Bhi01G000212 (gene) Wax gourd

NameBhi01G000212
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1 : 5622608 .. 5623337 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAGTACTTGATTTAAAAGGAAAATTGGAGACAATGAAAAAAGGCAATCTGAAGTTAGAGGAGTATTTTCACAAGATTAAAAACTTAGTTGATTCATTAAAGGTTGTCAGTCAATCTATCTCTTATGAAGATCATGTTATGCATATTCTAGTCAGTTTGGGACCTGGGTATGACTCTACTGTTTTTATCATCACAGACAAGGATGAATACCCTTCTTTACAAAGGGATAATTCTCAGTTCCTTGCTCAAGAAAATCGTGTTGAGAGACATAGCCTAGTGAATGTTGATGGTTCTACCCCTTTAGTCAATCTCACCACACAAACTTCATCCAAACAACCTTATTCTTCTCCTTTTCAACCCAATAATAATAATACCGAGTGTAACAGAAGAAGTAAGAATTCGATTGGCAAGCAGAACATAAGATTTTGGAACAATAATGGTAAACCTCAATGCCAAGTTTGTGGCAAGTTTGGACACACTACTCTTAAGCGTTATCTTCTTCTTGAGAAATGGTTTCATAGACCAAACTCAAGTAATAATACATAGCATACTTCTTCCAATCATCAAGGACAACATATAGGGAATTCCTGTGTGAATATTCTGTCTATACAAAATGATCTCAATAGGGAAAACCAGTGGTTTCGGAAACTCTAGAGCCACTAGTCACGTCACAAATGATGCATCTAATCTCACTTTTGGTACTGAATATCTTGGTGACAGTTAG

mRNA sequence

ATGGCTCGAGTACTTGATTTAAAAGGAAAATTGGAGACAATGAAAAAAGGCAATCTGAAGTTAGAGGAGTATTTTCACAAGATTAAAAACTTAGTTGATTCATTAAAGGTTGTCAGTCAATCTATCTCTTATGAAGATCATGTTATGCATATTCTAGTCAGTTTGGGACCTGGGTATGACTCTACTGTTTTTATCATCACAGACAAGGATGAATACCCTTCTTTACAAAGGGATAATTCTCAGTTCCTTGCTCAAGAAAATCGTGTTGAGAGACATAGCCTAGTGAATGTTGATGGTTCTACCCCTTTAGTCAATCTCACCACACAAACTTCATCCAAACAACCTTATTCTTCTCCTTTTCAACCCAATAATAATAATACCGAGTGTAACAGAAGAAGTAAGAATTCGATTGGCAAGCAGAACATAAGATTTTGGAACAATAATGGGAAAACCAGTGGTTTCGGAAACTCTAGAGCCACTAGTCACGTCACAAATGATGCATCTAATCTCACTTTTGGTACTGAATATCTTGGTGACAGTTAG

Coding sequence (CDS)

ATGGCTCGAGTACTTGATTTAAAAGGAAAATTGGAGACAATGAAAAAAGGCAATCTGAAGTTAGAGGAGTATTTTCACAAGATTAAAAACTTAGTTGATTCATTAAAGGTTGTCAGTCAATCTATCTCTTATGAAGATCATGTTATGCATATTCTAGTCAGTTTGGGACCTGGGTATGACTCTACTGTTTTTATCATCACAGACAAGGATGAATACCCTTCTTTACAAAGGGATAATTCTCAGTTCCTTGCTCAAGAAAATCGTGTTGAGAGACATAGCCTAGTGAATGTTGATGGTTCTACCCCTTTAGTCAATCTCACCACACAAACTTCATCCAAACAACCTTATTCTTCTCCTTTTCAACCCAATAATAATAATACCGAGTGTAACAGAAGAAGTAAGAATTCGATTGGCAAGCAGAACATAAGATTTTGGAACAATAATGGGAAAACCAGTGGTTTCGGAAACTCTAGAGCCACTAGTCACGTCACAAATGATGCATCTAATCTCACTTTTGGTACTGAATATCTTGGTGACAGTTAG

