Bhi01G001978 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001978
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 62806379 .. 62806750 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATTGGACACACACTCAGTACGGAGGTAAGTGCCCTATCCACTGATGTAGTTAATCTATGTAAGTTTGTGGAGGGCGAGCTCCATGAACTTCATAAACAGCTCGATAACATTCGAGCCGAATGTCAAGAAAATCGTAAGGCTAGTAGTCAAAATGCTTCTACTAGTTCCCCATCCGCTGGGCATGTACATGGCACACATGGTTTGAAGGTGCCAAAGCCCGACATATACGATGGCACATGCAACGCCACAATGGTGGAAAATTTCTTGTTTGACCTAGAACAATACTTTGAAATCATTGGTGTCATCAACGATGGTGCCAAAACTACCAATGCACCAAACATCCTACGAGCAGCAGCCCAATTGTGA

mRNA sequence

ATGAAGATTGGACACACACTCAGTACGGAGGTAAGTGCCCTATCCACTGATGTAGTTAATCTATGTAAGTTTGTGGAGGGCGAGCTCCATGAACTTCATAAACAGCTCGATAACATTCGAGCCGAATGTCAAGAAAATCGTAAGGCTAGTAGTCAAAATGCTTCTACTAGTTCCCCATCCGCTGGGCATGTACATGGCACACATGGTTTGAAGGTGCCAAAGCCCGACATATACGATGGCACATGCAACGCCACAATGGTGGAAAATTTCTTGTTTGACCTAGAACAATACTTTGAAATCATTGGTGTCATCAACGATGGTGCCAAAACTACCAATGCACCAAACATCCTACGAGCAGCAGCCCAATTGTGA

Coding sequence (CDS)

ATGAAGATTGGACACACACTCAGTACGGAGGTAAGTGCCCTATCCACTGATGTAGTTAATCTATGTAAGTTTGTGGAGGGCGAGCTCCATGAACTTCATAAACAGCTCGATAACATTCGAGCCGAATGTCAAGAAAATCGTAAGGCTAGTAGTCAAAATGCTTCTACTAGTTCCCCATCCGCTGGGCATGTACATGGCACACATGGTTTGAAGGTGCCAAAGCCCGACATATACGATGGCACATGCAACGCCACAATGGTGGAAAATTTCTTGTTTGACCTAGAACAATACTTTGAAATCATTGGTGTCATCAACGATGGTGCCAAAACTACCAATGCACCAAACATCCTACGAGCAGCAGCCCAATTGTGA

Protein sequence

MKIGHTLSTEVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHGLKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL

Homology

[Close]

BLAST of Bhi01G001978 vs. TrEMBL
Match: tr|A0A2U1NEZ9|A0A2U1NEZ9_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA274570 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-20
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 10  EVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHG 69
           E+  +S D+++  KF+E E+ ++H+++D +  ECQ ++K S+   +    S G       
Sbjct: 26  EIDKMSEDLLSARKFLEDEVFKMHEKIDKVAKECQTHQKKSNDGGA----SGGQGTSFSP 85

Query: 70  LKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL 124
           LKVPKPD+Y+GT NAT+VENFLF LEQYFE +GV  D A+ +NAP  LR +AQL
Sbjct: 86  LKVPKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPTFLRESAQL 135

[Close]

BLAST of Bhi01G001978 vs. TrEMBL
Match: tr|A0A2U1PL38|A0A2U1PL38_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA095360 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-20
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 10  EVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHG 69
           E+  +S D+++  KF+E E+ ++H+++D +  ECQ ++K S+   +    S G       
Sbjct: 112 EIDKMSEDLLSARKFLEDEVFKMHEKIDKVAKECQTHQKKSNDGGA----SGGQGTSFSP 171

Query: 70  LKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL 124
           LKVPKPD+Y+GT NAT+VENFLF LEQYFE +GV  D A+ +NAP  LR +AQL
Sbjct: 172 LKVPKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPTFLRESAQL 221

[Close]

BLAST of Bhi01G001978 vs. TrEMBL
Match: tr|A0A2U1LHQ1|A0A2U1LHQ1_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA489850 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 14  LSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHGLKVP 73
           +S D+++  KF+E E+ ++H+++DN+  ECQ +RK S+   ++SS           LKV 
Sbjct: 1   MSEDLLSARKFLEDEVFKMHEKIDNVAKECQTHRKKSNDGGASSSQGTSF----SPLKVS 60

Query: 74  KPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL 124
           KPD+Y+GT NAT+VENFLF LEQYFE +GV  D A+ +NAP  LR + QL
Sbjct: 61  KPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPAFLRESVQL 106

[Close]

BLAST of Bhi01G001978 vs. TrEMBL
Match: tr|A0A1S3CE17|A0A1S3CE17_CUCME (uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 3   IGHTLSTEVSALSTDVVNLCKFVEGELHELH-------KQLDNIRAECQENRKASSQNAS 62
           +G T   E+  L++ V  L  FVEGELH LH        +LD +  EC+     S+  ++
Sbjct: 36  MGRTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPST 95

Query: 63  TSSPSAGHVHGTHGLKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPN 122
           ++ P+     GT  +KVPKPD+Y+G  NAT+V+NFLF LE+YF  +GV +D A+  +AP 
Sbjct: 96  STHPTTS---GTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEARINHAPT 155

Query: 123 ILRAAAQL 124
            LR AAQL
Sbjct: 156 FLRDAAQL 160

[Close]

BLAST of Bhi01G001978 vs. TrEMBL
Match: tr|A0A2U1NWJ0|A0A2U1NWJ0_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219830 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 3   IGHTLSTEVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAG 62
           +G     E+  ++ D+++  KF+E E+  +H+++DN   ECQ ++K ++  +++SS    
Sbjct: 105 MGQDFKKEIEKMTHDLLSARKFLEDEIFTMHEKIDNAIKECQNHQKKNNDGSTSSS---- 164

Query: 63  HVHGT--HGLKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAA 122
              GT    LKVPKPD+Y+GT NAT+VENFLF LEQYF+ +GV+ D  + TNAP    + 
Sbjct: 165 --QGTPFSPLKVPKPDMYNGTRNATLVENFLFGLEQYFKAMGVVEDAVRITNAPAFFYSE 220

[Close]

BLAST of Bhi01G001978 vs. NCBI nr
Match: PWA72092.1 (hypothetical protein CTI12_AA274570 [Artemisia annua])

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 10  EVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHG 69
           E+  +S D+++  KF+E E+ ++H+++D +  ECQ ++K S+   +    S G       
Sbjct: 26  EIDKMSEDLLSARKFLEDEVFKMHEKIDKVAKECQTHQKKSNDGGA----SGGQGTSFSP 85

Query: 70  LKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL 124
           LKVPKPD+Y+GT NAT+VENFLF LEQYFE +GV  D A+ +NAP  LR +AQL
Sbjct: 86  LKVPKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPTFLRESAQL 135

[Close]

BLAST of Bhi01G001978 vs. NCBI nr
Match: PWA86449.1 (hypothetical protein CTI12_AA095360 [Artemisia annua])

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 10  EVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHG 69
           E+  +S D+++  KF+E E+ ++H+++D +  ECQ ++K S+   +    S G       
Sbjct: 112 EIDKMSEDLLSARKFLEDEVFKMHEKIDKVAKECQTHQKKSNDGGA----SGGQGTSFSP 171

Query: 70  LKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL 124
           LKVPKPD+Y+GT NAT+VENFLF LEQYFE +GV  D A+ +NAP  LR +AQL
Sbjct: 172 LKVPKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPTFLRESAQL 221

[Close]

BLAST of Bhi01G001978 vs. NCBI nr
Match: PWA48529.1 (hypothetical protein CTI12_AA489850 [Artemisia annua])

HSP 1 Score: 103.6 bits (257), Expect = 4.9e-19
Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 14  LSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAGHVHGTHGLKVP 73
           +S D+++  KF+E E+ ++H+++DN+  ECQ +RK S+   ++SS           LKV 
Sbjct: 1   MSEDLLSARKFLEDEVFKMHEKIDNVAKECQTHRKKSNDGGASSSQGTSF----SPLKVS 60

Query: 74  KPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAAAQL 124
           KPD+Y+GT NAT+VENFLF LEQYFE +GV  D A+ +NAP  LR + QL
Sbjct: 61  KPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPAFLRESVQL 106

[Close]

BLAST of Bhi01G001978 vs. NCBI nr
Match: XP_008460615.1 (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 3   IGHTLSTEVSALSTDVVNLCKFVEGELHELH-------KQLDNIRAECQENRKASSQNAS 62
           +G T   E+  L++ V  L  FVEGELH LH        +LD +  EC+     S+  ++
Sbjct: 36  MGRTFQEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPST 95

Query: 63  TSSPSAGHVHGTHGLKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPN 122
           ++ P+     GT  +KVPKPD+Y+G  NAT+V+NFLF LE+YF  +GV +D A+  +AP 
Sbjct: 96  STHPTTS---GTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEARINHAPT 155

Query: 123 ILRAAAQL 124
            LR AAQL
Sbjct: 156 FLRDAAQL 160

[Close]

BLAST of Bhi01G001978 vs. NCBI nr
Match: PWA77883.1 (hypothetical protein CTI12_AA219830 [Artemisia annua])

