MS015086 (gene) Bitter gourd (TR) v1

Overview


Name	MS015086
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor PAR1-like
Location	scaffold2: 1066774 .. 1067046 (-)
RNA-Seq Expression	MS015086
Synteny	MS015086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATACTATTGTGTATCTTCAACCGACGCCAAAGGAATTGGGATTGGGAAGGTGAAGTGGCAGAGGAGGGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCTGTGCAGATGAAGATGAGGAAGCTGCAGCGGCTGATCCCCGGAGGGCGGGGGCTGAAGCCGGACCGCCTCTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTAATGTTTTGCAAGCACTTTCCAAGATTTACGAACCCACCCTAATTTCTAAATAT

mRNA sequence

ATGGAATACTATTGTGTATCTTCAACCGACGCCAAAGGAATTGGGATTGGGAAGGTGAAGTGGCAGAGGAGGGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCTGTGCAGATGAAGATGAGGAAGCTGCAGCGGCTGATCCCCGGAGGGCGGGGGCTGAAGCCGGACCGCCTCTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTAATGTTTTGCAAGCACTTTCCAAGATTTACGAACCCACCCTAATTTCTAAATAT

Coding sequence (CDS)

ATGGAATACTATTGTGTATCTTCAACCGACGCCAAAGGAATTGGGATTGGGAAGGTGAAGTGGCAGAGGAGGGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCTGTGCAGATGAAGATGAGGAAGCTGCAGCGGCTGATCCCCGGAGGGCGGGGGCTGAAGCCGGACCGCCTCTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTAATGTTTTGCAAGCACTTTCCAAGATTTACGAACCCACCCTAATTTCTAAATAT

Protein sequence

MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTADYIMQLRSQVNVLQALSKIYEPTLISKY

Homology

[Close]

BLAST of MS015086 vs. NCBI nr
Match: XP_022151226.1 (transcription factor PAR2 [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60
          MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL
Sbjct: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60

Query: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 92
          KTADYIMQLRSQVNVLQALSKIYEPTLISKY
Sbjct: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 91

[Close]

BLAST of MS015086 vs. NCBI nr
Match: XP_038891463.1 (transcription factor PAR2 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60
          MEYY  +S ++K  GIG VKWQRRGRRGGRH G SVQMKMRKLQRLIPGGR LKPDRLFL
Sbjct: 1  MEYY--NSCESK--GIGNVKWQRRGRRGGRH-GASVQMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 92
          KTADYIMQLRSQV+VLQALSKIY+P L SKY
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPRL-SKY 85

[Close]

BLAST of MS015086 vs. NCBI nr
Match: XP_008446236.1 (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 3  YYCVSSTDAKGIGIGKVKWQRRGRRGGRH-----GGGSVQMKMRKLQRLIPGGRGLKPDR 62
          YY +  ++    GIGKV+WQRRGRRGGRH     GGGSV MKMRKLQRLIPGGR LKPDR
Sbjct: 4  YYSICESN----GIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDR 63

Query: 63 LFLKTADYIMQLRSQVNVLQALSKIYEPTL 88
          LFLKTADYIMQLRSQV+VLQALSKIY+PTL
Sbjct: 64 LFLKTADYIMQLRSQVHVLQALSKIYDPTL 89

[Close]

BLAST of MS015086 vs. NCBI nr
Match: XP_022957171.1 (transcription factor PAR2-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.4e-27
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60
          MEYY    T     GI KVKWQRRGRRGGRHGG SV MK+RKLQR+IPGGR LKPDRLFL
Sbjct: 1  MEYYNCDETR----GIAKVKWQRRGRRGGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 92
          KTADYIMQLRSQV+VL ALSKIY+P L S+Y
Sbjct: 61 KTADYIMQLRSQVHVLNALSKIYDPQL-SRY 86

[Close]

BLAST of MS015086 vs. NCBI nr
Match: XP_023513052.1 (transcription factor PAR2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 9.2e-27
Identity = 71/90 (78.89%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGG---SVQMKMRKLQRLIPGGRGLKPDR 60
          MEYY    T     GI KVKWQRRGRRGGRHGGG   SV MK+RKLQRLIPGGR LKPDR
Sbjct: 1  MEYYNCDETR----GIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDR 60

Query: 61 LFLKTADYIMQLRSQVNVLQALSKIYEPTL 88
          LFLKTADYIMQLRSQV+VLQALSKIY+P L
Sbjct: 61 LFLKTADYIMQLRSQVHVLQALSKIYDPQL 86

[Close]

BLAST of MS015086 vs. ExPASy TrEMBL
Match: A0A6J1DDZ5 (transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.5e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60
          MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL
Sbjct: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60