Protein sequence

MARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDSTVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSSPFQPNNNNTECNRRSKNSIGKQNIRFWNNNGKTSGFGNSRATSHVTNDASNLTFGTEYLGDS
BLAST of Bhi01G000212 vs. TAIR10
Match: AT1G34070.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 34/125 (27.20%), Postives = 63/125 (50.40%), Query Frame = 0

Query: 2   ARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDS 61
           AR L L  +L T   G++++ +Y+ K+K L DSL+ V   ++  + VM++L  L P +D+
Sbjct: 112 ARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDN 171

Query: 62  TVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSSPFQ 121
            + +I  +  +PS     +    +E+R++R    N        + T    S+ P  + FQ
Sbjct: 172 IINVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQ 231

Query: 122 PNNNN 127
            +  N
Sbjct: 232 RSGGN 236

BLAST of Bhi01G000212 vs. TrEMBL
Match: tr|A0A2P5AY04|A0A2P5AY04_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_338080 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-10
Identity = 56/154 (36.36%), Postives = 82/154 (53.25%), Query Frame = 0

Query: 2   ARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDS 61
           A+++  K +L+T+KKG + + EY  K+K+  D L      +S ED ++++L  LG  YDS
Sbjct: 32  AKIMQYKLQLQTLKKGGMSMREYLLKMKSAADVLASAGHVVSEEDQILYVLARLGIEYDS 91

Query: 62  TVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSSPFQ 121
            V  IT   E  +L    +  LAQE R+E+HS    DG+ P VNL  QT   QP +   +
Sbjct: 92  VVVSITSCPEPYTLTDLGALLLAQEGRIEQHS-ATTDGTNPSVNLAFQT---QPPNGQ-K 151

Query: 122 PNNNNTECNRRSKNSIGKQNI--RFWNNNGKTSG 154
           PN+ +        NS GK  +   F NN G+  G
Sbjct: 152 PNSGS--------NSYGKNQLSPHFSNNCGRGRG 172

BLAST of Bhi01G000212 vs. TrEMBL
Match: tr|A0A2P4LQ31|A0A2P4LQ31_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37452 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 2  ARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDS 61
          AR++ LK +L+T KKGNL + +Y  KIK+L DSL   +Q I   D ++HIL  L P Y+S
Sbjct: 8  ARIMQLKLELQTTKKGNLSMTDYLQKIKSLADSLAAAAQPIPEPDLILHILGGLSPEYES 67

Query: 62 TVFIITDKDEYPSLQRDNSQFLAQENRV 90
           V  +T + +  SL+  N+  L QE R+
Sbjct: 68 FVTSVTTRSDDLSLEDLNAMLLNQEMRI 95

BLAST of Bhi01G000212 vs. TrEMBL
Match: tr|A0A2I4EF20|A0A2I4EF20_9ROSI (uncharacterized protein LOC108989009 OS=Juglans regia OX=51240 GN=LOC108989009 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 42/130 (32.31%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 2   ARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDS 61
           A+++ ++ +L T +K N    EYF  IK L D+L +  Q ++ +D + ++L  LGP YDS
Sbjct: 117 AQIIQVRTQLSTARKTNQTASEYFMHIKRLADNLAIAGQPLNTDDTITYLLAGLGPEYDS 176

Query: 62  TVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSSPFQ 121
            V I++ +D   +L+   S  L  E R+  HS      STP +N++   ++ Q   SP++
Sbjct: 177 LVTIMSARDASLTLEEVYSMLLTCEARIAHHS-----QSTPTMNVSGNVATSQQNFSPYR 236

