Bhi01G002741 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G002741
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA-directed RNA polymerase
Location	chr1 : 89860478 .. 89860705 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGCTAACACTGAGAAATTGATGCTCAATCTAGCAAAAGACTACGATGGGTATCAGTTTGATTTGCCAGCCTTTCTGGATTTCCGTGGTAGAATCTACCGCAGTGGTATCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCTTGATAGTCTTTGCGGAGCGGATGAAAGCCACAAAACAATCTGTAATGAGAAGGATTTCCGCAAAAATGCTAATTGTGCTATAG

mRNA sequence

CGTGCTAACACTGAGAAATTGATGCTCAATCTAGCAAAAGACTACGATGGGTATCAGTTTGATTTGCCAGCCTTTCTGGATTTCCGTGGTAGAATCTACCGCAGTGGTATCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCTTGATAGTCTTTGCGGAGCGGATGAAAGCCACAAAACAATCTGTAATGAGAAGGATTTCCGCAAAAATGCTAATTGTGCTATAG

Coding sequence (CDS)

CGTGCTAACACTGAGAAATTGATGCTCAATCTAGCAAAAGACTACGATGGGTATCAGTTTGATTTGCCAGCCTTTCTGGATTTCCGTGGTAGAATCTACCGCAGTGGTATCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCTTGATAGTCTTTGCGGAGCGGATGAAAGCCACAAAACAATCTGTAATGAGAAGGATTTCCGCAAAAATGCTAATTGTGCTATAG

Protein sequence

RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAERMKATKQSVMRRISAKMLIVL

Homology

[Close]

BLAST of Bhi01G002741 vs. Swiss-Prot
Match: sp|P10581|RPOP_MAIZE (Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-08
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5   EKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAERMKATKQSVM 64
           E   + +A+ Y  Y+   P FLDFRGR YR G  HFH+RDL RSLI+F E   +   ++ 
Sbjct: 514 ELYTMKIAEAYLDYKIYFPIFLDFRGRNYRHGPFHFHERDLVRSLIIFDESDDSAAHTIN 573

Query: 65  RRISAKML 73
             +  ++L
Sbjct: 574 SDVGDRIL 581

[Close]

BLAST of Bhi01G002741 vs. Swiss-Prot
Match: sp|P33539|RPOP_AGABT (Probable DNA-directed RNA polymerase OS=Agaricus bitorquis OX=5343 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-04
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 8   MLNLAKDYDGYQFDLPAFLDFRGRIY-RSGILHFHDRDLARSLIVFAE 55
           +++LA  Y   +F LP ++DFRGR+Y  S  + +   DLARSLI+FA+
Sbjct: 595 IISLASLYKDNEFYLPVYVDFRGRVYPLSNYISYQGGDLARSLILFAD 642

[Close]

BLAST of Bhi01G002741 vs. TrEMBL
Match: tr|G9HNS3|G9HNS3_PHODC (DNA-directed RNA polymerase OS=Phoenix dactylifera OX=42345 GN=RNA_pol PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-17
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAERMKATK 60
           RA  E+ ++ LA  YDGYQFDLPAF+DFRGRIYRSG+LHFH+RDL+RSLIVFA + KA  
Sbjct: 345 RARYEEFVIRLASAYDGYQFDLPAFMDFRGRIYRSGVLHFHERDLSRSLIVFAGQPKALN 404

Query: 61  QSVMRRIS 69
             + + IS
Sbjct: 405 SQLAKTIS 412

[Close]

BLAST of Bhi01G002741 vs. TrEMBL
Match: tr|A0A101M3N5|A0A101M3N5_PICGL (RNA polymerase OS=Picea glauca OX=3330 GN=rpo PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAE 55
           R+  E L++ LA+ YDGY FDLPAFLDFRGRIYRSG+LHFH+RDLARSLIVFA+
Sbjct: 279 RSRYENLIMKLAQAYDGYHFDLPAFLDFRGRIYRSGVLHFHERDLARSLIVFAD 332

[Close]

BLAST of Bhi01G002741 vs. TrEMBL
Match: tr|A0A068VGI8|A0A068VGI8_COFCA (DNA-directed RNA polymerase OS=Coffea canephora OX=49390 GN=GSCOC_T00012461001 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAE 55
          R++ E+L++ LA  YDGY FDLPAFLDFRGRI RSGILHFH+RDLARSLI+FA+
Sbjct: 25 RSHYEQLIIKLASAYDGYHFDLPAFLDFRGRICRSGILHFHERDLARSLILFAD 78