Query: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 92
          KTADYIMQLRSQVNVLQALSKIYEPTLISKY
Sbjct: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 91

[Close]

BLAST of MS015086 vs. ExPASy TrEMBL
Match: A0A1S3BFE3 (uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 3  YYCVSSTDAKGIGIGKVKWQRRGRRGGRH-----GGGSVQMKMRKLQRLIPGGRGLKPDR 62
          YY +  ++    GIGKV+WQRRGRRGGRH     GGGSV MKMRKLQRLIPGGR LKPDR
Sbjct: 4  YYSICESN----GIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDR 63

Query: 63 LFLKTADYIMQLRSQVNVLQALSKIYEPTL 88
          LFLKTADYIMQLRSQV+VLQALSKIY+PTL
Sbjct: 64 LFLKTADYIMQLRSQVHVLQALSKIYDPTL 89

[Close]

BLAST of MS015086 vs. ExPASy TrEMBL
Match: A0A6J1GYH6 (transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60
          MEYY    T     GI KVKWQRRGRRGGRHGG SV MK+RKLQR+IPGGR LKPDRLFL
Sbjct: 1  MEYYNCDETR----GIAKVKWQRRGRRGGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVNVLQALSKIYEPTLISKY 92
          KTADYIMQLRSQV+VL ALSKIY+P L S+Y
Sbjct: 61 KTADYIMQLRSQVHVLNALSKIYDPQL-SRY 86

[Close]

BLAST of MS015086 vs. ExPASy TrEMBL
Match: A0A0A0KQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 15 GIGKVKWQRRGRRGGRH---GGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTADYIMQLRS 74
          GIGKV+WQRRGRRGGRH   GGGSV MKMRKLQRLIPGGR LKPDRLFLKTADYIMQLRS
Sbjct: 12 GIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRS 71

Query: 75 QVNVLQALSKIYEPTL 88
          QV+VLQALSKIY+PTL
Sbjct: 72 QVHVLQALSKIYDPTL 87

[Close]

BLAST of MS015086 vs. ExPASy TrEMBL
Match: A0A6J1IR24 (uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGG-GSVQMKMRKLQRLIPGGRGLKPDRLF 60
          MEYY  +  +AK  GI KVKWQRRGRRGG HGG  SV MKMRKLQRLIPGGR LKPDRLF
Sbjct: 1  MEYY--NCDEAK--GIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LKTADYIMQLRSQVNVLQALSKIYEPTL 88
          LKTADYIMQLRSQV+VLQALSKIY+P L
Sbjct: 61 LKTADYIMQLRSQVHVLQALSKIYDPRL 84

[Close]

BLAST of MS015086 vs. TAIR 10
Match: AT1G23965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 22  QRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGL-KPDRLFLKTADYIMQLRSQVNVLQALS 81
           Q + + G   G GS+Q+KMRKL+ LIPGGR L +PD L  KTADYIM L  ++  L+A+S
Sbjct: 52  QTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRFLKAIS 111

Query: 82  KIY 84
            IY
Sbjct: 112 DIY 114

[Close]

BLAST of MS015086 vs. TAIR 10
Match: AT1G70270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 31 HGGGS----VQMKMRKLQRLIPGGRGLK-PDRLFLKTADYIMQLRSQVNVLQALSKIY 84
          HG GS    +QMK+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Sbjct: 27 HGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLKAISEMY 84

The following BLAST results are available for this feature:

BLAST of MS015086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151226.1	1.6e-42	100.00	transcription factor PAR2 [Momordica charantia]	[more]
XP_038891463.1	2.4e-27	82.42	transcription factor PAR2 [Benincasa hispida]	[more]
XP_008446236.1	4.1e-27	77.78	PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo]	[more]
XP_022957171.1	5.4e-27	76.92	transcription factor PAR2-like [Cucurbita moschata]	[more]
XP_023513052.1	9.2e-27	78.89	transcription factor PAR2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS015086 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDZ5	7.5e-43	100.00	transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV...	[more]
A0A1S3BFE3	2.0e-27	77.78	uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=...	[more]
A0A6J1GYH6	2.6e-27	76.92	transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=...	[more]
A0A0A0KQB4	4.4e-27	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1	[more]
A0A6J1IR24	4.9e-26	80.68	uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674...	[more]

BLAST of MS015086 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23965.1	1.1e-09	53.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G70270.1	1.5e-06	48.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 18..83
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 18..83
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 35..79 e-value: 1.39826E-13 score: 57.6324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015086.1	MS015086.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated