Bhi02G000644 (gene) Wax gourd

NameBhi02G000644
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr2 : 17400030 .. 17400413 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTTTGAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTGTATCCCACAGCCGAGTGGCCAGGAAAGATTTGGGCCTTGACTTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCAGGCTCAGGCTCAGGCTCAGGCTCTGGCTCGGGATCAGGATCAAGTTCGAGTTCGAGTTCGAGTTCTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGTTCCGGGTCGGGTGGTCATGGAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGAGGGGGTTATGGAGGAGGGCATAGAAAATGA

mRNA sequence

ATGGGTAGTTTGAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTGTATCCCACAGCCGAGTGGCCAGGAAAGATTTGGGCCTTGACTTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCAGGCTCAGGCTCAGGCTCAGGCTCTGGCTCGGGATCAGGATCAAGTTCGAGTTCGAGTTCGAGTTCTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGTTCCGGGTCGGGTGGTCATGGAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGAGGGGGTTATGGAGGAGGGCATAGAAAATGA

Coding sequence (CDS)

ATGGGTAGTTTGAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTGTATCCCACAGCCGAGTGGCCAGGAAAGATTTGGGCCTTGACTTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCAGGCTCAGGCTCAGGCTCAGGCTCTGGCTCGGGATCAGGATCAAGTTCGAGTTCGAGTTCGAGTTCTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGTTCCGGGTCGGGTGGTCATGGAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGAGGGGGTTATGGAGGAGGGCATAGAAAATGA

Protein sequence

MGSLKSLVLAALLVSSLFVVSHSRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGHGGGGSGYGGGYGGGYGGGHRK
BLAST of Bhi02G000644 vs. TrEMBL
Match: tr|A0A1S4DUX4|A0A1S4DUX4_CUCME (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-04
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MGSLKSLVLAALLVSSLFVVSHSRVARKDLGL 33
          MGSLKSLVLAALLVSS FVVS SRVARKDLGL
Sbjct: 1  MGSLKSLVLAALLVSSFFVVSQSRVARKDLGL 32

BLAST of Bhi02G000644 vs. NCBI nr
Match: XP_016899784.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 7.8e-04
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MGSLKSLVLAALLVSSLFVVSHSRVARKDLGL 33
          MGSLKSLVLAALLVSS FVVS SRVARKDLGL
Sbjct: 1  MGSLKSLVLAALLVSSFFVVSQSRVARKDLGL 32

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DUX4|A0A1S4DUX4_CUCME5.2e-0493.75glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
Match NameE-valueIdentityDescription
XP_016899784.17.8e-0493.75PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi02M000644Bhi02M000644mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..127
NoneNo IPR availablePANTHERPTHR38934:SF5GLYCINE-RICH PROTEINcoord: 1..125
NoneNo IPR availablePANTHERPTHR38934FAMILY NOT NAMEDcoord: 1..125