Bhi01G002425 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G002425
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr1 : 77549030 .. 77549262 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACTGGCCATAGACAAGCATCATTTTCTATTATTGAGGAGTGCATGAAGAAGAAGATTAGCATTGATGATAGTCATCCGATCACACTTAAAGTTATAGTGAATTATATTCGGATTGAGCATGGATTGGACATAAGTTTCCAAAAAGCTTGGTGTGCTCGAGAAGCTGCTGTGAATGAAATTCGAGGACCACCTGAAGAATCTGTTAAGATAATTCCAGCATTTGCATGTTAG

mRNA sequence

TGACTGGCCATAGACAAGCATCATTTTCTATTATTGAGGAGTGCATGAAGAAGAAGATTAGCATTGATGATAGTCATCCGATCACACTTAAAGTTATAGTGAATTATATTCGGATTGAGCATGGATTGGACATAAGTTTCCAAAAAGCTTGGTGTGCTCGAGAAGCTGCTGTGAATGAAATTCGAGGACCACCTGAAGAATCTGTTAAGATAATTCCAGCATTTGCATGTTAG

Coding sequence (CDS)

TGACTGGCCATAGACAAGCATCATTTTCTATTATTGAGGAGTGCATGAAGAAGAAGATTAGCATTGATGATAGTCATCCGATCACACTTAAAGTTATAGTGAATTATATTCGGATTGAGCATGGATTGGACATAAGTTTCCAAAAAGCTTGGTGTGCTCGAGAAGCTGCTGTGAATGAAATTCGAGGACCACCTGAAGAATCTGTTAAGATAATTCCAGCATTTGCATGTTAG

Protein sequence

TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEIRGPPEESVKIIPAFAC

Homology

[Close]

BLAST of Bhi01G002425 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA F++I++  K KIS+  S   TLKVIV++IR EHGL IS+QKAW A EAA+++I
Sbjct: 81  TDHRQAIFTVIKDLNKNKISLAGSELSTLKVIVHFIRAEHGLSISYQKAWYACEAALDDI 140

Query: 61  RGPPEESVKIIPAFA 76
           RG PEES KI+P FA
Sbjct: 141 RGSPEESYKILPRFA 155

[Close]

BLAST of Bhi01G002425 vs. TrEMBL
Match: tr|A0A1S3B4K4|A0A1S3B4K4_CUCME (uncharacterized protein LOC103485740 OS=Cucumis melo OX=3656 GN=LOC103485740 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-13
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HR A+F++I++ +K KIS+  S   T K IV++IR EH L IS+QKAW ARE A+++ 
Sbjct: 52  TDHRLATFTVIKDLIKNKISLTGSELSTPKDIVHFIRAEHDLSISYQKAWRAREVALDDN 111

Query: 61  RGPPEESVKIIPAFA 76
            G PEES K++P FA
Sbjct: 112 HGSPEESYKMLPRFA 126

[Close]

BLAST of Bhi01G002425 vs. TrEMBL
Match: tr|A0A1S3BN44|A0A1S3BN44_CUCME (uncharacterized protein LOC103491857 OS=Cucumis melo OX=3656 GN=LOC103491857 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA+F++I++ ++ KIS+  S   T K IV++IR EHGL IS+QKAW A E A+++I
Sbjct: 34  TDHRQATFTVIKDLIRNKISLAGSELSTPKDIVHFIRSEHGLSISYQKAWRACEVALDDI 93

Query: 61  RGPPEESVKIIPAFA 76
              P++S KI+P FA
Sbjct: 94  HESPKDSYKILPKFA 108

[Close]

BLAST of Bhi01G002425 vs. TrEMBL
Match: tr|A0A1S3CIV7|A0A1S3CIV7_CUCME (uncharacterized protein LOC103501336 OS=Cucumis melo OX=3656 GN=LOC103501336 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.0e-12
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA+F++I++ +K KIS+  S   T K IV++I  EHGL IS+QKAW A + A+++I
Sbjct: 91  TDHRQATFNVIKDLIKNKISLAGSKLSTPKNIVHFICDEHGLSISYQKAWRACKVALDDI 150

Query: 61  RGPPEESVKIIPAFA 76
           RG  E+S K++P FA
Sbjct: 151 RGSLEDSYKMLPRFA 165

[Close]

BLAST of Bhi01G002425 vs. TrEMBL
Match: tr|A0A1S3CLS8|A0A1S3CLS8_CUCME (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo OX=3656 GN=LOC103502368 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA+F +I++ +K KIS+  S   T K IV++IR EHGL+IS+QKAW  REAA+++I
Sbjct: 45  TDHRQATFIVIKDLIKNKISLAGSKLSTPKDIVHFIRAEHGLNISYQKAWRTREAALDDI 104

Query: 61  RGPPEESVKIIPAFA 76
               E+S K++  FA
Sbjct: 105 HRSLEDSYKMLSIFA 119

[Close]

BLAST of Bhi01G002425 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA F++I++  K KIS+  S   TLKVIV++IR EHGL IS+QKAW A EAA+++I
Sbjct: 81  TDHRQAIFTVIKDLNKNKISLAGSELSTLKVIVHFIRAEHGLSISYQKAWYACEAALDDI 140

Query: 61  RGPPEESVKIIPAFA 76
           RG PEES KI+P FA
Sbjct: 141 RGSPEESYKILPRFA 155

[Close]

