Bhi02G000642 (gene) Wax gourd

Overview
NameBhi02G000642
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr2 : 17364167 .. 17365007 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGCTTCAACTAATTTTACTATAAATACCTCTCTCAAATCTCCTCTATAATTCCCACATCAAAGCCTTAAACCCTAAACCCTAGAGAAGTTTTAATACCATCCCATAAATTGTTACTTTGTTTAAACAATATAATTATTATGGCTTCAATCAAGTCCCTTGCTGTTGTTGTTTGCTTTTTACTGTCCTTTTCCGCCATTCTCTCTGAAGGTCGGGTGGCGAGAAAGGATCTCGGCATTGACCTTGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCTGGCTCTGGATCTGGGTCGAGTTCATCTTCATCATCATATTCCTCGAGCTCAAGCTCGAGCTCTGGGTCTGGAGCTGGGTCCGAAGCTGGCTCATACGCAGGCTCGTATGCAGGGTCTCGAGCAGGCTCGGGTGGAAATAGGAATGGAGGATCGGGGTCTGGTACGGGATATGGCGGAGGTTCAGGCAGAGGAGGCGGCAATGGTGGCGGTGAAGGTTATGGTGAAGGTCATGGCTATGGTGAGGGTCATGGTTATGGAGGAGGCAACTGAAAAAAAAAGTTAATAAGAGGACGTATACAAAAGTATTAGGTTACGTAGTTGATTTAGATCATGATCTTAATTTTATGTATTTAAATAAGGATAAGAGATGATGGAGGGGTTTAGTAGTGTGCGTGTTGTAGCAGTCGTGAAATTGTTGTAGTTCATGTGTGATGAATTTTTATGTTGCTTCTTGCTTGGTGTTAGTTTCATGTGTTTTTTAATGTTTTACTATATACTAATGCATACTCATCCCCTAAATTAAACCCAT

mRNA sequence

AACAGCTTCAACTAATTTTACTATAAATACCTCTCTCAAATCTCCTCTATAATTCCCACATCAAAGCCTTAAACCCTAAACCCTAGAGAAGTTTTAATACCATCCCATAAATTGTTACTTTGTTTAAACAATATAATTATTATGGCTTCAATCAAGTCCCTTGCTGTTGTTGTTTGCTTTTTACTGTCCTTTTCCGCCATTCTCTCTGAAGGTCGGGTGGCGAGAAAGGATCTCGGCATTGACCTTGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCTGGCTCTGGATCTGGGTCGAGTTCATCTTCATCATCATATTCCTCGAGCTCAAGCTCGAGCTCTGGGTCTGGAGCTGGGTCCGAAGCTGGCTCATACGCAGGCTCGTATGCAGGGTCTCGAGCAGGCTCGGGTGGAAATAGGAATGGAGGATCGGGGTCTGGTACGGGATATGGCGGAGGTTCAGGCAGAGGAGGCGGCAATGGTGGCGGTGAAGGTTATGGTGAAGGTCATGGCTATGGTGAGGGTCATGGTTATGGAGGAGGCAACTGAAAAAAAAAGTTAATAAGAGGACGTATACAAAAGTATTAGGTTACGTAGTTGATTTAGATCATGATCTTAATTTTATGTATTTAAATAAGGATAAGAGATGATGGAGGGGTTTAGTAGTGTGCGTGTTGTAGCAGTCGTGAAATTGTTGTAGTTCATGTGTGATGAATTTTTATGTTGCTTCTTGCTTGGTGTTAGTTTCATGTGTTTTTTAATGTTTTACTATATACTAATGCATACTCATCCCCTAAATTAAACCCAT

Coding sequence (CDS)

ATGGCTTCAATCAAGTCCCTTGCTGTTGTTGTTTGCTTTTTACTGTCCTTTTCCGCCATTCTCTCTGAAGGTCGGGTGGCGAGAAAGGATCTCGGCATTGACCTTGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCTGGCTCTGGATCTGGGTCGAGTTCATCTTCATCATCATATTCCTCGAGCTCAAGCTCGAGCTCTGGGTCTGGAGCTGGGTCCGAAGCTGGCTCATACGCAGGCTCGTATGCAGGGTCTCGAGCAGGCTCGGGTGGAAATAGGAATGGAGGATCGGGGTCTGGTACGGGATATGGCGGAGGTTCAGGCAGAGGAGGCGGCAATGGTGGCGGTGAAGGTTATGGTGAAGGTCATGGCTATGGTGAGGGTCATGGTTATGGAGGAGGCAACTGA

