Bhi01G000763 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G000763
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	heparanase-like protein 2
Location	chr1 : 19831220 .. 19831492 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGCTATAATAGTATTGGGGCAATTATTACTGTTGCACAATATGCAAAAGATTTGATCAAGCTTATGGAAATTGTTGATCGTTTGTACAACTTCCAACAAAAGTCTTTGATTGTAGCACCTAGTACATTTTTTCATGCCTCATCGTATGAAGATCTTGTTAATGAAACATATCCTAGTGTTGTCAATGTTCCGTTTGGAGTTCAGAACGTCGATCATCGAAAAAGTCATCGACATTCTGTTCTCCAATTTTTCCAACAAAATCGTTAA

mRNA sequence

ATGGTTGGCTATAATAGTATTGGGGCAATTATTACTGTTGCACAATATGCAAAAGATTTGATCAAGCTTATGGAAATTGTTGATCGTTTGTACAACTTCCAACAAAAGTCTTTGATTGTAGCACCTAGTACATTTTTTCATGCCTCATCGTATGAAGATCTTGTTAATGAAACATATCCTAGTGTTGTCAATGTTCCGTTTGGAGTTCAGAACGTCGATCATCGAAAAAGTCATCGACATTCTGTTCTCCAATTTTTCCAACAAAATCGTTAA

Coding sequence (CDS)

ATGGTTGGCTATAATAGTATTGGGGCAATTATTACTGTTGCACAATATGCAAAAGATTTGATCAAGCTTATGGAAATTGTTGATCGTTTGTACAACTTCCAACAAAAGTCTTTGATTGTAGCACCTAGTACATTTTTTCATGCCTCATCGTATGAAGATCTTGTTAATGAAACATATCCTAGTGTTGTCAATGTTCCGTTTGGAGTTCAGAACGTCGATCATCGAAAAAGTCATCGACATTCTGTTCTCCAATTTTTCCAACAAAATCGTTAA

Protein sequence

MVGYNSIGAIITVAQYAKDLIKLMEIVDRLYNFQQKSLIVAPSTFFHASSYEDLVNETYPSVVNVPFGVQNVDHRKSHRHSVLQFFQQNR

Homology

[Close]

BLAST of Bhi01G000763 vs. TrEMBL
Match: tr|A0A1S3AY64|A0A1S3AY64_CUCME (heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103483878 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MVGYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETY 60
           MVG+NSIG  IT AQYAKDLIKL EI+DRLY N QQK LI APS FF AS Y+D V  T 
Sbjct: 199 MVGHNSIGVNITSAQYAKDLIKLREIIDRLYNNSQQKPLIAAPSAFFDASWYKDFVYGTG 258

Query: 61  PSVVNV 66
           P +V++
Sbjct: 259 PGIVDI 264

[Close]

BLAST of Bhi01G000763 vs. TrEMBL
Match: tr|A0A0A0L5V7|A0A0A0L5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165650 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MVGYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETY 60
           MVG+NSIGA +T AQY KDLIKL EI+DRLY N QQK+ I APS FF+A  Y+D VN T 
Sbjct: 199 MVGHNSIGANVTSAQYEKDLIKLREIIDRLYNNSQQKASIAAPSAFFYAPWYKDFVNGTG 258

Query: 61  PSVVNV 66
           P +V++
Sbjct: 259 PGIVDI 264

[Close]

BLAST of Bhi01G000763 vs. TrEMBL
Match: tr|A0A0A0KUF1|A0A0A0KUF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043860 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1   MVGYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETY 60
           + G NSIGA I+ +QYAKDL+KL EIVDRLY N QQK LIVAP  FF    Y +LV +T 
Sbjct: 202 LAGRNSIGASISASQYAKDLLKLREIVDRLYKNSQQKPLIVAPGAFFDDKWYHELVTKTG 261

Query: 61  PSVVNV 66
           P VV+V
Sbjct: 262 PKVVSV 267

[Close]

BLAST of Bhi01G000763 vs. TrEMBL
Match: tr|A0A1S4E637|A0A1S4E637_CUCME (heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103504453 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 3   GYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETYPS 62
           G NSIGA ++ AQYAKDL+KL E+VDRLY N QQK +IVAP  FF    Y +LV +T P+
Sbjct: 130 GANSIGASVSAAQYAKDLLKLREMVDRLYENSQQKPMIVAPGAFFDDKWYHELVTKTGPN 189