BLAST of Bhi01G002425 vs. NCBI nr
Match: XP_008441658.1 (PREDICTED: uncharacterized protein LOC103485740 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.2e-13
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HR A+F++I++ +K KIS+  S   T K IV++IR EH L IS+QKAW ARE A+++ 
Sbjct: 52  TDHRLATFTVIKDLIKNKISLTGSELSTPKDIVHFIRAEHDLSISYQKAWRAREVALDDN 111

Query: 61  RGPPEESVKIIPAFA 76
            G PEES K++P FA
Sbjct: 112 HGSPEESYKMLPRFA 126

[Close]

BLAST of Bhi01G002425 vs. NCBI nr
Match: XP_008450197.1 (PREDICTED: uncharacterized protein LOC103491857 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA+F++I++ ++ KIS+  S   T K IV++IR EHGL IS+QKAW A E A+++I
Sbjct: 34  TDHRQATFTVIKDLIRNKISLAGSELSTPKDIVHFIRSEHGLSISYQKAWRACEVALDDI 93

Query: 61  RGPPEESVKIIPAFA 76
              P++S KI+P FA
Sbjct: 94  HESPKDSYKILPKFA 108

[Close]

BLAST of Bhi01G002425 vs. NCBI nr
Match: XP_008463110.1 (PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA+F++I++ +K KIS+  S   T K IV++I  EHGL IS+QKAW A + A+++I
Sbjct: 91  TDHRQATFNVIKDLIKNKISLAGSKLSTPKNIVHFICDEHGLSISYQKAWRACKVALDDI 150

Query: 61  RGPPEESVKIIPAFA 76
           RG  E+S K++P FA
Sbjct: 151 RGSLEDSYKMLPRFA 165

[Close]

BLAST of Bhi01G002425 vs. NCBI nr
Match: XP_008464510.1 (PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   TGHRQASFSIIEECMKKKISIDDSHPITLKVIVNYIRIEHGLDISFQKAWCAREAAVNEI 60
           T HRQA+F +I++ +K KIS+  S   T K IV++IR EHGL+IS+QKAW  REAA+++I
Sbjct: 45  TDHRQATFIVIKDLIKNKISLAGSKLSTPKDIVHFIRAEHGLNISYQKAWRTREAALDDI 104

Query: 61  RGPPEESVKIIPAFA 76
               E+S K++  FA
Sbjct: 105 HRSLEDSYKMLSIFA 119

The following BLAST results are available for this feature:

BLAST of Bhi01G002425 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G002425 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G002425 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4T7\|A0A1S4E4T7_CUCME	7.1e-17	61.33	uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=...	[more]
tr\|A0A1S3B4K4\|A0A1S3B4K4_CUCME	4.8e-13	52.00	uncharacterized protein LOC103485740 OS=Cucumis melo OX=3656 GN=LOC103485740 PE=...	[more]
tr\|A0A1S3BN44\|A0A1S3BN44_CUCME	1.4e-12	50.67	uncharacterized protein LOC103491857 OS=Cucumis melo OX=3656 GN=LOC103491857 PE=...	[more]
tr\|A0A1S3CIV7\|A0A1S3CIV7_CUCME	9.0e-12	50.67	uncharacterized protein LOC103501336 OS=Cucumis melo OX=3656 GN=LOC103501336 PE=...	[more]
tr\|A0A1S3CLS8\|A0A1S3CLS8_CUCME	1.2e-11	50.67	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo OX=3656 GN=LOC1035023...	[more]

BLAST of Bhi01G002425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902990.1	1.1e-16	61.33	PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo]	[more]
XP_008441658.1	7.2e-13	52.00	PREDICTED: uncharacterized protein LOC103485740 [Cucumis melo]	[more]
XP_008450197.1	2.1e-12	50.67	PREDICTED: uncharacterized protein LOC103491857 [Cucumis melo]	[more]
XP_008463110.1	1.4e-11	50.67	PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo]	[more]
XP_008464510.1	1.8e-11	50.67	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M002425	Bhi01M002425	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G002425	Cucumber (Gy14) v1	cgywgoB369
Bhi01G002425	Cucumber (Gy14) v2	cgybwgoB352
Bhi01G002425	Cucurbita maxima (Rimu)	cmawgoB0437
Bhi01G002425	Cucurbita maxima (Rimu)	cmawgoB0847
Bhi01G002425	Cucurbita moschata (Rifu)	cmowgoB0433
Bhi01G002425	Cucurbita moschata (Rifu)	cmowgoB0844
Bhi01G002425	Cucurbita pepo (Zucchini)	cpewgoB0294
Bhi01G002425	Cucurbita pepo (Zucchini)	cpewgoB0509
Bhi01G002425	Wild cucumber (PI 183967)	cpiwgoB367
Bhi01G002425	Wild cucumber (PI 183967)	cpiwgoB385
Bhi01G002425	Cucumber (Chinese Long) v3	cucwgoB370
Bhi01G002425	Cucumber (Chinese Long) v3	cucwgoB388
Bhi01G002425	Cucumber (Chinese Long) v2	cuwgoB365
Bhi01G002425	Cucumber (Chinese Long) v2	cuwgoB383
Bhi01G002425	Bottle gourd (USVL1VR-Ls)	lsiwgoB544
Bhi01G002425	Melon (DHL92) v3.6.1	medwgoB582
Bhi01G002425	Melon (DHL92) v3.5.1	mewgoB577
Bhi01G002425	Watermelon (Charleston Gray)	wcgwgoB572
Bhi01G002425	Watermelon (97103) v2	wgowmbB219
Bhi01G002425	Watermelon (97103) v1	wgowmB188
Bhi01G002425	Silver-seed gourd	carwgoB0053
Bhi01G002425	Silver-seed gourd	carwgoB0770