Bhi02G000345 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G000345
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ARM repeat superfamily protein
Location	chr2 : 8627338 .. 8627777 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAACAAACTGTTGCATTACGTGACCGAGTCAAGCAAAAACAAGACCTACATCGGCAAATGCAGAACATCGAATGTTTGCAAAACAGAGAGGGTAGTCGAAGCGCTTGTGCATTTCGAGCAAGATGAGAAAGGGCAAGGATTCTCAAATTGTATGCTTGATGTATCTTATTTTCCTATAGTTTGTTATAGAATCAAATGGTATAGTTGTTGTGTTGATAATGAGGGGTGTTAATTGATACGAACCTAAAAGTTCATTTCCCGCTTGTTGTGCATTTCTACAATGTCGCCAAGCATCCGGCCAACACCTTCCCCGACCGCCCTCTCCTTGTCCATTTCCAGCAACCGATGGTCTTGAATGCGCTCTTCGCGGAGAGAGAAGACCGGCGACTTGCTGACTTCAGAGCAGGCTTGTTGGTGGTAGCGGTGAAAAAGTGA

mRNA sequence

ATGCACAACAAACTGTTGCATTACGTGACCGAGTCAAGCAAAAACAAGACCTACATCGGCAAATGCAGAACATCGAATGTTTGCAAAACAGAGAGGGTAGTCGAAGCGCTTGTGCATTTCGAGCAAGATGAGAAAGGGCAAGGATTCTCAAATTGTATGCTTGATCAACCGATGGTCTTGAATGCGCTCTTCGCGGAGAGAGAAGACCGGCGACTTGCTGACTTCAGAGCAGGCTTGTTGGTGGTAGCGGTGAAAAAGTGA

Coding sequence (CDS)

ATGCACAACAAACTGTTGCATTACGTGACCGAGTCAAGCAAAAACAAGACCTACATCGGCAAATGCAGAACATCGAATGTTTGCAAAACAGAGAGGGTAGTCGAAGCGCTTGTGCATTTCGAGCAAGATGAGAAAGGGCAAGGATTCTCAAATTGTATGCTTGATCAACCGATGGTCTTGAATGCGCTCTTCGCGGAGAGAGAAGACCGGCGACTTGCTGACTTCAGAGCAGGCTTGTTGGTGGTAGCGGTGAAAAAGTGA

Protein sequence

MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLDQPMVLNALFAEREDRRLADFRAGLLVVAVKK

Homology

[Close]

BLAST of Bhi02G000345 vs. TAIR10
Match: AT4G20060.1 (ARM repeat superfamily protein)

HSP 1 Score: 40.4 bits (93), Expect = 6.4e-04
Identity = 21/55 (38.18%), Postives = 31/55 (56.36%), Query Frame = 0


Query: 1    MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
            M NKL H+  +S K     G+   +     +  V  +V FE +E+GQGFS+C+LD
Sbjct: 1043 MSNKLFHHAIKSGKKPDVSGRFDWA-----KSGVSTVVQFEPNERGQGFSSCLLD 1092

[Close]

BLAST of Bhi02G000345 vs. TrEMBL
Match: tr|A0A1S3CM44|A0A1S3CM44_CUCME (uncharacterized protein LOC103502541 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502541 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 826 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 880

[Close]

BLAST of Bhi02G000345 vs. TrEMBL
Match: tr|A0A1S3CMM3|A0A1S3CMM3_CUCME (uncharacterized protein LOC103502541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502541 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1    MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
            MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 1054 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 1108

[Close]

BLAST of Bhi02G000345 vs. TrEMBL
Match: tr|A0A1S3CNQ5|A0A1S3CNQ5_CUCME (uncharacterized protein LOC103502541 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502541 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 848 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 902

[Close]

BLAST of Bhi02G000345 vs. TrEMBL
Match: tr|A0A1S3CM96|A0A1S3CM96_CUCME (uncharacterized protein LOC103502541 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502541 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 841 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 895

[Close]

BLAST of Bhi02G000345 vs. TrEMBL
Match: tr|A0A0A0KMS4|A0A0A0KMS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G083300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTES+KN+ YIGKCRTS+V KT+R VE  V FE DEKGQGFSNC+ D
Sbjct: 849 MHNKLLHYVTESTKNEAYIGKCRTSSVRKTDRDVEVFVQFEPDEKGQGFSNCLFD 903

[Close]

BLAST of Bhi02G000345 vs. NCBI nr
Match: XP_008464722.1 (PREDICTED: uncharacterized protein LOC103502541 isoform X1 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1    MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
            MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 1054 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 1108

[Close]