Query: 63  VV 64
           VV
Sbjct: 190 VV 191

[Close]

BLAST of Bhi01G000763 vs. TrEMBL
Match: tr|A0A0A0KTJ9|A0A0A0KTJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G390000 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   MVGYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETY 60
           + G NSIGA ++ +QYAKDL+KL +I+DRLY N QQK LIVAP  FF    Y++LV +T 
Sbjct: 213 LAGPNSIGASVSASQYAKDLLKLRQIIDRLYKNSQQKPLIVAPGAFFDDKWYDELVTKTG 272

Query: 61  PSVVN 65
            +VV+
Sbjct: 273 SNVVS 277

[Close]

BLAST of Bhi01G000763 vs. NCBI nr
Match: XP_022137762.1 (heparanase-like protein 1 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 8.5e-13
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MVGYNSIGAIITVAQYAKDLIKLMEIVDRLYN--FQQKSLIVAPSTFFHASSYEDLVNET 60
           + GYNSIGA +T AQYAKDLIKL EI++RLYN    QK LIVAPS FF  S Y+DLV ET
Sbjct: 201 LAGYNSIGASVTTAQYAKDLIKLQEIINRLYNNSHLQKPLIVAPSAFFDDSWYDDLVKET 260

Query: 61  YPSVVNV 66
              VVNV
Sbjct: 261 GTGVVNV 267

[Close]

BLAST of Bhi01G000763 vs. NCBI nr
Match: XP_022157824.1 (heparanase-like protein 1 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 8.5e-13
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MVGYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETY 60
           + G +SIGA ITVAQYAKDLIKL EI+DRLY N QQK LIVAP  FF  + YEDLV ET 
Sbjct: 201 LAGSHSIGASITVAQYAKDLIKLREIIDRLYNNSQQKPLIVAPGAFFDGTWYEDLVKETG 260

Query: 61  PSVVNV 66
             VVNV
Sbjct: 261 TEVVNV 266

[Close]

BLAST of Bhi01G000763 vs. NCBI nr
Match: XP_022956085.1 (heparanase-like protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 3   GYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETYPS 62
           G NSIGA IT AQYAK LIKL EI+DRLY N +QK  IVAP  FF AS YED+VNET P+
Sbjct: 201 GSNSIGASITAAQYAKGLIKLREIIDRLYKNSRQKPSIVAPGAFFDASWYEDIVNETGPN 260

Query: 63  VVNV 66
           VV+V
Sbjct: 261 VVDV 264

[Close]

BLAST of Bhi01G000763 vs. NCBI nr
Match: XP_022956086.1 (heparanase-like protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 3   GYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETYPS 62
           G NSIGA IT AQYAK LIKL EI+DRLY N +QK  IVAP  FF AS YED+VNET P+
Sbjct: 201 GSNSIGASITAAQYAKGLIKLREIIDRLYKNSRQKPSIVAPGAFFDASWYEDIVNETGPN 260

Query: 63  VVNV 66
           VV+V
Sbjct: 261 VVDV 264

[Close]

BLAST of Bhi01G000763 vs. NCBI nr
Match: XP_022979750.1 (heparanase-like protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   GYNSIGAIITVAQYAKDLIKLMEIVDRLY-NFQQKSLIVAPSTFFHASSYEDLVNETYPS 62
           GYNSIGA IT  QYAK LIKL EI+D LY N +QK  IVAPS FF AS YED VNET P+
Sbjct: 201 GYNSIGASITATQYAKGLIKLREIIDCLYKNSRQKPSIVAPSAFFDASWYEDFVNETGPN 260

Query: 63  VVNV 66
           VV+V
Sbjct: 261 VVDV 264

The following BLAST results are available for this feature:

BLAST of Bhi01G000763 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000763 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G000763 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY64\|A0A1S3AY64_CUCME	1.6e-12	66.67	heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103483878 PE=4 SV=1	[more]
tr\|A0A0A0L5V7\|A0A0A0L5V7_CUCSA	1.6e-12	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165650 PE=4 SV=1	[more]
tr\|A0A0A0KUF1\|A0A0A0KUF1_CUCSA	1.2e-10	62.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043860 PE=4 SV=1	[more]
tr\|A0A1S4E637\|A0A1S4E637_CUCME	1.0e-09	61.29	heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103504453 PE=4 SV=1	[more]
tr\|A0A0A0KTJ9\|A0A0A0KTJ9_CUCSA	6.5e-09	55.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G390000 PE=4 SV=1	[more]

