Bhi02G001048 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G001048
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	fidgetin-like protein 1
Location	chr2 : 29987591 .. 29989349 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTGCATTATCTCTCCTGGAGAAGGATGGATTATTCAAGCTTTCAGAAGACAAAATTGATACGATTTGCACTTTGACTGAAGGTAGTAGCTTCATTACAAAGTTTAGAATTAAGGCTGCATTTATACCAGTTGAAAAGTAATCCATCAGTGGTAACAAAAAGTGGGCCCCAGTTGGCTCTCCATAATCATAATGAGATGTGGGGTCCACTTTGAAATTTGTAATTAAATCGTGTAATCTGATTAAGGAATAAAAGGTGTTCAATTTGATTATGGTTGAAAATTACATGAGATCCACTACCTCTATCATTACTGCTACAGATATTGTTATTGTAACAGTATGAAAATTATGAATTTGCCACATTTATTGTTATCTTTACCGTTATCGTTACCATTACCGTTAGGGTCAAACAATACTGGAAACAGTAACAGTAGAATGGACAGATTCATAATTCTAAGTAAATACAATAAAAAACAATCCAATTGTGTTTGTGATTTAGGTCTATTACAATTCATTCATCAATGAAATCTCATTCCAGTTACACCAATTTGTTTGGTAAATGTGGTCTAAATTTTAATTCTTTTTCTTTTTCTTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTGAAAATTTTAGAATTAAATTCTTGCCCTCACTATGTAAGATGGAATGCATAATACTGGTCTTTGACTCTCTTATGGAATCTTGCTGGAAATTTGAATTGATGTATTCAGGTTCAGACATGGAAAACCTGAAAGACGCCCAAACTGGCTCTTTAAGAGGTAGGCTCTAAAATGAGGCACAAAAATTACATTCCTTAAAAAGGAGGATATGCGGTCCGTAACCCAGGGTAATAATCCTTTGTTTCTTTCTGGCTTATTTTTGTAGAATTTTGAGAGTGCAATGCAAGAGGTCAGGACCTGTGCATCTTTGATCGAACTTGGCACATAATAATGAATGAAACAAGCAATTTGGGAGCTTATCCCTTTGAATCACAGAAGGTGAGCTGATTGGCTGAGGATTTAAACCAATTGTCATTGTTTTCAAAAAGATTTTTGGTTGTCCTCTTTCAAGAGCTGCATTTTCACTAAATCCATGATAATGTACTGGTCATTCATTCAAAAACTTCAAATATTGTTCGTCATTTTTCGGTTTATTTTCTTGTTTTTCCTTCTTAAGAGCAATTTGTATCTTTGAGTATTAATCTTGTTCCATTTTGAAACCTGAAAGAATGCCTTGCAGCTCATGTGCTTCATTCGGAAATTTATTTCATACATGTGGAATTTGAACCATAAGTAATTGATCAATGAGTGAGTTTAAGTGCTTTAGGTGTACTTCTTCCACAGGTTCTTTAAGTCTTGTGGCATCTTCACTTGTACATGTCTCTCTCTCTACATATCCGGTGTAATCTCCTGTCACATCCGCCATTCGGTTTTCCTATGAGCGTCATTGTAGAAGATTTTTGGAGGATATTTAACTTTTTCTTTACAACTATGCTTGAGATGATTTGTTCTATAGTTTATATATTTATGGCCTTGAGATCTAAGGATATTTAACTTTTATTTTTCCTTAATGTTGAGCTGACATATTAGACTTTATTAGCAAAGCCTCTACTTTTATCTACAAAAAGATTGAAACTGCCTTGCGGCTAAGCCCTTGTGCTACCAACTAATAAGGTGTTATCTTTTGTAGGCTGTTCCAGTCTTTCTACGGATTCGAGTTCAAGTTTTACAATGACGAAGTTATCTTGA

mRNA sequence

ATGGATTGTGCATTATCTCTCCTGGAGAAGGATGGATTATTCAAGCTTTCAGAAGACAAAATTGATACGATTTGCACTTTGACTGAAGGTTCAGACATGGAAAACCTGAAAGACGCCCAAACTGGCTCTTTAAGAGAAGGCTGTTCCAGTCTTTCTACGGATTCGAGTTCAAGTTTTACAATGACGAAGTTATCTTGA