[Close]

BLAST of Bhi01G002741 vs. TrEMBL
Match: tr|G9FCM3|G9FCM3_9LAMI (DNA-directed RNA polymerase OS=Dorcoceras hygrometricum OX=472368 GN=orf2 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 2   ANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAER 56
           +  E++++ LA  YDGYQF LPAFLDFRGRIYRSGILHFH+RDLARS+I+FA++
Sbjct: 79  SRNERMIIKLADAYDGYQFYLPAFLDFRGRIYRSGILHFHERDLARSMIMFADQ 132

[Close]

BLAST of Bhi01G002741 vs. TrEMBL
Match: tr|Q6QZP0|Q6QZP0_DAUCA (DNA-directed RNA polymerase OS=Daucus carota OX=4039 GN=Rpo PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-14
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAERMKATK 60
           RA  E+ +L LA  Y+GY F LPAFLDFRGRIYRSGILHFH+RDLARSL++FA+      
Sbjct: 489 RAGYEQYILKLAIAYEGYHFYLPAFLDFRGRIYRSGILHFHERDLARSLVIFAKEDSQVS 548

Query: 61  QSV 64
            S+
Sbjct: 549 SSI 551

[Close]

BLAST of Bhi01G002741 vs. NCBI nr
Match: YP_005090363.1 (DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera] >AEM43903.1 DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera] >AXQ02557.1 DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera])

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAERMKATK 60
           RA  E+ ++ LA  YDGYQFDLPAF+DFRGRIYRSG+LHFH+RDL+RSLIVFA + KA  
Sbjct: 345 RARYEEFVIRLASAYDGYQFDLPAFMDFRGRIYRSGVLHFHERDLSRSLIVFAGQPKALN 404

Query: 61  QSVMRRIS 69
             + + IS
Sbjct: 405 SQLAKTIS 412

[Close]

BLAST of Bhi01G002741 vs. NCBI nr
Match: KUM50494.1 (RNA polymerase (mitochondrion) [Picea glauca])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAE 55
           R+  E L++ LA+ YDGY FDLPAFLDFRGRIYRSG+LHFH+RDLARSLIVFA+
Sbjct: 279 RSRYENLIMKLAQAYDGYHFDLPAFLDFRGRIYRSGVLHFHERDLARSLIVFAD 332

[Close]

BLAST of Bhi01G002741 vs. NCBI nr
Match: YP_009315942.1 (DNA-dependent RNA polymerase (mitochondrion) [Cocos nucifera] >AOX12936.1 DNA-dependent RNA polymerase (mitochondrion) [Cocos nucifera])

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFA 54
           RA TE  +L LA  YDGY+F LPAFLDFRGRIYRSGILHFH+RD+ARSLIVFA
Sbjct: 422 RARTESFILTLASAYDGYKFYLPAFLDFRGRIYRSGILHFHERDIARSLIVFA 474

[Close]

BLAST of Bhi01G002741 vs. NCBI nr
Match: XP_022975381.1 (uncharacterized protein LOC111474651 [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-15
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFA 54
          R+  E+L+LNLA+ YDGY+F LPAFLDFRGRIYRSG+LHFH+ DLARSLIVFA
Sbjct: 39 RSRNERLILNLARVYDGYKFYLPAFLDFRGRIYRSGVLHFHECDLARSLIVFA 91

[Close]

BLAST of Bhi01G002741 vs. NCBI nr
Match: XP_022974959.1 (uncharacterized protein LOC111473779 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   RANTEKLMLNLAKDYDGYQFDLPAFLDFRGRIYRSGILHFHDRDLARSLIVFAE 55
           R+  E+L+LNLA+ YDGY+F LPAFLDFRGRIYR GILHFH+ DLARSLIVFA+
Sbjct: 499 RSRYERLILNLARAYDGYKFYLPAFLDFRGRIYRCGILHFHECDLARSLIVFAD 552

The following BLAST results are available for this feature:

BLAST of Bhi01G002741 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G002741 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10581\|RPOP_MAIZE	6.1e-08	41.18	Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1	[more]
sp\|P33539\|RPOP_AGABT	4.1e-04	45.83	Probable DNA-directed RNA polymerase OS=Agaricus bitorquis OX=5343 PE=3 SV=1	[more]

BLAST of Bhi01G002741 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|G9HNS3\|G9HNS3_PHODC	9.2e-17	64.71	DNA-directed RNA polymerase OS=Phoenix dactylifera OX=42345 GN=RNA_pol PE=3 SV=1	[more]
tr\|A0A101M3N5\|A0A101M3N5_PICGL	7.7e-16	75.93	RNA polymerase OS=Picea glauca OX=3330 GN=rpo PE=4 SV=1	[more]
tr\|A0A068VGI8\|A0A068VGI8_COFCA	1.1e-14	74.07	DNA-directed RNA polymerase OS=Coffea canephora OX=49390 GN=GSCOC_T00012461001 P...	[more]
tr\|G9FCM3\|G9FCM3_9LAMI	1.9e-14	70.37	DNA-directed RNA polymerase OS=Dorcoceras hygrometricum OX=472368 GN=orf2 PE=3 S...	[more]
tr\|Q6QZP0\|Q6QZP0_DAUCA	5.6e-14	63.49	DNA-directed RNA polymerase OS=Daucus carota OX=4039 GN=Rpo PE=3 SV=1	[more]

BLAST of Bhi01G002741 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_005090363.1	1.4e-16	64.71	DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera] >AEM43903.1 D...	[more]
KUM50494.1	1.2e-15	75.93	RNA polymerase (mitochondrion) [Picea glauca]	[more]
YP_009315942.1	3.4e-15	79.25	DNA-dependent RNA polymerase (mitochondrion) [Cocos nucifera] >AOX12936.1 DNA-de...	[more]
XP_022975381.1	5.8e-15	77.36	uncharacterized protein LOC111474651 [Cucurbita maxima]	[more]
XP_022974959.1	1.3e-14	75.93	uncharacterized protein LOC111473779 [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006390	transcription from mitochondrial promoter
cellular_component	GO:0034245	mitochondrial DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M002741	Bhi01M002741	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	SSF56672	DNA/RNA polymerases	coord: 4..59

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G002741	Cucumber (Gy14) v1	cgywgoB127
Bhi01G002741	Cucumber (Gy14) v2	cgybwgoB139
Bhi01G002741	Cucumber (Gy14) v2	cgybwgoB362
Bhi01G002741	Cucurbita maxima (Rimu)	cmawgoB0337
Bhi01G002741	Cucurbita maxima (Rimu)	cmawgoB0565
Bhi01G002741	Cucurbita moschata (Rifu)	cmowgoB0327
Bhi01G002741	Cucurbita moschata (Rifu)	cmowgoB0562
Bhi01G002741	Cucurbita pepo (Zucchini)	cpewgoB0676
Bhi01G002741	Cucurbita pepo (Zucchini)	cpewgoB0793
Bhi01G002741	Wild cucumber (PI 183967)	cpiwgoB380
Bhi01G002741	Cucumber (Chinese Long) v3	cucwgoB152
Bhi01G002741	Cucumber (Chinese Long) v3	cucwgoB382
Bhi01G002741	Cucumber (Chinese Long) v2	cuwgoB145
Bhi01G002741	Cucumber (Chinese Long) v2	cuwgoB378
Bhi01G002741	Bottle gourd (USVL1VR-Ls)	lsiwgoB485
Bhi01G002741	Bottle gourd (USVL1VR-Ls)	lsiwgoB546
Bhi01G002741	Melon (DHL92) v3.6.1	medwgoB574
Bhi01G002741	Melon (DHL92) v3.5.1	mewgoB569
Bhi01G002741	Watermelon (Charleston Gray)	wcgwgoB523
Bhi01G002741	Watermelon (Charleston Gray)	wcgwgoB562
Bhi01G002741	Watermelon (97103) v2	wgowmbB174
Bhi01G002741	Watermelon (97103) v2	wgowmbB209
Bhi01G002741	Watermelon (97103) v1	wgowmB190
Bhi01G002741	Silver-seed gourd	carwgoB0145
Bhi01G002741	Silver-seed gourd	carwgoB0246