BLAST of Bhi01G000763 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137762.1	8.5e-13	67.16	heparanase-like protein 1 [Momordica charantia]	[more]
XP_022157824.1	8.5e-13	69.70	heparanase-like protein 1 [Momordica charantia]	[more]
XP_022956085.1	1.5e-12	70.31	heparanase-like protein 1 isoform X1 [Cucurbita moschata]	[more]
XP_022956086.1	1.5e-12	70.31	heparanase-like protein 2 isoform X2 [Cucurbita moschata]	[more]
XP_022979750.1	1.9e-12	70.31	heparanase-like protein 1 isoform X1 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016798	hydrolase activity, acting on glycosyl bonds

Vocabulary: **INTERPRO**
Term	Definition
IPR005199	Glyco_hydro_79

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0009505	plant-type cell wall
molecular_function	GO:0004566	beta-glucuronidase activity
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000763	Bhi01M000763	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005199	Glycoside hydrolase, family 79	PFAM	PF03662	Glyco_hydro_79n	coord: 5..65 e-value: 1.0E-10 score: 41.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G000763	Cucurbita maxima (Rimu)	cmawgoB0001
Bhi01G000763	Wax gourd	wgowgoB025
Bhi01G000763	Cucumber (Gy14) v1	cgywgoB074
Bhi01G000763	Cucumber (Gy14) v1	cgywgoB522
Bhi01G000763	Cucumber (Gy14) v2	cgybwgoB257
Bhi01G000763	Cucumber (Gy14) v2	cgybwgoB533
Bhi01G000763	Cucurbita maxima (Rimu)	cmawgoB0328
Bhi01G000763	Cucurbita maxima (Rimu)	cmawgoB0473
Bhi01G000763	Cucurbita maxima (Rimu)	cmawgoB1006
Bhi01G000763	Cucurbita maxima (Rimu)	cmawgoB1107
Bhi01G000763	Cucurbita moschata (Rifu)	cmowgoB0317
Bhi01G000763	Cucurbita moschata (Rifu)	cmowgoB0472
Bhi01G000763	Cucurbita moschata (Rifu)	cmowgoB1005
Bhi01G000763	Cucurbita moschata (Rifu)	cmowgoB1104
Bhi01G000763	Cucurbita pepo (Zucchini)	cpewgoB0188
Bhi01G000763	Cucurbita pepo (Zucchini)	cpewgoB0398
Bhi01G000763	Cucurbita pepo (Zucchini)	cpewgoB0783
Bhi01G000763	Cucurbita pepo (Zucchini)	cpewgoB1110
Bhi01G000763	Wild cucumber (PI 183967)	cpiwgoB269
Bhi01G000763	Wild cucumber (PI 183967)	cpiwgoB563
Bhi01G000763	Cucumber (Chinese Long) v3	cucwgoB272
Bhi01G000763	Cucumber (Chinese Long) v3	cucwgoB576
Bhi01G000763	Cucumber (Chinese Long) v2	cuwgoB269
Bhi01G000763	Cucumber (Chinese Long) v2	cuwgoB558
Bhi01G000763	Bottle gourd (USVL1VR-Ls)	lsiwgoB041
Bhi01G000763	Bottle gourd (USVL1VR-Ls)	lsiwgoB315
Bhi01G000763	Bottle gourd (USVL1VR-Ls)	lsiwgoB432
Bhi01G000763	Melon (DHL92) v3.6.1	medwgoB106
Bhi01G000763	Melon (DHL92) v3.6.1	medwgoB530
Bhi01G000763	Melon (DHL92) v3.5.1	mewgoB105
Bhi01G000763	Melon (DHL92) v3.5.1	mewgoB529
Bhi01G000763	Watermelon (Charleston Gray)	wcgwgoB426
Bhi01G000763	Watermelon (Charleston Gray)	wcgwgoB521
Bhi01G000763	Watermelon (97103) v2	wgowmbB178
Bhi01G000763	Watermelon (97103) v2	wgowmbB203
Bhi01G000763	Watermelon (97103) v1	wgowmB201
Bhi01G000763	Watermelon (97103) v1	wgowmB238
Bhi01G000763	Silver-seed gourd	carwgoB0086
Bhi01G000763	Silver-seed gourd	carwgoB0365
Bhi01G000763	Silver-seed gourd	carwgoB0828
Bhi01G000763	Silver-seed gourd	carwgoB1105