Coding sequence (CDS)

ATGGATTGTGCATTATCTCTCCTGGAGAAGGATGGATTATTCAAGCTTTCAGAAGACAAAATTGATACGATTTGCACTTTGACTGAAGGTTCAGACATGGAAAACCTGAAAGACGCCCAAACTGGCTCTTTAAGAGAAGGCTGTTCCAGTCTTTCTACGGATTCGAGTTCAAGTTTTACAATGACGAAGTTATCTTGA

Protein sequence

MDCALSLLEKDGLFKLSEDKIDTICTLTEGSDMENLKDAQTGSLREGCSSLSTDSSSSFTMTKLS

Homology

[Close]

BLAST of Bhi02G001048 vs. Swiss-Prot
Match: sp|F4JEX5|FIGL1_ARATH (ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana OX=3702 GN=FIGL1 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-05
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LL+KDGLF LS+D ++ IC LTE   GSDM+NL KDA  G LRE
Sbjct: 581 NLLKKDGLFTLSDDDMNIICNLTEGYSGSDMKNLVKDATMGPLRE 625

[Close]

BLAST of Bhi02G001048 vs. TAIR10
Match: AT3G27120.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LL+KDGLF LS+D ++ IC LTE   GSDM+NL KDA  G LRE
Sbjct: 377 NLLKKDGLFTLSDDDMNIICNLTEGYSGSDMKNLVKDATMGPLRE 421

[Close]

BLAST of Bhi02G001048 vs. TrEMBL
Match: tr|A0A1S3B2R5|A0A1S3B2R5_CUCME (fidgetin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485485 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+D+IDTICTLTE   GSDM+NL KDA  G LRE
Sbjct: 589 NLLEKDGLFKLSKDEIDTICTLTEGYSGSDMKNLVKDASMGPLRE 633

[Close]

BLAST of Bhi02G001048 vs. TrEMBL
Match: tr|A0A0A0LQU8|A0A0A0LQU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406700 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLF LS+D+IDTICTLTE   GSDM+NL KDA  G LRE
Sbjct: 591 NLLEKDGLFNLSKDEIDTICTLTEGYSGSDMKNLVKDASMGPLRE 635

[Close]

BLAST of Bhi02G001048 vs. TrEMBL
Match: tr|A0A1R3IS07|A0A1R3IS07_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_10245 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLSED ID IC LTE   GSDM+NL KDA  G LRE
Sbjct: 558 NLLEKDGLFKLSEDDIDAICKLTEGYSGSDMKNLVKDASMGPLRE 602

[Close]

BLAST of Bhi02G001048 vs. TrEMBL
Match: tr|A0A1R3JDL1|A0A1R3JDL1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17200 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLSED ID IC LTE   GSDM+NL KDA  G LRE
Sbjct: 561 NLLEKDGLFKLSEDDIDAICKLTEGYSGSDMKNLVKDASMGPLRE 605

[Close]

BLAST of Bhi02G001048 vs. TrEMBL
Match: tr|A0A067LG63|A0A067LG63_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10128 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+++IDTIC LTE   GSDM+NL KDA  G LRE
Sbjct: 560 NLLEKDGLFKLSKEEIDTICNLTEGYSGSDMKNLVKDASMGPLRE 604

[Close]

BLAST of Bhi02G001048 vs. NCBI nr
Match: XP_008441344.1 (PREDICTED: fidgetin-like protein 1 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+D+IDTICTLTE   GSDM+NL KDA  G LRE
Sbjct: 589 NLLEKDGLFKLSKDEIDTICTLTEGYSGSDMKNLVKDASMGPLRE 633

[Close]

BLAST of Bhi02G001048 vs. NCBI nr
Match: XP_011003920.1 (PREDICTED: fidgetin-like protein 1 isoform X1 [Populus euphratica])

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-06
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+D+IDTIC+LTE   GSDM+NL KDA  G LRE
Sbjct: 579 NLLEKDGLFKLSKDEIDTICSLTEGDSGSDMKNLVKDASMGPLRE 623

[Close]

BLAST of Bhi02G001048 vs. NCBI nr
Match: XP_011003921.1 (PREDICTED: fidgetin-like protein 1 isoform X2 [Populus euphratica])

