Bhi02G000346 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G000346
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	transcription factor MYB98-like
Location	chr2 : 8630854 .. 8631377 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAACGATACAAGGAGTGAAGAAGAGGACAGAGTATTGATTGAAGCACATTCAGAAATAGGGAATAAATGGGCAGAAATTGCAAAGAGATTACCTGAAAGAACTGAAACTCTATTAAAAACCACTGGAATGCAACAAAGAGAAGGCAATATTCATAGCGAAAATGCAGATCCAAATATTCGAGATGCTTTCTTCTACAGGATAACATAAAGAGTCTGAATCTCGACTCCAATAACGTCACTCGCTACCAGAAGAAAAGCTCTGCCGTCACCTTCTCCGCCATCAACAATAATTCCAAATCAAAATTGGCCGATCATCATCATCATCAAGTACAAACTACTGATTTTTTCCCTAACCATTGGACGGTCACGAATTTTGATTTCAAGGAAGAACCAGAGTTTAATCTCGATGATAGTTTCTTCCCGAAAGGATGCCGCTTCAACTCGCTCATGGAGGATATTGTTGGCGCTTCTGTTGACGAAGCCAATAATGATGATCGGAAAAGATATAACGGGCAATGA

mRNA sequence

ATGCAGAACGATACAAGGAGTGAAGAAGAGGACAGAGATAACATAAAGAGTCTGAATCTCGACTCCAATAACGTCACTCGCTACCAGAAGAAAAGCTCTGCCGTCACCTTCTCCGCCATCAACAATAATTCCAAATCAAAATTGGCCGATCATCATCATCATCAAGTACAAACTACTGATTTTTTCCCTAACCATTGGACGGTCACGAATTTTGATTTCAAGGAAGAACCAGAGTTTAATCTCGATGATAGTTTCTTCCCGAAAGGATGCCGCTTCAACTCGCTCATGGAGGATATTGTTGGCGCTTCTGTTGACGAAGCCAATAATGATGATCGGAAAAGATATAACGGGCAATGA

Coding sequence (CDS)

ATGCAGAACGATACAAGGAGTGAAGAAGAGGACAGAGATAACATAAAGAGTCTGAATCTCGACTCCAATAACGTCACTCGCTACCAGAAGAAAAGCTCTGCCGTCACCTTCTCCGCCATCAACAATAATTCCAAATCAAAATTGGCCGATCATCATCATCATCAAGTACAAACTACTGATTTTTTCCCTAACCATTGGACGGTCACGAATTTTGATTTCAAGGAAGAACCAGAGTTTAATCTCGATGATAGTTTCTTCCCGAAAGGATGCCGCTTCAACTCGCTCATGGAGGATATTGTTGGCGCTTCTGTTGACGAAGCCAATAATGATGATCGGAAAAGATATAACGGGCAATGA

Protein sequence

MQNDTRSEEEDRDNIKSLNLDSNNVTRYQKKSSAVTFSAINNNSKSKLADHHHHQVQTTDFFPNHWTVTNFDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYNGQ

Homology

[Close]

BLAST of Bhi02G000346 vs. TrEMBL
Match: tr|A0A0A0LRG5|A0A0A0LRG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004900 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 12  RDNIKSLNLDSNNVTRY-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFFPNHWTVTN 71
           +D IKSLNLDSN   R+  XXXXXXXXXXXXXXXXXXXXXXXXXXX  TDF PN WTV +
Sbjct: 311 QDYIKSLNLDSNTAVRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTDFCPNDWTVPD 370

Query: 72  FDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           FDFKEEPEF LDDSFFP+GC  NSLMEDIVGASVDEANN DRKRYN
Sbjct: 371 FDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYN 416

[Close]

BLAST of Bhi02G000346 vs. TrEMBL
Match: tr|A0A1S3BWA8|A0A1S3BWA8_CUCME (transcription factor MYB98-like OS=Cucumis melo OX=3656 GN=LOC103494322 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 87/109 (79.82%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 12  RDNIKSLNLDSNNVT----RYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFFPNHWT 71
           +D IKSLNLDSNN         XXXXXXXXXXXXXXXXXXXXXXXXXXX  TDF PN WT
Sbjct: 312 QDYIKSLNLDSNNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTDFCPNDWT 371

Query: 72  VTNFDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           V +FDFKEEPEF LDDSFFP+GC  NSLMEDIVGASVDEANN DRKRYN
Sbjct: 372 VPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYN 420

[Close]

BLAST of Bhi02G000346 vs. NCBI nr
Match: KGN63574.1 (hypothetical protein Csa_1G004900 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 12  RDNIKSLNLDSNNVTRY-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFFPNHWTVTN 71
           +D IKSLNLDSN   R+  XXXXXXXXXXXXXXXXXXXXXXXXXXX  TDF PN WTV +
Sbjct: 311 QDYIKSLNLDSNTAVRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTDFCPNDWTVPD 370

Query: 72  FDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           FDFKEEPEF LDDSFFP+GC  NSLMEDIVGASVDEANN DRKRYN
Sbjct: 371 FDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYN 416

[Close]

BLAST of Bhi02G000346 vs. NCBI nr
Match: XP_011660332.1 (PREDICTED: transcription factor MYB98 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 12  RDNIKSLNLDSNNVTRY-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFFPNHWTVTN 71
           +D IKSLNLDSN   R+  XXXXXXXXXXXXXXXXXXXXXXXXXXX  TDF PN WTV +
Sbjct: 189 QDYIKSLNLDSNTAVRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTDFCPNDWTVPD 248

