Bhi01G001328 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001328
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 38039310 .. 38039543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGAAAATTGAGTTTGAATCTAATTTCGAATCGAAAATCTCGAATCTCAACGTTCAAGAAGAGGAATAAAAGTTTGATGAAGAAGGCTTATGAGCTCTCACACTTTGCAATGTTCAAACATGCGTTCTCATCCATGGCCCTACTTCTTCGCCGACTGAAGATCCTTCCCAATCCGCCCTGGAATTTCATACTTGGCCTATCAATTGCATTGACCTTGAAGCTATGA

mRNA sequence

ATGGGAAGAGGAAAATTGAGTTTGAATCTAATTTCGAATCGAAAATCTCGAATCTCAACGTTCAAGAAGAGGAATAAAAGTTTGATGAAGAAGGCTTATGAGCTCTCACACTTTGCAATGTTCAAACATGCGTTCTCATCCATGGCCCTACTTCTTCGCCGACTGAAGATCCTTCCCAATCCGCCCTGGAATTTCATACTTGGCCTATCAATTGCATTGACCTTGAAGCTATGA

Coding sequence (CDS)

ATGGGAAGAGGAAAATTGAGTTTGAATCTAATTTCGAATCGAAAATCTCGAATCTCAACGTTCAAGAAGAGGAATAAAAGTTTGATGAAGAAGGCTTATGAGCTCTCACACTTTGCAATGTTCAAACATGCGTTCTCATCCATGGCCCTACTTCTTCGCCGACTGAAGATCCTTCCCAATCCGCCCTGGAATTTCATACTTGGCCTATCAATTGCATTGACCTTGAAGCTATGA

Protein sequence

MGRGKLSLNLISNRKSRISTFKKRNKSLMKKAYELSHFAMFKHAFSSMALLLRRLKILPNPPWNFILGLSIALTLKL

Homology

[Close]

BLAST of Bhi01G001328 vs. NCBI nr
Match: XP_022143403.1 (uncharacterized protein LOC111013282 [Momordica charantia])

HSP 1 Score: 53.1 bits (126), Expect = 4.7e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGRGKLSLNLISNRKSRISTFKKRNKSLMKKAYELS 37
          MGRGKLSL LIS+ KSR +TF+KR KSLMKKA+ELS
Sbjct: 1  MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELS 36

[Close]

BLAST of Bhi01G001328 vs. NCBI nr
Match: XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MGRGKLSLNLISNRKSRISTFKKRNKSLMKKAYELS 37
          M RGKLS NLI NRKSR STFK+R  SLMKKAYELS
Sbjct: 1  MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELS 36

[Close]

BLAST of Bhi01G001328 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MGRGKLSLNLISNRKSRISTFKKRNKSLMKKAYELS 37
          M RGKLS NLI NRKSR STFK+R  SLMKKAYELS
Sbjct: 1  MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELS 36

[Close]

BLAST of Bhi01G001328 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MGRGKLSLNLISNRKSRISTFKKRNKSLMKKAYELS 37
          M RGKLS NLI NRKSR STFK+R  SLMKKAYELS
Sbjct: 1  MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELS 36

[Close]

BLAST of Bhi01G001328 vs. NCBI nr
Match: XP_022934582.1 (agamous-like MADS-box protein AGL6 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 8.1e-04
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MGRGKLSLNLISNRKSRISTFKKRNKSLMKKAYELS 37
          MGRG LSL LISN KSR +TF+KR KSLMKKAYELS
Sbjct: 1  MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELS 36

The following BLAST results are available for this feature:

BLAST of Bhi01G001328 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G001328 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001328 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Bhi01G001328 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143403.1	4.7e-04	77.78	uncharacterized protein LOC111013282 [Momordica charantia]	[more]
XP_022935361.1	6.2e-04	80.56	agamous-like MADS-box protein AGL14 [Cucurbita moschata]	[more]
XP_022983430.1	6.2e-04	80.56	agamous-like MADS-box protein AGL14 [Cucurbita maxima]	[more]
XP_023528957.1	6.2e-04	80.56	agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo]	[more]
XP_022934582.1	8.1e-04	80.56	agamous-like MADS-box protein AGL6 [Cucurbita moschata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036879	TF_MADSbox_sf
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001328	Bhi01M001328	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 57.84 coord: 3..23 score: 40.56
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..44 e-value: 0.0027 score: 18.4
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..36 e-value: 1.4E-8 score: 33.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..36 score: 13.876
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	G3DSA:3.40.1810.10		coord: 13..42 e-value: 1.5E-5 score: 26.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	SSF55455	SRF-like	coord: 1..38

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001328	Cucumber (Chinese Long) v2	cuwgoB283
Bhi01G001328	Bottle gourd (USVL1VR-Ls)	lsiwgoB431
Bhi01G001328	Melon (DHL92) v3.6.1	medwgoB531
Bhi01G001328	Melon (DHL92) v3.5.1	mewgoB530
Bhi01G001328	Watermelon (Charleston Gray)	wcgwgoB427
Bhi01G001328	Watermelon (97103) v2	wgowmbB179
Bhi01G001328	Watermelon (97103) v1	wgowmB202
Bhi01G001328	Silver-seed gourd	carwgoB0227
Bhi01G001328	Silver-seed gourd	carwgoB0895
Bhi01G001328	Cucumber (Gy14) v1	cgywgoB171
Bhi01G001328	Cucumber (Gy14) v2	cgybwgoB271
Bhi01G001328	Cucurbita maxima (Rimu)	cmawgoB0333
Bhi01G001328	Cucurbita maxima (Rimu)	cmawgoB0559
Bhi01G001328	Cucurbita moschata (Rifu)	cmowgoB0556
Bhi01G001328	Cucurbita moschata (Rifu)	cmowgoB0322
Bhi01G001328	Cucurbita pepo (Zucchini)	cpewgoB0681
Bhi01G001328	Cucurbita pepo (Zucchini)	cpewgoB0786
Bhi01G001328	Wild cucumber (PI 183967)	cpiwgoB283
Bhi01G001328	Cucumber (Chinese Long) v3	cucwgoB287