Protein sequence

MASIKSLAVVVCFLLSFSAILSEGRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSYSSSSSSSSGSGAGSEAGSYAGSYAGSRAGSGGNRNGGSGSGTGYGGGSGRGGGNGGGEGYGEGHGYGEGHGYGGGN
Homology
[Close]
BLAST of Bhi02G000642 vs. TrEMBL
Match: tr|A0A0A0LTK9|A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.8e-07
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MASIKSLAVVVCFLLSFSAILSEGRVARKDLGIDL 36
          MASIKSLA+VVC LLSFSAILSEGRVARKDLGIDL
Sbjct: 1  MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDL 35

[Close]
BLAST of Bhi02G000642 vs. TrEMBL
Match: tr|A0A1S3B9N0|A0A1S3B9N0_CUCME (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MASIKSLAVVVCFLLSFSAILSEGRVARKDLGID 35
          MASIKSLA+VVC LLSFS  LSEGRVARKDLGID
Sbjct: 1  MASIKSLALVVCLLLSFSVFLSEGRVARKDLGID 34

[Close]
BLAST of Bhi02G000642 vs. NCBI nr
Match: XP_004146660.2 (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypothetical protein Csa_1G278500 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MASIKSLAVVVCFLLSFSAILSEGRVARKDLGIDL 36
          MASIKSLA+VVC LLSFSAILSEGRVARKDLGIDL
Sbjct: 1  MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDL 35

[Close]
BLAST of Bhi02G000642 vs. NCBI nr
Match: XP_008443813.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-05
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  MASIKSLAVVVCFLLSFSAILSEGRVARKDLGID 35
          MASIKSLA+VVC LLSFS  LSEGRVARKDLGID
Sbjct: 1  MASIKSLALVVCLLLSFSVFLSEGRVARKDLGID 34

The following BLAST results are available for this feature:
BLAST of Bhi02G000642 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi02G000642 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi02G000642 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTK9|A0A0A0LTK9_CUCSA9.8e-0794.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1[more]
tr|A0A1S3B9N0|A0A1S3B9N0_CUCME4.1e-0588.24glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
BLAST of Bhi02G000642 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146660.21.5e-0694.29PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN652... [more]
XP_008443813.16.2e-0588.24PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi02M000642Bhi02M000642mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..85
NoneNo IPR availablePANTHERPTHR38934FAMILY NOT NAMEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR38934:SF5GLYCINE-RICH PROTEINcoord: 1..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi02G000642Csa1G278500Cucumber (Chinese Long) v2cuwgoB101
Bhi02G000642ClCG06G012800Watermelon (Charleston Gray)wcgwgoB547
Bhi02G000642CSPI01G18130Wild cucumber (PI 183967)cpiwgoB099
Bhi02G000642Lsi06G010970Bottle gourd (USVL1VR-Ls)lsiwgoB523
Bhi02G000642CsGy1G018190Cucumber (Gy14) v2cgybwgoB093
Bhi02G000642CsaV3_1G029350Cucumber (Chinese Long) v3cucwgoB104
Bhi02G000642Cla018770Watermelon (97103) v1wgowmB684
Bhi02G000642Cla97C06G122060Watermelon (97103) v2wgowmbB655
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi02G000642Cucurbita pepo (Zucchini)cpewgoB0466
Bhi02G000642Wax gourdwgowgoB047
Bhi02G000642Silver-seed gourdcarwgoB0165
Bhi02G000642Cucumber (Gy14) v1cgywgoB119
Bhi02G000642Cucumber (Gy14) v2cgybwgoB207
Bhi02G000642Cucurbita maxima (Rimu)cmawgoB0076
Bhi02G000642Cucurbita maxima (Rimu)cmawgoB0150
Bhi02G000642Cucurbita moschata (Rifu)cmowgoB0070
Bhi02G000642Cucurbita moschata (Rifu)cmowgoB0145
Bhi02G000642Cucurbita pepo (Zucchini)cpewgoB0896
Bhi02G000642Wild cucumber (PI 183967)cpiwgoB216
Bhi02G000642Cucumber (Chinese Long) v3cucwgoB221
Bhi02G000642Cucumber (Chinese Long) v2cuwgoB216
Bhi02G000642Bottle gourd (USVL1VR-Ls)lsiwgoB145
Bhi02G000642Melon (DHL92) v3.6.1medwgoB290
Bhi02G000642Melon (DHL92) v3.6.1medwgoB494
Bhi02G000642Melon (DHL92) v3.5.1mewgoB290
Bhi02G000642Melon (DHL92) v3.5.1mewgoB493
Bhi02G000642Silver-seed gourdcarwgoB0620