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-06
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+D+IDTIC+LTE   GSDM+NL KDA  G LRE
Sbjct: 578 NLLEKDGLFKLSKDEIDTICSLTEGDSGSDMKNLVKDASMGPLRE 622

[Close]

BLAST of Bhi02G001048 vs. NCBI nr
Match: XP_011016096.1 (PREDICTED: fidgetin-like protein 1 [Populus euphratica])

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-06
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+D+IDTIC+LTE   GSDM+NL KDA  G LRE
Sbjct: 384 NLLEKDGLFKLSKDEIDTICSLTEGDSGSDMKNLVKDASMGPLRE 428

[Close]

BLAST of Bhi02G001048 vs. NCBI nr
Match: XP_022134538.1 (ATPase family AAA domain-containing protein FIGL1 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-06
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 6   SLLEKDGLFKLSEDKIDTICTLTE---GSDMENL-KDAQTGSLRE 47
           +LLEKDGLFKLS+++IDTICTLTE   GSDM+NL KDA  G LRE
Sbjct: 589 NLLEKDGLFKLSKEEIDTICTLTEGYSGSDMKNLVKDASMGPLRE 633

The following BLAST results are available for this feature:

BLAST of Bhi02G001048 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JEX5\|FIGL1_ARATH	4.2e-05	62.22	ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Bhi02G001048 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27120.1	2.3e-06	62.22	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

BLAST of Bhi02G001048 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B2R5\|A0A1S3B2R5_CUCME	2.2e-06	75.56	fidgetin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485485 PE=3 SV=1	[more]
tr\|A0A0A0LQU8\|A0A0A0LQU8_CUCSA	8.2e-06	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406700 PE=3 SV=1	[more]
tr\|A0A1R3IS07\|A0A1R3IS07_COCAP	2.4e-05	73.33	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_10245 PE=3 ...	[more]
tr\|A0A1R3JDL1\|A0A1R3JDL1_9ROSI	2.4e-05	73.33	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17200 PE=3 SV=1	[more]
tr\|A0A067LG63\|A0A067LG63_JATCU	2.4e-05	71.11	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10128 PE=3 SV=1	[more]

BLAST of Bhi02G001048 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441344.1	3.3e-06	75.56	PREDICTED: fidgetin-like protein 1 [Cucumis melo]	[more]
XP_011003920.1	9.5e-06	73.33	PREDICTED: fidgetin-like protein 1 isoform X1 [Populus euphratica]	[more]
XP_011003921.1	9.5e-06	73.33	PREDICTED: fidgetin-like protein 1 isoform X2 [Populus euphratica]	[more]
XP_011016096.1	9.5e-06	73.33	PREDICTED: fidgetin-like protein 1 [Populus euphratica]	[more]
XP_022134538.1	9.5e-06	73.33	ATPase family AAA domain-containing protein FIGL1 [Momordica charantia]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001048	Bhi02M001048	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..65

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G001048	Cucumber (Gy14) v1	cgywgoB791
Bhi02G001048	Cucumber (Gy14) v2	cgybwgoB100
Bhi02G001048	Cucumber (Gy14) v2	cgybwgoB113
Bhi02G001048	Cucurbita maxima (Rimu)	cmawgoB0082
Bhi02G001048	Cucurbita maxima (Rimu)	cmawgoB0169
Bhi02G001048	Cucurbita moschata (Rifu)	cmowgoB0076
Bhi02G001048	Cucurbita moschata (Rifu)	cmowgoB0162
Bhi02G001048	Cucurbita pepo (Zucchini)	cpewgoB0899
Bhi02G001048	Cucurbita pepo (Zucchini)	cpewgoB0971
Bhi02G001048	Wild cucumber (PI 183967)	cpiwgoB113
Bhi02G001048	Cucumber (Chinese Long) v3	cucwgoB118
Bhi02G001048	Cucumber (Chinese Long) v2	cuwgoB111
Bhi02G001048	Bottle gourd (USVL1VR-Ls)	lsiwgoB521
Bhi02G001048	Bottle gourd (USVL1VR-Ls)	lsiwgoB531
Bhi02G001048	Melon (DHL92) v3.6.1	medwgoB310
Bhi02G001048	Melon (DHL92) v3.5.1	mewgoB316
Bhi02G001048	Watermelon (Charleston Gray)	wcgwgoB371
Bhi02G001048	Silver-seed gourd	carwgoB1057