Bhi01G000410 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G000410
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Zinc finger, CCHC-type
Location	chr1 : 9948783 .. 9949094 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATTCGTGTAGCAACAGATATCTCAAAACCTCTTAAGCGTGAAATTAAAATTAAATCAACCTCTCATCCAGAGGGCCAATGGTTCAACATTCGCTATGACAGACTCCCATATTTGTGTTTCATGTGTGGTCACATTAGCCATTTAATCAAGACCTGGCAAGATAGATCAAAAGAAAAGGATAAAGAATTACTTCAATATGGTCCTCGATTGAAATATCAAGGACCTACCCAATTCAAGAAGAAGACTCCACCACCATCGTATGAAAAAAAAATGAGGAAAAAACCACAGGGACCTCCCAAAAAATAA

mRNA sequence

ATGAGGATTCGTGTAGCAACAGATATCTCAAAACCTCTTAAGCGTGAAATTAAAATTAAATCAACCTCTCATCCAGAGGGCCAATGGTTCAACATTCGCTATGACAGACTCCCATATTTGTGTTTCATGTGTGGTCACATTAGCCATTTAATCAAGACCTGGCAAGATAGATCAAAAGAAAAGGATAAAGAATTACTTCAATATGGTCCTCGATTGAAATATCAAGGACCTACCCAATTCAAGAAGAAGACTCCACCACCATCGTATGAAAAAAAAATGAGGAAAAAACCACAGGGACCTCCCAAAAAATAA

Coding sequence (CDS)

ATGAGGATTCGTGTAGCAACAGATATCTCAAAACCTCTTAAGCGTGAAATTAAAATTAAATCAACCTCTCATCCAGAGGGCCAATGGTTCAACATTCGCTATGACAGACTCCCATATTTGTGTTTCATGTGTGGTCACATTAGCCATTTAATCAAGACCTGGCAAGATAGATCAAAAGAAAAGGATAAAGAATTACTTCAATATGGTCCTCGATTGAAATATCAAGGACCTACCCAATTCAAGAAGAAGACTCCACCACCATCGTATGAAAAAAAAATGAGGAAAAAACCACAGGGACCTCCCAAAAAATAA

Protein sequence

MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKEKDKELLQYGPRLKYQGPTQFKKKTPPPSYEKKMRKKPQGPPKK

Homology

[Close]

BLAST of Bhi01G000410 vs. TrEMBL
Match: tr|A0A2P4JZH1|A0A2P4JZH1_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_07261 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQ--WFNIRYDRLPYLCFMCGHISHLIKTWQDRS 60
           MRIRV   + KPL+R  K+ S    EG   W N +Y+RLP  CF CG++ H  K  +D S
Sbjct: 169 MRIRVELQLDKPLRRGGKVASL---EGDKFWVNFKYERLPTFCFQCGNLGHDEKHCKDPS 228

Query: 61  KEKDKELLQYGPRLKYQG 77
            +K+ +  QYG  L+ QG
Sbjct: 229 DQKNTK--QYGEWLRAQG 241

[Close]

BLAST of Bhi01G000410 vs. TrEMBL
Match: tr|A0A2N9J4C9|A0A2N9J4C9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59073 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           MR+RV+ DI+KPL R  K++     E  W + RY+RLP  C+ CGH++H  K      + 
Sbjct: 163 MRLRVSLDITKPLCRGRKVRFEKDRE-TWISFRYERLPNFCYWCGHVTHSDKDCPHWLRN 222

Query: 61  KDK---ELLQYGPRLKYQGPTQFKK 83
           KD    E  Q+GP L+      ++K
Sbjct: 223 KDSLQLEDQQFGPWLRASTDRPWRK 246

[Close]

BLAST of Bhi01G000410 vs. TrEMBL
Match: tr|A0A2N9J809|A0A2N9J809_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60637 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           MR+RV+ DI+KPL R  K++     E  W + RY+RLP  C+ CGH++H  K      + 
Sbjct: 163 MRLRVSLDITKPLCRGRKVRFEKDRE-TWISFRYERLPNFCYWCGHVTHSDKDCPHWLRN 222

Query: 61  KDK---ELLQYGPRLKYQGPTQFKK 83
           KD    E  Q+GP L+      ++K
Sbjct: 223 KDSLQLEDQQFGPWLRASTDRPWRK 246

[Close]

BLAST of Bhi01G000410 vs. TrEMBL
Match: tr|A0A2P4JTZ3|A0A2P4JTZ3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_71179 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 1  MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
          MR+RV   + KPL+R  KI S    E  W + RY+RLP  CF CG + H +K  Q+ S  
Sbjct: 1  MRVRVDLQLDKPLRRGGKIASV-EGEKFWVSFRYERLPTFCFHCGRLGHDLKHCQETSNN 60

Query: 61 KDKELLQYGPRLKYQG 77
          +     QYG  L+ QG
Sbjct: 61 QSSS-NQYGDWLRAQG 74

[Close]

BLAST of Bhi01G000410 vs. TrEMBL
Match: tr|A0A2N9GPY1|A0A2N9GPY1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29425 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           MR+RV  DI+KPL R  K++     E  W   RY+RLP  C+ CGH++H  K      + 
Sbjct: 163 MRLRVNLDITKPLCRGRKVRFEKDRE-TWITFRYERLPNFCYWCGHVTHSDKDCPHWLRN 222

