Bhi02G001055	Watermelon (Charleston Gray)	wcgwgoB371
Bhi02G001055	Watermelon (97103) v2	wgowmbB636
Bhi02G001055	Silver-seed gourd	carwgoB0363
Bhi02G001055	Silver-seed gourd	carwgoB1057