Bhi01G001562 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001562
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 46264347 .. 46264913 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGTGTGGCTGCAAAGGTCAGTGGTTCTTCAACTTCCATGAAACCACCCAAGCCAATGATAGAGAAATTGAAGAAGGAAAAACCAGAGACGACGATGAAAAGATCGTTGGCAACCAAAACTACTCCATCGTCGGCGACCAACTTGAAAGATAATGATCGAGTGAGTACGCTGAAGAGTAGGTTTGCGAGTACCATCTTGAAAGCACAACAACAACTTTCCCAGAGTGAAGAAAGAGCAAGAGTAAGAACCACGTGCATTGTGGAGAAGAAACCTCTGACTCCGACTCCAATTTCGACTTTGACGGAAGAACCGAGAGTTGCCCACAAGGCTGTGTGGAGGAAGAAGAAACCTCCGATGACTCCGGCTACAACTACAACTGCGATTGAAGAACTGAGAAAAGTTGCTCGAGAATCTTTAGAGGAGTTGGAGCGGAGTGTCGAGGTTGAAGACAACCACAAATCAGTGAAGGATTTGGAGCGCCTTTGCGGTTGGCCGATTCCCTATGTTGGTGGTTTTAAGAACAGGATGGAGTATTATGGTTTATATTTGAAGAATTATTAG

mRNA sequence

ATGAAGAGTGTGGCTGCAAAGGTCAGTGGTTCTTCAACTTCCATGAAACCACCCAAGCCAATGATAGAGAAATTGAAGAAGGAAAAACCAGAGACGACGATGAAAAGATCGTTGGCAACCAAAACTACTCCATCGTCGGCGACCAACTTGAAAGATAATGATCGAGTGAGTACGCTGAAGAGTAGGTTTGCGAGTACCATCTTGAAAGCACAACAACAACTTTCCCAGAGTGAAGAAAGAGCAAGAGTAAGAACCACGTGCATTGTGGAGAAGAAACCTCTGACTCCGACTCCAATTTCGACTTTGACGGAAGAACCGAGAGTTGCCCACAAGGCTGTGTGGAGGAAGAAGAAACCTCCGATGACTCCGGCTACAACTACAACTGCGATTGAAGAACTGAGAAAAGTTGCTCGAGAATCTTTAGAGGAGTTGGAGCGGAGTGTCGAGGTTGAAGACAACCACAAATCAGTGAAGGATTTGGAGCGCCTTTGCGGTTGGCCGATTCCCTATGTTGGTGGTTTTAAGAACAGGATGGAGTATTATGGTTTATATTTGAAGAATTATTAG

Coding sequence (CDS)

ATGAAGAGTGTGGCTGCAAAGGTCAGTGGTTCTTCAACTTCCATGAAACCACCCAAGCCAATGATAGAGAAATTGAAGAAGGAAAAACCAGAGACGACGATGAAAAGATCGTTGGCAACCAAAACTACTCCATCGTCGGCGACCAACTTGAAAGATAATGATCGAGTGAGTACGCTGAAGAGTAGGTTTGCGAGTACCATCTTGAAAGCACAACAACAACTTTCCCAGAGTGAAGAAAGAGCAAGAGTAAGAACCACGTGCATTGTGGAGAAGAAACCTCTGACTCCGACTCCAATTTCGACTTTGACGGAAGAACCGAGAGTTGCCCACAAGGCTGTGTGGAGGAAGAAGAAACCTCCGATGACTCCGGCTACAACTACAACTGCGATTGAAGAACTGAGAAAAGTTGCTCGAGAATCTTTAGAGGAGTTGGAGCGGAGTGTCGAGGTTGAAGACAACCACAAATCAGTGAAGGATTTGGAGCGCCTTTGCGGTTGGCCGATTCCCTATGTTGGTGGTTTTAAGAACAGGATGGAGTATTATGGTTTATATTTGAAGAATTATTAG

Protein sequence

MKSVAAKVSGSSTSMKPPKPMIEKLKKEKPETTMKRSLATKTTPSSATNLKDNDRVSTLKSRFASTILKAQQQLSQSEERARVRTTCIVEKKPLTPTPISTLTEEPRVAHKAVWRKKKPPMTPATTTTAIEELRKVARESLEELERSVEVEDNHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY

Homology

[Close]

BLAST of Bhi01G001562 vs. TrEMBL
Match: tr|A0A0A0KGL2|A0A0A0KGL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.7e-32
Identity = 105/220 (47.73%), Postives = 124/220 (56.36%), Query Frame = 0


