Bhi01G002530 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G002530
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	rRNA intron-encoded homing endonuclease
Location	chr1 : 81795881 .. 81796062 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCTGAGTGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

mRNA sequence

ATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCTGAGTGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Coding sequence (CDS)

ATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCTGAGTGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Protein sequence

TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA

Homology

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BLAST of Bhi01G002530 vs. TrEMBL
Match: tr|A0A0A0LDF7|A0A0A0LDF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQGLADVALRTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 54  TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 112

[Close]

BLAST of Bhi01G002530 vs. TrEMBL
Match: tr|A0A2N9I7Q4|A0A2N9I7Q4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48564 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQGLADV  RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 235 TVLVSTINDADQGLADVTYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 293

[Close]

BLAST of Bhi01G002530 vs. TrEMBL
Match: tr|A0A2N9HA19|A0A2N9HA19_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11093 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQGLADV  RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 216 TVLVSTINDADQGLADVTYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 274

[Close]

BLAST of Bhi01G002530 vs. TrEMBL
Match: tr|A0A2N9HFA0|A0A2N9HFA0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11090 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQGLADV  RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 263 TVLVSTINDADQGLADVTYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 321

[Close]

BLAST of Bhi01G002530 vs. TrEMBL
Match: tr|A0A2N9IHA6|A0A2N9IHA6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51321 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQGLADV  RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 237 TVLVSTINDADQGLADVTYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 295

[Close]

BLAST of Bhi01G002530 vs. NCBI nr
Match: KGN58106.1 (hypothetical protein Csa_3G512980 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-22
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQGLADVALRTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 54  TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 112

[Close]

BLAST of Bhi01G002530 vs. NCBI nr
Match: ELU14430.1 (hypothetical protein CAPTEDRAFT_143211, partial [Capitella teleta])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
          TVLVSTINDADQG ADVA RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 5  TVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 63

[Close]

BLAST of Bhi01G002530 vs. NCBI nr
Match: XP_017609266.1 (PREDICTED: uncharacterized protein LOC108455178 [Gossypium arboreum])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQG ADVA RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 158 TVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 216

[Close]

BLAST of Bhi01G002530 vs. NCBI nr
Match: XP_017609669.1 (PREDICTED: uncharacterized protein LOC108455641 [Gossypium arboreum])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQG ADVA RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 165 TVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 223

[Close]

BLAST of Bhi01G002530 vs. NCBI nr
Match: XP_017609674.1 (PREDICTED: uncharacterized protein LOC108455646 [Gossypium arboreum])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   TVLVSTINDADQGLADVALRTPPAPYEKSKSLGSEWSMVARLKLKGIDGRAPPGVEPAA 60
           TVLVSTINDADQG ADVA RTPPAPYEKSKSLGS  SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 167 TVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA 225

The following BLAST results are available for this feature:

BLAST of Bhi01G002530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G002530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G002530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDF7\|A0A0A0LDF7_CUCSA	4.4e-22	96.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1	[more]
tr\|A0A2N9I7Q4\|A0A2N9I7Q4_FAGSY	4.8e-21	93.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48564 PE=4 SV=1	[more]
tr\|A0A2N9HA19\|A0A2N9HA19_FAGSY	4.8e-21	93.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11093 PE=4 SV=1	[more]
tr\|A0A2N9HFA0\|A0A2N9HFA0_FAGSY	4.8e-21	93.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11090 PE=4 SV=1	[more]
tr\|A0A2N9IHA6\|A0A2N9IHA6_FAGSY	4.8e-21	93.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51321 PE=4 SV=1	[more]

BLAST of Bhi01G002530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58106.1	6.6e-22	96.61	hypothetical protein Csa_3G512980 [Cucumis sativus]	[more]
ELU14430.1	9.5e-21	93.22	hypothetical protein CAPTEDRAFT_143211, partial [Capitella teleta]	[more]
XP_017609266.1	9.5e-21	93.22	PREDICTED: uncharacterized protein LOC108455178 [Gossypium arboreum]	[more]
XP_017609669.1	9.5e-21	93.22	PREDICTED: uncharacterized protein LOC108455641 [Gossypium arboreum]	[more]
XP_017609674.1	9.5e-21	93.22	PREDICTED: uncharacterized protein LOC108455646 [Gossypium arboreum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004519	endonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M002530	Bhi01M002530	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	FAMILY NOT NAMED	coord: 1..59

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G002530	Cucumber (Gy14) v1	cgywgoB553
Bhi01G002530	Cucumber (Gy14) v1	cgywgoB554
Bhi01G002530	Cucumber (Gy14) v2	cgybwgoB352
Bhi01G002530	Cucumber (Gy14) v2	cgybwgoB364
Bhi01G002530	Cucurbita maxima (Rimu)	cmawgoB0435
Bhi01G002530	Cucurbita maxima (Rimu)	cmawgoB0849
Bhi01G002530	Cucurbita moschata (Rifu)	cmowgoB0432
Bhi01G002530	Cucurbita moschata (Rifu)	cmowgoB0846
Bhi01G002530	Cucurbita pepo (Zucchini)	cpewgoB0292
Bhi01G002530	Cucurbita pepo (Zucchini)	cpewgoB0513
Bhi01G002530	Wild cucumber (PI 183967)	cpiwgoB367
Bhi01G002530	Wild cucumber (PI 183967)	cpiwgoB382
Bhi01G002530	Cucumber (Chinese Long) v3	cucwgoB370
Bhi01G002530	Cucumber (Chinese Long) v3	cucwgoB385
Bhi01G002530	Cucumber (Chinese Long) v2	cuwgoB365
Bhi01G002530	Cucumber (Chinese Long) v2	cuwgoB380
Bhi01G002530	Bottle gourd (USVL1VR-Ls)	lsiwgoB551
Bhi01G002530	Bottle gourd (USVL1VR-Ls)	lsiwgoB561
Bhi01G002530	Melon (DHL92) v3.6.1	medwgoB578
Bhi01G002530	Melon (DHL92) v3.5.1	mewgoB573
Bhi01G002530	Watermelon (Charleston Gray)	wcgwgoB563
Bhi01G002530	Watermelon (97103) v2	wgowmbB211
Bhi01G002530	Watermelon (97103) v1	wgowmB181
Bhi01G002530	Silver-seed gourd	carwgoB0054
Bhi01G002530	Silver-seed gourd	carwgoB0769