Bhi01G001941 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001941
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Reverse transcriptase-like protein
Location	chr1 : 61676552 .. 61676836 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGATGTAGGCTACAATCCGTCCTACGTTTGGCGGAGCATTTTATGGGGTAGGTCTTTACATACCAAAGGAATTTTAAGGCGCATTGGTGATGGTAAAGACACTTTTGATTTTCGTCATCCTTGGATTCCTAGAGAAAGGAGCTTTAAACCAATTATCCCGATGCAATCTAATGTTGAAAATCTGAAAGTGGCGGATCTTATTGACGAAAAAAACAGTAGGAATTTGACTGAGATGAGAAAGATTTGTGGGAGGAGGATATTTCATCCTCAGTGGCTCTACTGA

mRNA sequence

GTTGATGTAGGCTACAATCCGTCCTACGTTTGGCGGAGCATTTTATGGGGTAGGTCTTTACATACCAAAGGAATTTTAAGGCGCATTGGTGATGGTAAAGACACTTTTGATTTTCGTCATCCTTGGATTCCTAGAGAAAGGAGCTTTAAACCAATTATCCCGATGCAATCTAATGTTGAAAATCTGAAAGTGGCGGATCTTATTGACGAAAAAAACAGTAGGAATTTGACTGAGATGAGAAAGATTTGTGGGAGGAGGATATTTCATCCTCAGTGGCTCTACTGA

Coding sequence (CDS)

GTTGATGTAGGCTACAATCCGTCCTACGTTTGGCGGAGCATTTTATGGGGTAGGTCTTTACATACCAAAGGAATTTTAAGGCGCATTGGTGATGGTAAAGACACTTTTGATTTTCGTCATCCTTGGATTCCTAGAGAAAGGAGCTTTAAACCAATTATCCCGATGCAATCTAATGTTGAAAATCTGAAAGTGGCGGATCTTATTGACGAAAAAAACAGTAGGAATTTGACTGAGATGAGAAAGATTTGTGGGAGGAGGATATTTCATCCTCAGTGGCTCTACTGA

Protein sequence

VDVGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPIIPMQSNVENLKVADLIDEKNSRNLTEMRKICGRRIFHPQWLY

Homology

[Close]

BLAST of Bhi01G001941 vs. TAIR10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 3   VGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPI 53
           VG  PSY WRSI+ GR L ++G+LR IGDG  T  +   WI  E    P+
Sbjct: 104 VGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

[Close]

BLAST of Bhi01G001941 vs. TAIR10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05
Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 3   VGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPI----IPMQ-- 62
           +G  PS+VW+SI   + +  +G    +G+G+D   +RH W+  + +   +    +P Q  
Sbjct: 103 LGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEY 162

Query: 63  -SNVENLKVADLIDE 71
            S    LKV+DLIDE
Sbjct: 163 ASVSSILKVSDLIDE 177

[Close]

BLAST of Bhi01G001941 vs. Swiss-Prot
Match: sp|P93295|M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-06
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 3   VGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPI 53
           VG  PSY WRSI+ GR L ++G+LR IGDG  T  +   WI  E    P+
Sbjct: 104 VGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

[Close]

BLAST of Bhi01G001941 vs. TrEMBL
Match: tr|A0A1J6KPF6|A0A1J6KPF6_NICAT (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_31322 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1   VDVGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPIIPMQSNVE 60
           V +    S+VW+SILWGR L ++G+   + +GK    +R PW+PR+ SF P+  M     
Sbjct: 155 VPISKYTSWVWKSILWGRDLLSRGVRWNVSNGKSVRVWRDPWLPRDNSFYPLSMMSGTAT 214

Query: 61  NLKVADLIDEKNSRNL 77
           N+KV++LID+  +  +
Sbjct: 215 NMKVSELIDDSTNHGI 230

[Close]

BLAST of Bhi01G001941 vs. TrEMBL
Match: tr|W9RQV7|W9RQV7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002345 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 3   VGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFK 51
           +G+NPSY WRSILWGR L   GI RR+G GK    FR PWIPR  SF+
Sbjct: 197 IGHNPSYTWRSILWGRELLKSGIRRRVGSGKSIQCFRDPWIPRPHSFQ 244

[Close]

BLAST of Bhi01G001941 vs. TrEMBL
Match: tr|J7G0Q7|J7G0Q7_ROSRU (Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.1e-10
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 2    DVGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPIIPMQSNVEN 61
            ++G +PSY+WRS LWGR L  KG+  RIGDGK+   F  PW+P   SF+PI+  Q     
Sbjct: 1186 ELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGLPSFRPIL-RQGAPLF 1245

Query: 62   LKVADLIDEKNSRNL 77
            L+V+DL+      N+
Sbjct: 1246 LRVSDLLHNNGGWNM 1259

[Close]

BLAST of Bhi01G001941 vs. TrEMBL
Match: tr|A0A1S3Y3T8|A0A1S3Y3T8_TOBAC (uncharacterized protein LOC107771940 OS=Nicotiana tabacum OX=4097 GN=LOC107771940 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 8   SYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKP-IIPMQSNVENLKVAD 67
           S++WRSILWGR L   G+  RI DGK+   + +PWIPR+  F P  I MQ+N++ LKV D
Sbjct: 144 SWIWRSILWGRDLLVTGLRWRISDGKNINVWPNPWIPRKNGFTPKSIQMQNNLD-LKVVD 203

Query: 68  LIDE 71
           LIDE
Sbjct: 204 LIDE 206

[Close]

BLAST of Bhi01G001941 vs. TrEMBL
Match: tr|A0A1S3Z252|A0A1S3Z252_TOBAC (uncharacterized protein LOC107782157 OS=Nicotiana tabacum OX=4097 GN=LOC107782157 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-09
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 8   SYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKP-IIPMQSNVENLKVAD 67
           S++WRSILWGR L   G+  RI +GK+   +  PWIPR+  F P  I MQ+N++ LKVAD
Sbjct: 70  SWIWRSILWGRDLLVTGLRWRISNGKNINVWTDPWIPRKNGFTPKSIQMQNNLD-LKVAD 129

Query: 68  LIDE 71
           LIDE
Sbjct: 130 LIDE 132

[Close]

BLAST of Bhi01G001941 vs. NCBI nr
Match: XP_024019719.1 (uncharacterized protein LOC112091106 [Morus notabilis])

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-12
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 1   VDVGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPW-------------IPRER 60
           V+VG+NPSY WRS+LWG+ L  KGI  ++G G++   FR PW             +PR  
Sbjct: 201 VEVGHNPSYTWRSLLWGKELLAKGIRWQVGSGRNVTVFRDPWMPPVAEPLEDDVRLPRPH 260

Query: 61  SFKPIIPMQSNVENLKVADLI 69
           SFKPI P    +E L V DLI
Sbjct: 261 SFKPITPCSEGMEELLVEDLI 281

[Close]

BLAST of Bhi01G001941 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3    VGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPIIPMQSNVENL 62
            VG NPS++WRSILWG  +  KG+  RIGDGK    ++  WIPR  +F+PI P     E +
Sbjct: 994  VGSNPSFIWRSILWGSQVIKKGVRWRIGDGKKVLVYKDKWIPRPATFQPISPKTLPHETV 1053

Query: 63   KVADLIDEKN 73
             VADLID +N
Sbjct: 1054 -VADLIDSEN 1062

[Close]

BLAST of Bhi01G001941 vs. NCBI nr
Match: OIT26744.1 (putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1   VDVGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPIIPMQSNVE 60
           V +    S+VW+SILWGR L ++G+   + +GK    +R PW+PR+ SF P+  M     
Sbjct: 155 VPISKYTSWVWKSILWGRDLLSRGVRWNVSNGKSVRVWRDPWLPRDNSFYPLSMMSGTAT 214

Query: 61  NLKVADLIDEKNSRNL 77
           N+KV++LID+  +  +
Sbjct: 215 NMKVSELIDDSTNHGI 230

[Close]

BLAST of Bhi01G001941 vs. NCBI nr
Match: XP_024948107.1 (uncharacterized protein LOC112495648 [Citrus sinensis])

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 4   GYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFKPIIPMQSNVENLK 63
           G NPS++WRSILWGR +  KG+  RIGDGK    ++  WIPR  +FKP  P    +++  
Sbjct: 51  GSNPSFIWRSILWGRQIINKGLRWRIGDGKSAKIYQSCWIPRPSTFKPFSPPNLPLDS-T 110

Query: 64  VADLIDEKN 73
           V++LID  N
Sbjct: 111 VSELIDANN 118

[Close]

BLAST of Bhi01G001941 vs. NCBI nr
Match: EXC04260.1 (hypothetical protein L484_002345 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 3   VGYNPSYVWRSILWGRSLHTKGILRRIGDGKDTFDFRHPWIPRERSFK 51
           +G+NPSY WRSILWGR L   GI RR+G GK    FR PWIPR  SF+
Sbjct: 197 IGHNPSYTWRSILWGRELLKSGIRRRVGSGKSIQCFRDPWIPRPHSFQ 244

The following BLAST results are available for this feature:

BLAST of Bhi01G001941 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00310.1	1.8e-07	48.00	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	2.9e-05	33.33	Ribonuclease H-like superfamily protein	[more]

BLAST of Bhi01G001941 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93295\|M310_ARATH	3.2e-06	48.00	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Bhi01G001941 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1J6KPF6\|A0A1J6KPF6_NICAT	2.7e-10	38.16	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_31322 PE...	[more]
tr\|W9RQV7\|W9RQV7_9ROSA	3.6e-10	62.50	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002345 PE=4 SV=1	[more]
tr\|J7G0Q7\|J7G0Q7_ROSRU	6.1e-10	45.33	Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1	[more]
tr\|A0A1S3Y3T8\|A0A1S3Y3T8_TOBAC	2.3e-09	54.69	uncharacterized protein LOC107771940 OS=Nicotiana tabacum OX=4097 GN=LOC10777194...	[more]
tr\|A0A1S3Z252\|A0A1S3Z252_TOBAC	4.0e-09	54.69	uncharacterized protein LOC107782157 OS=Nicotiana tabacum OX=4097 GN=LOC10778215...	[more]

BLAST of Bhi01G001941 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024019719.1	5.8e-12	45.68	uncharacterized protein LOC112091106 [Morus notabilis]	[more]
XP_006491472.1	2.2e-11	51.43	uncharacterized protein LOC102626455 [Citrus sinensis]	[more]
OIT26744.1	4.1e-10	38.16	putative mitochondrial protein [Nicotiana attenuata]	[more]
XP_024948107.1	5.4e-10	47.83	uncharacterized protein LOC112495648 [Citrus sinensis]	[more]
EXC04260.1	5.4e-10	62.50	hypothetical protein L484_002345 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001941	Bhi01M001941	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001941	Cucumber (Gy14) v1	cgywgoB000
Bhi01G001941	Cucumber (Gy14) v2	cgybwgoB361
Bhi01G001941	Cucurbita maxima (Rimu)	cmawgoB0432
Bhi01G001941	Cucurbita maxima (Rimu)	cmawgoB0846
Bhi01G001941	Cucurbita moschata (Rifu)	cmowgoB0428
Bhi01G001941	Cucurbita moschata (Rifu)	cmowgoB0843
Bhi01G001941	Cucurbita pepo (Zucchini)	cpewgoB0289
Bhi01G001941	Cucurbita pepo (Zucchini)	cpewgoB0511
Bhi01G001941	Cucurbita pepo (Zucchini)	cpewgoB0588
Bhi01G001941	Wild cucumber (PI 183967)	cpiwgoB378
Bhi01G001941	Cucumber (Chinese Long) v3	cucwgoB381
Bhi01G001941	Cucumber (Chinese Long) v3	cucwgoB440
Bhi01G001941	Cucumber (Chinese Long) v3	cucwgoB438
Bhi01G001941	Cucumber (Chinese Long) v3	cucwgoB439
Bhi01G001941	Cucumber (Chinese Long) v2	cuwgoB376
Bhi01G001941	Bottle gourd (USVL1VR-Ls)	lsiwgoB555
Bhi01G001941	Melon (DHL92) v3.6.1	medwgoB573
Bhi01G001941	Melon (DHL92) v3.5.1	mewgoB568
Bhi01G001941	Watermelon (Charleston Gray)	wcgwgoB560
Bhi01G001941	Watermelon (97103) v2	wgowmbB171
Bhi01G001941	Watermelon (97103) v2	wgowmbB207
Bhi01G001941	Watermelon (97103) v1	wgowmB180
Bhi01G001941	Watermelon (97103) v1	wgowmB230
Bhi01G001941	Silver-seed gourd	carwgoB1086
Bhi01G001941	Silver-seed gourd	carwgoB1193