Query: 72  FDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           FDFKEEPEF LDDSFFP+GC  NSLMEDIVGASVDEANN DRKRYN
Sbjct: 249 FDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYN 294

[Close]

BLAST of Bhi02G000346 vs. NCBI nr
Match: XP_008453673.1 (PREDICTED: transcription factor MYB98-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 5.5e-20
Identity = 87/109 (79.82%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 12  RDNIKSLNLDSNNVT----RYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFFPNHWT 71
           +D IKSLNLDSNN         XXXXXXXXXXXXXXXXXXXXXXXXXXX  TDF PN WT
Sbjct: 312 QDYIKSLNLDSNNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTDFCPNDWT 371

Query: 72  VTNFDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           V +FDFKEEPEF LDDSFFP+GC  NSLMEDIVGASVDEANN DRKRYN
Sbjct: 372 VPDFDFKEEPEFYLDDSFFPEGCSINSLMEDIVGASVDEANNYDRKRYN 420

[Close]

BLAST of Bhi02G000346 vs. NCBI nr
Match: XP_022921379.1 (transcription factor MYB98-like [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 8.8e-18
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 59  TDFFPNHWTVTNFDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           T+F PN WTV NFDFK+EPE  LDDSFFP+GC  NSLMEDI GASVD+ANN DRKRYN
Sbjct: 357 TEFCPNDWTVPNFDFKDEPEIYLDDSFFPEGCSINSLMEDIAGASVDDANNYDRKRYN 414

[Close]

BLAST of Bhi02G000346 vs. NCBI nr
Match: XP_023516757.1 (transcription factor MYB98-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 8.8e-18
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 59  TDFFPNHWTVTNFDFKEEPEFNLDDSFFPKGCRFNSLMEDIVGASVDEANNDDRKRYN 117
           T+F PN WTV NFDFK+EPE  LDDSFFP+GC  NSLMEDI GASVD+ANN DRKRYN
Sbjct: 357 TEFCPNDWTVPNFDFKDEPEIYLDDSFFPEGCSINSLMEDIAGASVDDANNYDRKRYN 414

The following BLAST results are available for this feature:

BLAST of Bhi02G000346 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi02G000346 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi02G000346 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRG5\|A0A0A0LRG5_CUCSA	7.4e-21	82.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004900 PE=4 SV=1	[more]
tr\|A0A1S3BWA8\|A0A1S3BWA8_CUCME	3.7e-20	79.82	transcription factor MYB98-like OS=Cucumis melo OX=3656 GN=LOC103494322 PE=4 SV=...	[more]

BLAST of Bhi02G000346 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63574.1	1.1e-20	82.08	hypothetical protein Csa_1G004900 [Cucumis sativus]	[more]
XP_011660332.1	1.1e-20	82.08	PREDICTED: transcription factor MYB98 [Cucumis sativus]	[more]
XP_008453673.1	5.5e-20	79.82	PREDICTED: transcription factor MYB98-like [Cucumis melo]	[more]
XP_022921379.1	8.8e-18	77.59	transcription factor MYB98-like [Cucurbita moschata]	[more]
XP_023516757.1	8.8e-18	77.59	transcription factor MYB98-like [Cucurbita pepo subsp. pepo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0032501	multicellular organismal process
biological_process	GO:0044699	single-organism process
biological_process	GO:0009553	embryo sac development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000346	Bhi02M000346	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi02G000346	CmaCh10G001230	Cucurbita maxima (Rimu)	cmawgoB0088
Bhi02G000346	CmoCh10G001270	Cucurbita moschata (Rifu)	cmowgoB0081
Bhi02G000346	Lsi06G015570	Bottle gourd (USVL1VR-Ls)	lsiwgoB501
Bhi02G000346	Cla97C06G126720	Watermelon (97103) v2	wgowmbB649

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G000346	Cucumber (Gy14) v1	cgywgoB417
Bhi02G000346	Cucumber (Gy14) v2	cgybwgoB092
Bhi02G000346	Cucurbita maxima (Rimu)	cmawgoB0167
Bhi02G000346	Cucurbita moschata (Rifu)	cmowgoB0160
Bhi02G000346	Cucurbita pepo (Zucchini)	cpewgoB0459
Bhi02G000346	Cucurbita pepo (Zucchini)	cpewgoB0883
Bhi02G000346	Wild cucumber (PI 183967)	cpiwgoB098
Bhi02G000346	Cucumber (Chinese Long) v3	cucwgoB103
Bhi02G000346	Cucumber (Chinese Long) v2	cuwgoB095
Bhi02G000346	Melon (DHL92) v3.6.1	medwgoB291
Bhi02G000346	Melon (DHL92) v3.5.1	mewgoB291
Bhi02G000346	Watermelon (Charleston Gray)	wcgwgoB255
Bhi02G000346	Watermelon (Charleston Gray)	wcgwgoB541
Bhi02G000346	Watermelon (97103) v2	wgowmbB623
Bhi02G000346	Watermelon (97103) v1	wgowmB678
Bhi02G000346	Silver-seed gourd	carwgoB0449
Bhi02G000346	Silver-seed gourd	carwgoB1227