Query: 61  KDK---ELLQYGPRLKYQGPTQFKK 83
           KD    E  Q+GP L+      ++K
Sbjct: 223 KDSLRLEEQQFGPWLRAPNERPWRK 246

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 9.5e-08
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R+RV  D+ KPL R IK+       G W  I+Y+RLP   + CG + H++K   D   +
Sbjct: 172 LRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVD 231

Query: 61  KDKELLQYGPRLKYQG 77
              + LQYGP L++QG
Sbjct: 232 SVSKNLQYGPWLRFQG 247

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_012699899.1 (uncharacterized protein LOC101764448 [Setaria italica])

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISH 50
           +R RVA  I KP++R I+++   + E +WF I+Y+RLPY+CF CG + H
Sbjct: 178 LRARVAIQIDKPVRRGIRLRVNKNEEPRWFQIQYERLPYICFHCGFMGH 226

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_012701525.1 (uncharacterized protein LOC101785285 [Setaria italica] >XP_012702360.1 uncharacterized protein LOC101786648 [Setaria italica])

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISH 50
           +R RVA  I KP++R I+++   + E +WF I+Y+RLPY+CF CG + H
Sbjct: 186 LRARVAIQIDKPVRRGIRLRVNKNEEPRWFQIQYERLPYICFHCGFMGH 234

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDR--- 60
           +RIRV  DI+KPL+R IKI       G W  I+Y+RLP  C+ CG I H       R   
Sbjct: 171 LRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLA 230

Query: 61  SKEKDKELLQYGPRLKYQG 77
           +++  +   +YGP L++ G
Sbjct: 231 AQDDSRATSEYGPWLRFVG 249

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_021750220.1 (uncharacterized protein LOC110715908 [Chenopodium quinoa])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 2   RIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIK-TWQDRSKE 61
           R+RV  DI KP+KR  KIK+ +  +  W   +Y+RLP LCF CG I H  K   +DR+K 
Sbjct: 168 RVRVLMDIRKPIKRWQKIKNKAGQDA-WVVFKYERLPMLCFECGLIGHTDKDCLEDRTKA 227

Query: 62  KDKELLQYGPRLKYQGPTQF 81
           + KE+L+    LK +GP +F
Sbjct: 228 R-KEVLE----LKARGPLEF 241

The following BLAST results are available for this feature:

BLAST of Bhi01G000410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G000410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4JZH1\|A0A2P4JZH1_QUESU	3.4e-06	43.59	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_07261 PE=4 SV=1	[more]
tr\|A0A2N9J4C9\|A0A2N9J4C9_FAGSY	1.0e-05	37.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59073 PE=4 SV=1	[more]
tr\|A0A2N9J809\|A0A2N9J809_FAGSY	1.0e-05	37.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60637 PE=4 SV=1	[more]
tr\|A0A2P4JTZ3\|A0A2P4JTZ3_QUESU	1.0e-05	42.11	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_71179 PE=4 SV=1	[more]
tr\|A0A2N9GPY1\|A0A2N9GPY1_FAGSY	1.7e-05	37.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29425 PE=4 SV=1	[more]

BLAST of Bhi01G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132681.1	9.5e-08	39.47	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_012699899.1	1.8e-06	46.94	uncharacterized protein LOC101764448 [Setaria italica]	[more]
XP_012701525.1	1.8e-06	46.94	uncharacterized protein LOC101785285 [Setaria italica] >XP_012702360.1 uncharact...	[more]
XP_022156185.1	2.3e-06	39.24	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_021750220.1	4.0e-06	45.00	uncharacterized protein LOC110715908 [Chenopodium quinoa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025836	Zn_knuckle_CX2CX4HX4C

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000410	Bhi01M000410	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 8..52 e-value: 1.8E-10 score: 40.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..103
None	No IPR available	PANTHER	PTHR31286	FAMILY NOT NAMED	coord: 2..100

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G000410	Watermelon (97103) v2	wgowmbB191
Bhi01G000410	Watermelon (97103) v1	wgowmB212
Bhi01G000410	Silver-seed gourd	carwgoB0111
Bhi01G000410	Silver-seed gourd	carwgoB0166
Bhi01G000410	Silver-seed gourd	carwgoB1162
Bhi01G000410	Wax gourd	wgowgoB026
Bhi01G000410	Cucumber (Gy14) v1	cgywgoB514
Bhi01G000410	Cucumber (Gy14) v2	cgybwgoB272
Bhi01G000410	Cucurbita maxima (Rimu)	cmawgoB0315
Bhi01G000410	Cucurbita maxima (Rimu)	cmawgoB1011
Bhi01G000410	Cucurbita moschata (Rifu)	cmowgoB0303
Bhi01G000410	Cucurbita moschata (Rifu)	cmowgoB1013
Bhi01G000410	Cucurbita pepo (Zucchini)	cpewgoB0770
Bhi01G000410	Cucurbita pepo (Zucchini)	cpewgoB1105
Bhi01G000410	Wild cucumber (PI 183967)	cpiwgoB284
Bhi01G000410	Cucumber (Chinese Long) v3	cucwgoB288
Bhi01G000410	Cucumber (Chinese Long) v2	cuwgoB284
Bhi01G000410	Bottle gourd (USVL1VR-Ls)	lsiwgoB433
Bhi01G000410	Melon (DHL92) v3.6.1	medwgoB542
Bhi01G000410	Melon (DHL92) v3.5.1	mewgoB540
Bhi01G000410	Watermelon (Charleston Gray)	wcgwgoB439