Bhi01G001007 (gene) Wax gourd

Overview
NameBhi01G001007
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionPentatricopeptide repeat-containing protein
Locationchr1 : 27712792 .. 27713148 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAAAGAAATACCTTCACTTGGAATGCCCTGTTATGCGGTCTGGCAATGCATGGACTTGTGCATGAAGCATTAAATCTTTTTGAAGTAATGATAATATATGGTGTCAAGCCTAATGAGGTAATGTTTCTAGCGATTACAACAGCTTGCTGCCGTTCTGGTATGGTCAACGAAGGGCGCAAGTATTGTAACAATATGAATAGTCAACTTTACAATTTGTTGCCAAAGTTGGAGCATCGTGGATGCATGATTGATTTGTTCTGTCGAGCTGGACTCTTGGAGGAAGTTATGGAGTTGGCAAGGACCGTGGCAATGAAGCCAGACCAGATGTGCTTATCTTGGGAGTGCTACTAG

mRNA sequence

ATGCCTCAAAGAAATACCTTCACTTGGAATGCCCTGTTATGCGGTCTGGCAATGCATGGACTTGTGCATGAAGCATTAAATCTTTTTGAAGTAATGATAATATATGGTGTCAAGCCTAATGAGGTAATGTTTCTAGCGATTACAACAGCTTGCTGCCGTTCTGGTATGGTCAACGAAGGGCGCAAGTATTGTAACAATATGAATAGTCAACTTTACAATTTGTTGCCAAAGTTGGAGCATCGTGGATGCATGATTGATTTGTTCTGTCGAGCTGGACTCTTGGAGGAAGTTATGGAGTTGGCAAGGACCGTGGCAATGAAGCCAGACCAGATGTGCTTATCTTGGGAGTGCTACTAG

Coding sequence (CDS)

ATGCCTCAAAGAAATACCTTCACTTGGAATGCCCTGTTATGCGGTCTGGCAATGCATGGACTTGTGCATGAAGCATTAAATCTTTTTGAAGTAATGATAATATATGGTGTCAAGCCTAATGAGGTAATGTTTCTAGCGATTACAACAGCTTGCTGCCGTTCTGGTATGGTCAACGAAGGGCGCAAGTATTGTAACAATATGAATAGTCAACTTTACAATTTGTTGCCAAAGTTGGAGCATCGTGGATGCATGATTGATTTGTTCTGTCGAGCTGGACTCTTGGAGGAAGTTATGGAGTTGGCAAGGACCGTGGCAATGAAGCCAGACCAGATGTGCTTATCTTGGGAGTGCTACTAG

Protein sequence

MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEGRKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPDQMCLSWECY
Homology
[Close]
BLAST of Bhi01G001007 vs. TAIR10
Match: AT4G38010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.0e-32
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 4   RNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEGRKY 63
           +N FTWNALL GLA+HG   E+L  FE M+  G KPN V FLA   ACC +G+V+EGR+Y
Sbjct: 370 KNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRY 429

Query: 64  CNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
            + M S+ YNL PKLEH GCMIDL CRAGLL+E +EL + + +KPD
Sbjct: 430 FHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPD 475

[Close]
BLAST of Bhi01G001007 vs. TAIR10
Match: AT5G13270.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 103.6 bits (257), Expect = 8.5e-23
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M   +   W A + G A +G   EAL LFE M+  G+KPN V F+A+ TAC  +G+V +G
Sbjct: 448 MDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQG 507

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPDQMCLSWECY 119
            K+C +   + YN+ P ++H  CMID++ R+GLL+E ++  + +  +PD M  SW+C+
Sbjct: 508 -KHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAM--SWKCF 562

[Close]
BLAST of Bhi01G001007 vs. TAIR10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-22
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M +R+  +WN +L G  +HGL  EAL+LF  M   GV P+EV  LAI +AC  SG+V+EG
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEG 529

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           ++  N+M+   +N++P+++H  CM DL  RAG L+E  +    +  +PD
Sbjct: 530 KQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPD 578

[Close]
BLAST of Bhi01G001007 vs. TAIR10
Match: AT4G19191.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 9.4e-22
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 2   PQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEGR 61
           P++   TW  ++ G A++G+  EAL LF  MI    KPN + FLA+  AC  SG + +G 
Sbjct: 420 PEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479

Query: 62  KYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           +Y + M  Q+YN+ P L+H  CM+DL  R G LEE +EL R ++ KPD
Sbjct: 480 EYFHIM-KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPD 526

[Close]
BLAST of Bhi01G001007 vs. TAIR10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-21
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MP+RN  +W++++  L+MHG   +AL+LF  M    V+PNEV F+ +   C  SG+V EG
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTV 105
           +K   +M  + YN+ PKLEH GCM+DLF RA LL E +E+  ++
Sbjct: 465 KKIFASMTDE-YNITPKLEHYGCMVDLFGRANLLREALEVIESM 507