Query: 8   VSGSSTSMKPPK----PMIEKLKKEKPETTMKRSLATKTTPSSATNLKDND-RVSTLKSR 67
           V  SSTS+KP K     ++++ KK KP  TM      +TTP +A    D   RVS LKSR
Sbjct: 8   VCNSSTSIKPLKVKVTTIMKQPKKAKPTPTM------ETTPLTAITFDDKHYRVSMLKSR 67

Query: 68  FASTILKAQQQLSQSEERARVRTTCIVEKKPLTP--TPISTLTEEPR------------- 127
           FASTILKAQQQLS+S+     R  C VEKKP TP  TP+    E  R             
Sbjct: 68  FASTILKAQQQLSESK-----RKVCNVEKKPPTPALTPMEERREATREASWRNXXXXXXX 127

Query: 128 -------------------VAHKAVWRKXXXXXXXXXXXXXXXXLRKVARESLEELERSV 187
                              V  +A+WRK                +R+ AR++LE+LERSV
Sbjct: 128 XXXXXXXXXXXXXXXXTREVVQRALWRK--MKLPPTPILTSTEEIRRAARQALEDLERSV 187

Query: 188 EVEDNHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY 189
           +VED+HKSVKDLERLCGWPIP VGGFKNRMEYYGLYLKNY
Sbjct: 188 DVEDSHKSVKDLERLCGWPIPSVGGFKNRMEYYGLYLKNY 214

[Close]

BLAST of Bhi01G001562 vs. NCBI nr
Match: KGN47979.1 (hypothetical protein Csa_6G421730 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 105/220 (47.73%), Postives = 124/220 (56.36%), Query Frame = 0


Query: 8   VSGSSTSMKPPK----PMIEKLKKEKPETTMKRSLATKTTPSSATNLKDND-RVSTLKSR 67
           V  SSTS+KP K     ++++ KK KP  TM      +TTP +A    D   RVS LKSR
Sbjct: 8   VCNSSTSIKPLKVKVTTIMKQPKKAKPTPTM------ETTPLTAITFDDKHYRVSMLKSR 67

Query: 68  FASTILKAQQQLSQSEERARVRTTCIVEKKPLTP--TPISTLTEEPR------------- 127
           FASTILKAQQQLS+S+     R  C VEKKP TP  TP+    E  R             
Sbjct: 68  FASTILKAQQQLSESK-----RKVCNVEKKPPTPALTPMEERREATREASWRNXXXXXXX 127

Query: 128 -------------------VAHKAVWRKXXXXXXXXXXXXXXXXLRKVARESLEELERSV 187
                              V  +A+WRK                +R+ AR++LE+LERSV
Sbjct: 128 XXXXXXXXXXXXXXXXTREVVQRALWRK--MKLPPTPILTSTEEIRRAARQALEDLERSV 187

Query: 188 EVEDNHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY 189
           +VED+HKSVKDLERLCGWPIP VGGFKNRMEYYGLYLKNY
Sbjct: 188 DVEDSHKSVKDLERLCGWPIPSVGGFKNRMEYYGLYLKNY 214

The following BLAST results are available for this feature:

BLAST of Bhi01G001562 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G001562 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001562 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGL2\|A0A0A0KGL2_CUCSA	8.7e-32	47.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1	[more]

BLAST of Bhi01G001562 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47979.1	1.3e-31	47.73	hypothetical protein Csa_6G421730 [Cucumis sativus]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001562	Bhi01M001562	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..35

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001562	Melon (DHL92) v3.6.1	medwgoB544
Bhi01G001562	Melon (DHL92) v3.5.1	mewgoB532
Bhi01G001562	Watermelon (Charleston Gray)	wcgwgoB429
Bhi01G001562	Watermelon (97103) v2	wgowmbB181
Bhi01G001562	Silver-seed gourd	carwgoB0453
Bhi01G001562	Silver-seed gourd	carwgoB0526
Bhi01G001562	Cucumber (Gy14) v1	cgywgoB301
Bhi01G001562	Cucumber (Gy14) v2	cgybwgoB273
Bhi01G001562	Cucurbita maxima (Rimu)	cmawgoB0108
Bhi01G001562	Cucurbita maxima (Rimu)	cmawgoB0317
Bhi01G001562	Cucurbita moschata (Rifu)	cmowgoB0105
Bhi01G001562	Cucurbita moschata (Rifu)	cmowgoB0305
Bhi01G001562	Cucurbita pepo (Zucchini)	cpewgoB0772
Bhi01G001562	Cucurbita pepo (Zucchini)	cpewgoB0843
Bhi01G001562	Wild cucumber (PI 183967)	cpiwgoB285
Bhi01G001562	Cucumber (Chinese Long) v3	cucwgoB289
Bhi01G001562	Cucumber (Chinese Long) v2	cuwgoB285
Bhi01G001562	Bottle gourd (USVL1VR-Ls)	lsiwgoB436