Bhi01G001752 (gene) Wax gourd

Overview
NameBhi01G001752
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
Locationchr1 : 54721945 .. 54724392 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTGTATTTTCGACACGGAGAAACTGCAGAGTTAGGAAGTAATTTTGCTATTAATATTTTGGTTTTAAAAATTTGTTTATGAGATAAGTTTGATTCTTACTGTTGATTTTTGTTTGGTTAGAGAATGAAAATATAATTTGTGGACGAGGATGGTGCCGACGATTGATGTTGTCTTCTATGCATTAATTCCTCCTTCCAAACAATGTCCGCTTATTTTTTGAGTTAATGATTAATATTCAGTTCTTGTTTTTGTTCTTCTTCATTGTTGCAGGTAAACTATTCGAGGGAACTAGGAAATTCCACTTAATTATGTTTATTATTTTTTCTCTACACTCTCTTATGGATCTTGTTTGATTTCAAGATAACTATTAAAACAGGGAAGAAAACTCAACTTTCTTCCCCAACTTTCTAGAATAACAAAATGCTCTTTTATTCTCCCTTTTGGTGGTTATTTGATTTCAAGGATTTTAGTGGTGGAAGTGGAACTTAGACTTTAATGGTTTTTCATTAAGAAGATTAAAGTTTCACTTGAAACATTTTAATTTTTGTAATAATCTGGAACTTTGGTTCTTTCCAAAATTTTTGATACTTTCTATTCACTTTTTTGTTCATAATATTAATTATAAAGTTACATATGTAACATATTATGTATTTCTTTTCACCTCATTTTTTCGTATTTTGTGTTTGTCTGTAATGAATAATTGTAAATCCAAGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGGCCTCCCGCTGGGGTTTCACTTGAAACATTTTAATTTTTGTAACATATTTATCTTTTTTAAATGGTTTGTGCTTAATAGGGACTGATGCATTTCAAATAAAAGGGAAAGTGAATCTTGCTACATCTTTTGTATCATTGAAACTGAGCGAATTTCAGTTAGTAGGTTCCCGAAGACTCACTTAGAGAAGTTTTGCTATTATCAAGAATTGGGTTCAAATCTTTGTATTTAAGAGAAGATTTAAGTTTTGGATTGCCTTTTGAATTCTCCAAGTTATTGCATTGGGTATGAACTTTCAGACTGTATAATTTTTTTCTTCATAACTAATTTTTGTTTTTTTTGTGTAATTTTGTTTCTTTCTTTTTTTTCTAAGTTTTTCATGCTTGAATAAACAATATAGGTTGTAAGTATTTATTATTTTCTCATATGACCAAGTTATTGGATTACTTATTCCTTGTTTTGTTAATTTCATGGACCTAATTCAACATTGTTCAAAACTTTGTAAAATAGGTAGTTTGTCAATAATATGATGCTATTGTTCCATTGATACTGCACAAATTGATCATGTTTGCTTGTTTATATTTATATTTGCCCATTTTCTGTTGTTTTATTAAAGGTTTCGAGTGAACTCAAGTTTATTGTAGCTTGGGGTGAATTCAAGCTTATTGAACTTATTCGTCATTGTCCCATCACATAATGTCCTATGTAAGATTCTGAATTCGTAAACTGGTTAGTTTAAACCAGTCCTCACTTTTTGTGACATTGGAAGTTAAGTGCTTGTCTAATGGAATGGTTAGTTTATACTTATGGGAGGTAAAGCTTGATTAGTAATTTATTCTGTGACATTAAACTCTAGAATTCCTTATTTGTGGAAAACTATATTTGTCATCCCCCATTCCATTAATTGGCATATTCTTTGCTGTAGTATAAGATGATATGCTCATTGTTGAGGTTTTGAGCGGTAGACTGCTTAAGAAATGGCATGGTCATTATAACGTATGAAATTTTATCCTTTCCTCGTGTGTGTGTGTTTAGGCTTCGTAGAAATTCTTCTTACTAACATGTTTATTCCAGGGTATTTGATGATGGATGGCAAAGGGAAGGAAAACATTTTTATGATCATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCCAATGCTATCATAATCTCTTCCTCTGTGGATCCTACTTGTAAGGTTTGTGTTGAAACATGCTTCAGCTCGTTGGTTTTGTGTTGCTCTTTTGGTTTATATAGCATATCATTTATATTGGGAGGCTTGGAGGATTGCTGGCTAATAGTTAGCTTAAGTTGTTACTGTATAGATAAAATAGTAGGAAATTGTTATAATATGTCTAATTTTGATCTCTTTATACACCAATTTTTTCTAGAACAGTTTAGATTTTCTATAACAATAGGAGGAACACTGAGATTTAAAGAATTGAATATTGAGTGAAACTTGAAGTGATAATTAATCTCTTGGTACTTATACTTAGGTTGTAAGTGAAACTATTTGGCTATGATAAACTATATATAATCCATCATATGGAATGTTGAGATTTATGTATCCTTCTCATTTGATCTTGATTCTCGTCTTAGCATGTGTTATCACAAAGGTTGTTTTGCTGCCTCTTTCACCTTTCAATCTTCGAAGTAAACACTACCAAGAG

mRNA sequence

ATGAAGCTTGTATTTTCGACACGGAGAAACTGCAGAGTTAGGAAGGTATTTGATGATGGATGGCAAAGGGAAGGAAAACATTTTTATGATCATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCCAATGCTATCATAATCTCTTCCTCTGTGGATCCTACTTGTAAGCATGTGTTATCACAAAGGTTGTTTTGCTGCCTCTTTCACCTTTCAATCTTCGAAGTAAACACTACCAAGAG

Coding sequence (CDS)

ATGAAGCTTGTATTTTCGACACGGAGAAACTGCAGAGTTAGGAAGGTATTTGATGATGGATGGCAAAGGGAAGGAAAACATTTTTATGATCATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCCAATGCTATCATAATCTCTTCCTCTGTGGATCCTACTTGTAAGCATGTGTTATCACAAAGGTTGTTTTGCTGCCTCTTTCACCTTTCAATCTTCGAAGTAAACACTACCAAGAG

Protein sequence

MKLVFSTRRNCRVRKVFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCKHVLSQRLFCCLFHLSIFEVNTTK
Homology
[Close]
BLAST of Bhi01G001752 vs. TAIR10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-11
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 15  KVFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           ++FDD  +++G   Y+H+F  H + VTDIV+ YGG NA+IISSS D TCK
Sbjct: 151 RLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. Swiss-Prot
Match: sp|Q9M3B4|RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.9e-10
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 15  KVFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           ++FDD  +++G   Y+H+F  H + VTDIV+ YGG NA+IISSS D TCK
Sbjct: 151 RLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. TrEMBL
Match: tr|A0A1S3BU36|A0A1S3BU36_CUCME (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           VFDDGWQRE KH Y+HSFTGHNLPVTDIVVGYGG NAIIISSSVD TCK
Sbjct: 152 VFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. TrEMBL
Match: tr|A0A0A0KZT0|A0A0A0KZT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           VFDDGWQRE KH Y+HSFTGHNLPVTDIVVGYGG NAIIISSSVD TCK
Sbjct: 152 VFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. TrEMBL
Match: tr|A0A2J6L9Y5|A0A2J6L9Y5_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X115620 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           +FD+  Q+   H Y++SFTGH LPVTDIV GYGGSNAII+SSS+D TCK
Sbjct: 154 IFDEEGQQRVGHLYEYSFTGHALPVTDIVTGYGGSNAIILSSSLDRTCK 202

[Close]
BLAST of Bhi01G001752 vs. TrEMBL
Match: tr|A0A059BRY9|A0A059BRY9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02332 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           +FDD  ++E  H Y+HSFTGH L +TD+V+GYGGSNAII+S+S D TCK
Sbjct: 186 IFDDMRRQEATHLYEHSFTGHALRITDVVIGYGGSNAIIVSASEDRTCK 234

[Close]
BLAST of Bhi01G001752 vs. TrEMBL
Match: tr|A0A251RYM3|A0A251RYM3_HELAN (Putative transducin/WD40 repeat-like superfamily protein OS=Helianthus annuus OX=4232 GN=RID3 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           +FD+  Q+   H Y++SFT H LPVTDIV GYGGSNAII+S+S D TCK
Sbjct: 152 IFDEERQQRSGHLYEYSFTEHALPVTDIVTGYGGSNAIIVSASQDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. NCBI nr
Match: XP_022941447.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 15  KVFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           KVFDDGWQRE KH Y+HSFTGHNLPVTDIV+GYGGSNAIIISSSVD TCK
Sbjct: 151 KVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. NCBI nr
Match: XP_022982251.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 15  KVFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           KVFDDGWQRE KH Y+HSFTGHNLPVTDIV+GYGGSNAIIISSSVD TCK
Sbjct: 151 KVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. NCBI nr
Match: XP_023521513.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 15  KVFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           KVFDDGWQRE KH Y+HSFTGHNLPVTDIV+GYGGSNAII+SSSVD TCK
Sbjct: 151 KVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIVSSSVDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. NCBI nr
Match: XP_022151059.1 (protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia] >XP_022151066.1 protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-18
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           VFDDGWQRE KH Y+HSFTGHNLP+TDIVVGYGGSN+IIISSSVD TCK
Sbjct: 152 VFDDGWQREAKHLYEHSFTGHNLPITDIVVGYGGSNSIIISSSVDRTCK 200

[Close]
BLAST of Bhi01G001752 vs. NCBI nr
Match: XP_008452567.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 16  VFDDGWQREGKHFYDHSFTGHNLPVTDIVVGYGGSNAIIISSSVDPTCK 65
           VFDDGWQRE KH Y+HSFTGHNLPVTDIVVGYGG NAIIISSSVD TCK
Sbjct: 152 VFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCK 200

The following BLAST results are available for this feature:
BLAST of Bhi01G001752 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49180.15.5e-1154.00Transducin/WD40 repeat-like superfamily protein[more]
BLAST of Bhi01G001752 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M3B4|RID3_ARATH9.9e-1054.00Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1... [more]
BLAST of Bhi01G001752 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BU36|A0A1S3BU36_CUCME7.4e-1889.80protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4... [more]
tr|A0A0A0KZT0|A0A0A0KZT0_CUCSA7.4e-1889.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1[more]
tr|A0A2J6L9Y5|A0A2J6L9Y5_LACSA1.1e-1067.35Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X115620 PE=4 SV=1[more]
tr|A0A059BRY9|A0A059BRY9_EUCGR1.1e-1063.27Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02332 PE=4 SV... [more]
tr|A0A251RYM3|A0A251RYM3_HELAN2.1e-0963.27Putative transducin/WD40 repeat-like superfamily protein OS=Helianthus annuus OX... [more]
BLAST of Bhi01G001752 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941447.11.0e-1890.00protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata][more]
XP_022982251.11.0e-1890.00protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima][more]
XP_023521513.11.3e-1888.00protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo][more]
XP_022151059.16.5e-1887.76protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia] >XP_022151066.1 p... [more]
XP_008452567.11.1e-1789.80PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902184 negative regulation of shoot apical meristem development
biological_process GO:0030174 regulation of DNA-dependent DNA replication initiation
biological_process GO:0006364 rRNA processing
cellular_component GO:0005656 nuclear pre-replicative complex
cellular_component GO:0097344 Rix1 complex
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M001752Bhi01M001752mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi01G001752Cucumber (Gy14) v2cgybwgoB356
Bhi01G001752Cucurbita maxima (Rimu)cmawgoB0321
Bhi01G001752Cucurbita maxima (Rimu)cmawgoB0563
Bhi01G001752Cucurbita moschata (Rifu)cmowgoB0309
Bhi01G001752Cucurbita pepo (Zucchini)cpewgoB0674
Bhi01G001752Cucurbita pepo (Zucchini)cpewgoB0776
Bhi01G001752Wild cucumber (PI 183967)cpiwgoB371
Bhi01G001752Cucumber (Chinese Long) v3cucwgoB374
Bhi01G001752Cucumber (Chinese Long) v2cuwgoB369
Bhi01G001752Bottle gourd (USVL1VR-Ls)lsiwgoB556