Query: 122 -PNNNNTECN 131
             +N+N  C+
Sbjct: 237 GRSNSNRGCS 241

BLAST of Bhi01G000212 vs. TrEMBL
Match: tr|A0A2H5PGR9|A0A2H5PGR9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135090 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 2   ARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDS 61
           ARVL L+ +++T KKG   + EY+ K+K L++SL+    S++ +D +M +L  LGP YDS
Sbjct: 155 ARVLYLRTQIQTTKKGPSTIHEYYSKMKTLLNSLRAAGNSMNDDDFIMCVLAGLGPEYDS 214

Query: 62  TVFIITDKDEYPSLQRDNSQFLAQENRVERH 93
            V  I      PS+       L+QEN+ E++
Sbjct: 215 VVTNINSMQNNPSISEVYGMLLSQENKTEQN 245

BLAST of Bhi01G000212 vs. TrEMBL
Match: tr|W9RMW7|W9RMW7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007042 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 40/119 (33.61%), Postives = 67/119 (56.30%), Query Frame = 0

Query: 2   ARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYDS 61
           A+++  K +++T+KK  + + EY  K+K   D L  V   IS EDH++HIL SLG  Y  
Sbjct: 24  AKIMQYKLQIQTLKKCTMSMHEYLTKMKAYCDVLASVGHKISDEDHILHILSSLGTKYVP 83

Query: 62  TVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSSPF 121
            +  IT + E  +++   +  ++ E R+ER   ++ DGS PL  L ++T ++    S F
Sbjct: 84  VMVTITSRTEPWTVKDVGTLLISFETRLERGQPISTDGSLPLQILLSKTRNRGVVISDF 142

BLAST of Bhi01G000212 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 2.6e-21
Identity = 72/153 (47.06%), Postives = 93/153 (60.78%), Query Frame = 0

Query: 1   MARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYD 60
           +ARV+ LK KLE  KKGNL L++YF KIKNLVDSL +  + +S EDH+MHIL  LGP +D
Sbjct: 135 LARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFD 194

Query: 61  STVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQ---PYS 120
           + + +IT ++   +LQ   S  L QE R ER +L+N DGS P VNLT   SSK+     S
Sbjct: 195 AIISVITARNMPQTLQEVCSLLLQQEGRNER-NLINSDGSLPSVNLTLNDSSKKNNLHQS 254

Query: 121 SPFQPNNNNTECNRRSKNSIGKQNIRFWNNNGK 151
             F P+ +N     R  N+    N R W  N K
Sbjct: 255 KCFNPHQSNYSQRGRGTNN-RSSNRRNWTGNNK 285

BLAST of Bhi01G000212 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 0

Query: 1   MARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYD 60
           +ARV+ LK KLE +KKGNL L++YF K+K LVDSL    + ++ EDH+MHIL  L   ++
Sbjct: 45  LARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFE 104

Query: 61  STVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSS-- 120
           STV +I+ + +  +LQ   S  L+ E R ER+S +N DG+ P VNLT QT +     S  
Sbjct: 105 STVSVISARTQTQTLQEVYSLLLSHEGRNERNS-INTDGTLPSVNLTQQTKNSNSAQSID 164

Query: 121 ---PFQPNNNNTECNRRSKNSIGKQNIRFWNNNGK 151
              P+  NN       RSKNS      R WN+N +
Sbjct: 165 GQRPYMQNN-------RSKNSGNPNFRRNWNSNNR 191

BLAST of Bhi01G000212 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 0

Query: 1   MARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYD 60
           +ARV+ LK KLE +KKGNL L++YF K+K LVDSL    + ++ EDH+MHIL  L   ++
Sbjct: 45  LARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFE 104

Query: 61  STVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSS-- 120
           STV +I+ + +  +LQ   S  L+ E R ER+S +N DG+ P VNLT QT +     S  
Sbjct: 105 STVSVISARTQTQTLQEVYSLLLSHEGRNERNS-INTDGTLPSVNLTQQTKNSNSAQSID 164