[Close]
BLAST of Bhi01G001007 vs. Swiss-Prot
Match: sp|Q9SZK1|PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-31
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 4   RNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEGRKY 63
           +N FTWNALL GLA+HG   E+L  FE M+  G KPN V FLA   ACC +G+V+EGR+Y
Sbjct: 370 KNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRY 429

Query: 64  CNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
            + M S+ YNL PKLEH GCMIDL CRAGLL+E +EL + + +KPD
Sbjct: 430 FHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPD 475

[Close]
BLAST of Bhi01G001007 vs. Swiss-Prot
Match: sp|Q9LYU9|PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M   +   W A + G A +G   EAL LFE M+  G+KPN V F+A+ TAC  +G+V +G
Sbjct: 448 MDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQG 507

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPDQMCLSWECY 119
            K+C +   + YN+ P ++H  CMID++ R+GLL+E ++  + +  +PD M  SW+C+
Sbjct: 508 -KHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAM--SWKCF 562

[Close]
BLAST of Bhi01G001007 vs. Swiss-Prot
Match: sp|Q9LUS3|PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-21
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M +R+  +WN +L G  +HGL  EAL+LF  M   GV P+EV  LAI +AC  SG+V+EG
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEG 529

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           ++  N+M+   +N++P+++H  CM DL  RAG L+E  +    +  +PD
Sbjct: 530 KQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPD 578

[Close]
BLAST of Bhi01G001007 vs. Swiss-Prot
Match: sp|P0C8Q2|PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 2   PQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEGR 61
           P++   TW  ++ G A++G+  EAL LF  MI    KPN + FLA+  AC  SG + +G 
Sbjct: 420 PEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479

Query: 62  KYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           +Y + M  Q+YN+ P L+H  CM+DL  R G LEE +EL R ++ KPD
Sbjct: 480 EYFHIM-KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPD 526

[Close]
BLAST of Bhi01G001007 vs. Swiss-Prot
Match: sp|O23337|PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MP+RN  +W++++  L+MHG   +AL+LF  M    V+PNEV F+ +   C  SG+V EG
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTV 105
           +K   +M  + YN+ PKLEH GCM+DLF RA LL E +E+  ++
Sbjct: 465 KKIFASMTDE-YNITPKLEHYGCMVDLFGRANLLREALEVIESM 507

[Close]
BLAST of Bhi01G001007 vs. TrEMBL
Match: tr|A0A0A0LF19|A0A0A0LF19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004700 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.3e-45
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M QRNTFTWNALLCGLAMHGLVHEALNLFEVMII GVKPNE+ FLAI TACC  G+V+EG
Sbjct: 364 MSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 423

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY +NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD
Sbjct: 424 RKYFDNM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPD 471

[Close]
BLAST of Bhi01G001007 vs. TrEMBL
Match: tr|A0A1S3C7P6|A0A1S3C7P6_CUCME (pentatricopeptide repeat-containing protein At4g38010 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497763 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.6e-45
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MPQRNTFTWNALLCGLAMHGLVHEAL+LFEVM I GV+PNE+ FLAI TACC SG+V+EG
Sbjct: 364 MPQRNTFTWNALLCGLAMHGLVHEALDLFEVMTISGVEPNEITFLAILTACCHSGLVDEG 423

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPDQM 112
           RKY  NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD +
Sbjct: 424 RKYFENM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDML 473

[Close]
BLAST of Bhi01G001007 vs. TrEMBL
Match: tr|A0A1S3C7K9|A0A1S3C7K9_CUCME (pentatricopeptide repeat-containing protein At4g38010 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497763 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.6e-45
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MPQRNTFTWNALLCGLAMHGLVHEAL+LFEVM I GV+PNE+ FLAI TACC SG+V+EG
Sbjct: 246 MPQRNTFTWNALLCGLAMHGLVHEALDLFEVMTISGVEPNEITFLAILTACCHSGLVDEG 305

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPDQM 112
           RKY  NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD +
Sbjct: 306 RKYFENM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDML 355

[Close]
BLAST of Bhi01G001007 vs. TrEMBL
Match: tr|A0A1S3V6C7|A0A1S3V6C7_VIGRR (pentatricopeptide repeat-containing protein At4g38010 OS=Vigna radiata var. radiata OX=3916 GN=LOC106772063 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-33
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MP RN  TWNA + GLA++GL  EAL LFE +I+ G KPNEV FLA+ TACC SG+V+EG
Sbjct: 369 MPSRNIRTWNAYIGGLAINGLGREALKLFEDLIVSGAKPNEVTFLAVLTACCHSGLVSEG 428