BLAST of Bhi02G000345 vs. NCBI nr
Match: XP_008464723.1 (PREDICTED: uncharacterized protein LOC103502541 isoform X2 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 848 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 902

[Close]

BLAST of Bhi02G000345 vs. NCBI nr
Match: XP_008464724.1 (PREDICTED: uncharacterized protein LOC103502541 isoform X3 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 841 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 895

[Close]

BLAST of Bhi02G000345 vs. NCBI nr
Match: XP_008464725.1 (PREDICTED: uncharacterized protein LOC103502541 isoform X4 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTESSKN+ YIGKC TS VCKT+RV+E  V FE DEKGQGFSNC+ D
Sbjct: 826 MHNKLLHYVTESSKNEAYIGKCSTSGVCKTDRVIEVFVQFEPDEKGQGFSNCLFD 880

[Close]

BLAST of Bhi02G000345 vs. NCBI nr
Match: KGN49717.1 (hypothetical protein Csa_5G083300 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 7.9e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MHNKLLHYVTESSKNKTYIGKCRTSNVCKTERVVEALVHFEQDEKGQGFSNCMLD 56
           MHNKLLHYVTES+KN+ YIGKCRTS+V KT+R VE  V FE DEKGQGFSNC+ D
Sbjct: 849 MHNKLLHYVTESTKNEAYIGKCRTSSVRKTDRDVEVFVQFEPDEKGQGFSNCLFD 903

The following BLAST results are available for this feature:

BLAST of Bhi02G000345 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi02G000345 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20060.1	6.4e-04	38.18	ARM repeat superfamily protein	[more]

BLAST of Bhi02G000345 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM44\|A0A1S3CM44_CUCME	1.2e-17	78.18	uncharacterized protein LOC103502541 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CMM3\|A0A1S3CMM3_CUCME	1.2e-17	78.18	uncharacterized protein LOC103502541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CNQ5\|A0A1S3CNQ5_CUCME	1.2e-17	78.18	uncharacterized protein LOC103502541 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CM96\|A0A1S3CM96_CUCME	1.2e-17	78.18	uncharacterized protein LOC103502541 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KMS4\|A0A0A0KMS4_CUCSA	5.2e-16	76.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G083300 PE=4 SV=1	[more]

BLAST of Bhi02G000345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464722.1	1.9e-17	78.18	PREDICTED: uncharacterized protein LOC103502541 isoform X1 [Cucumis melo]	[more]
XP_008464723.1	1.9e-17	78.18	PREDICTED: uncharacterized protein LOC103502541 isoform X2 [Cucumis melo]	[more]
XP_008464724.1	1.9e-17	78.18	PREDICTED: uncharacterized protein LOC103502541 isoform X3 [Cucumis melo]	[more]
XP_008464725.1	1.9e-17	78.18	PREDICTED: uncharacterized protein LOC103502541 isoform X4 [Cucumis melo]	[more]
KGN49717.1	7.9e-16	76.36	hypothetical protein Csa_5G083300 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034472	snRNA 3'-end processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0032039	integrator complex

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000345	Bhi02M000345	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G000345	Cucumber (Gy14) v1	cgywgoB417
Bhi02G000345	Cucumber (Gy14) v2	cgybwgoB092
Bhi02G000345	Cucurbita maxima (Rimu)	cmawgoB0088
Bhi02G000345	Cucurbita maxima (Rimu)	cmawgoB0167
Bhi02G000345	Cucurbita moschata (Rifu)	cmowgoB0081
Bhi02G000345	Cucurbita moschata (Rifu)	cmowgoB0160
Bhi02G000345	Cucurbita pepo (Zucchini)	cpewgoB0459
Bhi02G000345	Cucurbita pepo (Zucchini)	cpewgoB0883
Bhi02G000345	Wild cucumber (PI 183967)	cpiwgoB098
Bhi02G000345	Cucumber (Chinese Long) v3	cucwgoB103
Bhi02G000345	Cucumber (Chinese Long) v2	cuwgoB095
Bhi02G000345	Bottle gourd (USVL1VR-Ls)	lsiwgoB501
Bhi02G000345	Melon (DHL92) v3.6.1	medwgoB291
Bhi02G000345	Melon (DHL92) v3.5.1	mewgoB291
Bhi02G000345	Watermelon (Charleston Gray)	wcgwgoB255
Bhi02G000345	Watermelon (Charleston Gray)	wcgwgoB541
Bhi02G000345	Watermelon (97103) v2	wgowmbB623
Bhi02G000345	Watermelon (97103) v2	wgowmbB649
Bhi02G000345	Watermelon (97103) v1	wgowmB678
Bhi02G000345	Silver-seed gourd	carwgoB0449
Bhi02G000345	Silver-seed gourd	carwgoB1227