HSP 1 Score: 99.8 bits (247), Expect = 7.1e-18
Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 3   IGHTLSTEVSALSTDVVNLCKFVEGELHELHKQLDNIRAECQENRKASSQNASTSSPSAG 62
           +G     E+  ++ D+++  KF+E E+  +H+++DN   ECQ ++K ++  +++SS    
Sbjct: 105 MGQDFKKEIEKMTHDLLSARKFLEDEIFTMHEKIDNAIKECQNHQKKNNDGSTSSS---- 164

Query: 63  HVHGT--HGLKVPKPDIYDGTCNATMVENFLFDLEQYFEIIGVINDGAKTTNAPNILRAA 122
              GT    LKVPKPD+Y+GT NAT+VENFLF LEQYF+ +GV+ D  + TNAP    + 
Sbjct: 165 --QGTPFSPLKVPKPDMYNGTRNATLVENFLFGLEQYFKAMGVVEDAVRITNAPAFFYSE 220

The following BLAST results are available for this feature:

BLAST of Bhi01G001978 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G001978 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001978 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2U1NEZ9\|A0A2U1NEZ9_ARTAN	3.8e-20	46.49	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA274570 PE=4 SV=1	[more]
tr\|A0A2U1PL38\|A0A2U1PL38_ARTAN	3.8e-20	46.49	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA095360 PE=4 SV=1	[more]
tr\|A0A2U1LHQ1\|A0A2U1LHQ1_ARTAN	3.2e-19	47.27	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA489850 PE=4 SV=1	[more]
tr\|A0A1S3CE17\|A0A1S3CE17_CUCME	1.6e-18	42.97	uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=...	[more]
tr\|A0A2U1NWJ0\|A0A2U1NWJ0_ARTAN	4.7e-18	40.98	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219830 PE=4 SV=1	[more]

BLAST of Bhi01G001978 vs. NCBI nr


Match Name	E-value	Identity	Description
PWA72092.1	5.8e-20	46.49	hypothetical protein CTI12_AA274570 [Artemisia annua]	[more]
PWA86449.1	5.8e-20	46.49	hypothetical protein CTI12_AA095360 [Artemisia annua]	[more]
PWA48529.1	4.9e-19	47.27	hypothetical protein CTI12_AA489850 [Artemisia annua]	[more]
XP_008460615.1	2.4e-18	42.97	PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo]	[more]
PWA77883.1	7.1e-18	40.98	hypothetical protein CTI12_AA219830 [Artemisia annua]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001978	Bhi01M001978	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..69

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001978	Cucumber (Gy14) v1	cgywgoB126
Bhi01G001978	Cucumber (Gy14) v1	cgywgoB244
Bhi01G001978	Cucumber (Gy14) v2	cgybwgoB361
Bhi01G001978	Cucumber (Gy14) v2	cgybwgoB461
Bhi01G001978	Cucurbita maxima (Rimu)	cmawgoB0440
Bhi01G001978	Cucurbita maxima (Rimu)	cmawgoB0854
Bhi01G001978	Cucurbita moschata (Rifu)	cmowgoB0438
Bhi01G001978	Cucurbita moschata (Rifu)	cmowgoB0723
Bhi01G001978	Cucurbita moschata (Rifu)	cmowgoB0851
Bhi01G001978	Cucurbita pepo (Zucchini)	cpewgoB0299
Bhi01G001978	Cucurbita pepo (Zucchini)	cpewgoB0519
Bhi01G001978	Wild cucumber (PI 183967)	cpiwgoB378
Bhi01G001978	Wild cucumber (PI 183967)	cpiwgoB488
Bhi01G001978	Cucumber (Chinese Long) v3	cucwgoB381
Bhi01G001978	Cucumber (Chinese Long) v3	cucwgoB497
Bhi01G001978	Cucumber (Chinese Long) v2	cuwgoB376
Bhi01G001978	Cucumber (Chinese Long) v2	cuwgoB485
Bhi01G001978	Bottle gourd (USVL1VR-Ls)	lsiwgoB555
Bhi01G001978	Melon (DHL92) v3.6.1	medwgoB038
Bhi01G001978	Melon (DHL92) v3.6.1	medwgoB573
Bhi01G001978	Melon (DHL92) v3.5.1	mewgoB568
Bhi01G001978	Watermelon (Charleston Gray)	wcgwgoB212
Bhi01G001978	Watermelon (Charleston Gray)	wcgwgoB575
Bhi01G001978	Watermelon (97103) v2	wgowmbB171
Bhi01G001978	Watermelon (97103) v2	wgowmbB172
Bhi01G001978	Watermelon (97103) v2	wgowmbB222
Bhi01G001978	Watermelon (97103) v1	wgowmB176
Bhi01G001978	Silver-seed gourd	carwgoB0460
Bhi01G001978	Silver-seed gourd	carwgoB0837
Bhi01G001978	Silver-seed gourd	carwgoB1020