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY N M+S LYNL P LEH GCM+DL CRAGL+EE +EL +T+ M PD
Sbjct: 429 RKYFNEMSSPLYNLSPWLEHYGCMVDLLCRAGLVEEAVELIKTMPMSPD 477

[Close]
BLAST of Bhi01G001007 vs. TrEMBL
Match: tr|A0A0S3SMV5|A0A0S3SMV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G074400 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.9e-33
Identity = 69/109 (63.30%), Postives = 85/109 (77.98%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MP RN  TWNA + GLA++GL  EAL LF+ +I+ G KPNEV FLA+ TACC SG+V+EG
Sbjct: 369 MPSRNIRTWNAYIGGLAINGLGREALKLFKDLIVSGAKPNEVTFLAVLTACCHSGLVSEG 428

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY N M+S LYNL P LEH GCM+DL CRAGL+EE +EL +T++M PD
Sbjct: 429 RKYFNEMSSPLYNLSPWLEHYGCMVDLLCRAGLVEEAVELIKTMSMSPD 477

[Close]
BLAST of Bhi01G001007 vs. NCBI nr
Match: XP_022141237.1 (pentatricopeptide repeat-containing protein At4g38010 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MPQRNTFTWNALLCGLAMHGLVH+ALNLFEVMI+ GVKPNEV FLAI TACC SG+V+EG
Sbjct: 364 MPQRNTFTWNALLCGLAMHGLVHKALNLFEVMIMSGVKPNEVTFLAILTACCHSGLVDEG 423

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY N ++S+LYNL PKLEH GCMIDLFCRAGLLEE +ELART+ MKPD
Sbjct: 424 RKYWNKVSSKLYNLSPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPD 472

[Close]
BLAST of Bhi01G001007 vs. NCBI nr
Match: KGN60620.1 (hypothetical protein Csa_2G004700 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M QRNTFTWNALLCGLAMHGLVHEALNLFEVMII GVKPNE+ FLAI TACC  G+V+EG
Sbjct: 364 MSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 423

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY +NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD
Sbjct: 424 RKYFDNM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPD 471

[Close]
BLAST of Bhi01G001007 vs. NCBI nr
Match: XP_011648657.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M QRNTFTWNALLCGLAMHGLVHEALNLFEVMII GVKPNE+ FLAI TACC  G+V+EG
Sbjct: 327 MSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 386

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY +NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD
Sbjct: 387 RKYFDNM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPD 434

[Close]
BLAST of Bhi01G001007 vs. NCBI nr
Match: XP_011648658.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           M QRNTFTWNALLCGLAMHGLVHEALNLFEVMII GVKPNE+ FLAI TACC  G+V+EG
Sbjct: 246 MSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 305

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPD 110
           RKY +NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD
Sbjct: 306 RKYFDNM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPD 353

[Close]
BLAST of Bhi01G001007 vs. NCBI nr
Match: XP_008458315.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MPQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIYGVKPNEVMFLAITTACCRSGMVNEG 60
           MPQRNTFTWNALLCGLAMHGLVHEAL+LFEVM I GV+PNE+ FLAI TACC SG+V+EG
Sbjct: 364 MPQRNTFTWNALLCGLAMHGLVHEALDLFEVMTISGVEPNEITFLAILTACCHSGLVDEG 423

Query: 61  RKYCNNMNSQLYNLLPKLEHRGCMIDLFCRAGLLEEVMELARTVAMKPDQM 112
           RKY  NM S+LYNLLPKLEH GCMIDLFCRAGLLEE +ELART+ MKPD +
Sbjct: 424 RKYFENM-SKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDML 473

The following BLAST results are available for this feature:
BLAST of Bhi01G001007 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38010.12.0e-3259.43Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G13270.18.5e-2339.83Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G16610.15.5e-2242.20pentatricopeptide (PPR) repeat-containing protein[more]
AT4G19191.19.4e-2243.52Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G14820.11.2e-2145.19Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Bhi01G001007 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SZK1|PP355_ARATH3.6e-3159.43Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX... [more]
sp|Q9LYU9|PP378_ARATH1.5e-2139.83Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidop... [more]
sp|Q9LUS3|PP237_ARATH9.9e-2142.20Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX... [more]
sp|P0C8Q2|PP323_ARATH1.7e-2043.52Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
sp|O23337|PP311_ARATH2.2e-2045.19Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... [more]
BLAST of Bhi01G001007 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LF19|A0A0A0LF19_CUCSA7.3e-4583.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004700 PE=4 SV=1[more]
tr|A0A1S3C7P6|A0A1S3C7P6_CUCME9.6e-4581.08pentatricopeptide repeat-containing protein At4g38010 isoform X1 OS=Cucumis melo... [more]
tr|A0A1S3C7K9|A0A1S3C7K9_CUCME9.6e-4581.08pentatricopeptide repeat-containing protein At4g38010 isoform X2 OS=Cucumis melo... [more]
tr|A0A1S3V6C7|A0A1S3V6C7_VIGRR2.9e-3364.22pentatricopeptide repeat-containing protein At4g38010 OS=Vigna radiata var. radi... [more]
tr|A0A0S3SMV5|A0A0S3SMV5_PHAAN4.9e-3363.30Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G... [more]
BLAST of Bhi01G001007 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141237.11.0e-4582.57pentatricopeptide repeat-containing protein At4g38010 [Momordica charantia][more]
KGN60620.11.1e-4483.49hypothetical protein Csa_2G004700 [Cucumis sativus][more]
XP_011648657.11.1e-4483.49PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cuc... [more]
XP_011648658.11.1e-4483.49PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cuc... [more]
XP_008458315.11.4e-4481.08PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cuc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M001007Bhi01M001007mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..116
e-value: 3.3E-21
score: 78.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 7..41
e-value: 3.7E-8
score: 31.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 5..53
e-value: 1.0E-9
score: 38.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 83..100
e-value: 0.01
score: 15.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..70
score: 6.895
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 11.772
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 77..107
score: 5.36
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..112
NoneNo IPR availablePANTHERPTHR24015:SF266SUBFAMILY NOT NAMEDcoord: 3..112

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi01G001007Cucumber (Gy14) v1cgywgoB516
Bhi01G001007Cucumber (Gy14) v1cgywgoB609
Bhi01G001007Cucumber (Gy14) v1cgywgoB729
Bhi01G001007Cucumber (Gy14) v2cgybwgoB274
Bhi01G001007Cucumber (Gy14) v2cgybwgoB456
Bhi01G001007Cucurbita maxima (Rimu)cmawgoB0433
Bhi01G001007Cucurbita maxima (Rimu)cmawgoB0507
Bhi01G001007Cucurbita maxima (Rimu)cmawgoB0728
Bhi01G001007Cucurbita maxima (Rimu)cmawgoB0729
Bhi01G001007Cucurbita moschata (Rifu)cmowgoB0429
Bhi01G001007Cucurbita moschata (Rifu)cmowgoB0506
Bhi01G001007Cucurbita moschata (Rifu)cmowgoB0721
Bhi01G001007Cucurbita moschata (Rifu)cmowgoB0722
Bhi01G001007Cucurbita moschata (Rifu)cmowgoB1107
Bhi01G001007Cucurbita pepo (Zucchini)cpewgoB0025
Bhi01G001007Cucurbita pepo (Zucchini)cpewgoB0243
Bhi01G001007Cucurbita pepo (Zucchini)cpewgoB0290
Bhi01G001007Cucurbita pepo (Zucchini)cpewgoB0403
Bhi01G001007Cucurbita pepo (Zucchini)cpewgoB0925
Bhi01G001007Cucurbita pepo (Zucchini)cpewgoB0929
Bhi01G001007Wild cucumber (PI 183967)cpiwgoB286
Bhi01G001007Wild cucumber (PI 183967)cpiwgoB482
Bhi01G001007Cucumber (Chinese Long) v3cucwgoB290
Bhi01G001007Cucumber (Chinese Long) v3cucwgoB491
Bhi01G001007Cucumber (Chinese Long) v3cucwgoB574
Bhi01G001007Cucumber (Chinese Long) v2cuwgoB286
Bhi01G001007Cucumber (Chinese Long) v2cuwgoB479
Bhi01G001007Bottle gourd (USVL1VR-Ls)lsiwgoB044
Bhi01G001007Bottle gourd (USVL1VR-Ls)lsiwgoB434
Bhi01G001007Melon (DHL92) v3.6.1medwgoB039
Bhi01G001007Melon (DHL92) v3.6.1medwgoB543
Bhi01G001007Melon (DHL92) v3.5.1mewgoB040
Bhi01G001007Melon (DHL92) v3.5.1mewgoB541
Bhi01G001007Watermelon (Charleston Gray)wcgwgoB207
Bhi01G001007Watermelon (Charleston Gray)wcgwgoB440
Bhi01G001007Watermelon (97103) v2wgowmbB165
Bhi01G001007Watermelon (97103) v2wgowmbB192
Bhi01G001007Watermelon (97103) v1wgowmB213
Bhi01G001007Watermelon (97103) v1wgowmB224
Bhi01G001007Silver-seed gourdcarwgoB0008
Bhi01G001007Silver-seed gourdcarwgoB0836
Bhi01G001007Silver-seed gourdcarwgoB1017
Bhi01G001007Silver-seed gourdcarwgoB1065
Bhi01G001007Silver-seed gourdcarwgoB1082