Query: 121 ---PFQPNNNNTECNRRSKNSIGKQNIRFWNNNGK 151
              P+  NN       RSKNS      R WN+N +
Sbjct: 165 GQRPYMQNN-------RSKNSGNPNFRRNWNSNNR 191

BLAST of Bhi01G000212 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 64/179 (35.75%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYD 60
           +ARV+ LK KLE MKKG++ L+ YF KIKNLVDSL    + +  +DH+MHIL  LGP +D
Sbjct: 112 LARVMQLKSKLENMKKGSMNLKNYFLKIKNLVDSLATAGKRLPTDDHIMHILARLGPEFD 171

Query: 61  STVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNLTTQTSSKQPYSSPF 120
           S V +I+ +    S+Q  +S   +              G  P V  +T  SS    S+P 
Sbjct: 172 SIVSVISTRKSPQSIQEPSSNGFSH-------------GFPPQVQSSTGFSSS---STPA 231

Query: 121 QPNNNNTECNRRSKNSIGKQNIRFWNNNGKTSGFGNSRATSHVTNDASNLTFGTEYLGD 180
           Q N      +     ++   N    + N   + + +S AT+HVTND  N + G++Y G+
Sbjct: 232 QSNFGVFGGSTPQMQAMMVAN----DFNRDVTWYPDSGATNHVTNDFGNFSLGSKYHGN 270

BLAST of Bhi01G000212 vs. NCBI nr
Match: XP_022158089.1 (uncharacterized protein LOC111024658 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-12
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 1   MARVLDLKGKLETMKKGNLKLEEYFHKIKNLVDSLKVVSQSISYEDHVMHILVSLGPGYD 60
           + +V+ LK +L+ ++KG L L+EY  +IKNLVDSLK   +S++ EDH+MHIL  LG  Y+
Sbjct: 31  LTKVMQLKTQLQNLRKGGLSLKEYIRQIKNLVDSLKAAGKSMNTEDHIMHILSGLGSEYE 90

Query: 61  STVFIITDKDEYPSLQRDNSQFLAQENRVERHSLVNVDGSTPLVNL 107
           STV +IT K    ++Q   +  L+ + R+E+      D + P  ++
Sbjct: 91  STVSVITVKKGPLTIQDVTALLLSHQRRIEKEISAAKDVTLPSASI 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G34070.12.6e-0727.20Retrotransposon gag protein (InterPro:IPR005162)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P5AY04|A0A2P5AY04_9ROSA5.2e-1036.36Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_338080 PE=4 S... [more]
tr|A0A2P4LQ31|A0A2P4LQ31_QUESU2.6e-0943.18Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37452 PE=4 SV=1[more]
tr|A0A2I4EF20|A0A2I4EF20_9ROSI1.3e-0832.31uncharacterized protein LOC108989009 OS=Juglans regia OX=51240 GN=LOC108989009 P... [more]
tr|A0A2H5PGR9|A0A2H5PGR9_CITUN1.3e-0838.46Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135090 PE=4 SV=1[more]
tr|W9RMW7|W9RMW7_9ROSA1.7e-0833.61Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007042 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022154487.12.6e-2147.06uncharacterized protein LOC111021757 [Momordica charantia][more]
XP_022136883.12.9e-2043.23dr1-associated corepressor homolog isoform X2 [Momordica charantia][more]
XP_022136882.12.9e-2043.23dr1-associated corepressor homolog isoform X1 [Momordica charantia][more]
XP_022156747.12.6e-1335.75uncharacterized protein LOC111023586 [Momordica charantia][more]
XP_022158089.12.2e-1239.62uncharacterized protein LOC111024658 [Momordica charantia][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000212Bhi01M000212mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..89
e-value: 8.5E-9
score: 35.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..136
NoneNo IPR availablePANTHERPTHR11439:SF232SUBFAMILY NOT NAMEDcoord: 2..175
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..175

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None