Spg032235.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg032235.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold2: 36129444 .. 36130814 (+)
Sequence length	1176
RNA-Seq Expression	Spg032235.1
Synteny	Spg032235.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGAGAGATGGGAGCCCAGAGATTTGCTGCCCTTGAAGAAGAAGCAAATAGGTGAGAAAAAGAAGAAGCCGCCAAGGCAGTTGGAAGCTCTCGGCAAGGAGAAGCTTCAACGAGTAAAAATTCCGAACCTTCAACTAACCCCTCTTTATCTTGCAGGACCAAGCCCGTTGTTACCTATAGCGCAAGAAAGAGGAGCCCGAAGAAGGTTGAGCCCGAAAAGCCATTGAAAATTGAGCCCCTCAAAACTACAAGAATGCCTCCTGACGTATTCGAAGGAATAATTCGCCAAGCAGTGGCAAAGGCTCTTGCGATTGCTGAAGGGTACAAGGCTGAACAGGATGCTTTGAGAGAGATTGAGGATGAGAGAGAGATGGAAAATCAGAAAATGGTTGAGGAAGACGAGCTTGCAAAGGAAAGAGACCATGAAAAAGAGAAAAGAAGGAGAGAAGAAGAACAAGAGGCCAAGAGGGCCAAATTAGCTGAAGAAGATAGAAAGCTAGGTGAAAGCCTCATGAGGGCAGCAATTGATTTGCAACTCCTTGAGGAAGAGAAAAAGAGAAAGGAAGAGTTAAAGGAAGATGAAAAAAGAAGGAAAGAAGCTGAAGACTTCCTTGTAGCTTTTGAGCCACTCCACAAGGCTCAAAGTGAAGCTGAAGTTCTGCAAGGGAGGGTAGAAGAAGAGGCCCAACAGGGGCCAAGAGAAGAAAATCCAGAAAAAGAGAAAGAAAGAGAAGTAGAGGAAGAAGGACAGAATGCGACCACATCTGGGCTACATTCTGAAGAAGGCCTAGCCGAGGCCACCATTGATCAGCCAGCTTAAGAGGTTTTTGAGCCTCAATTCAAGAATGACCCACCAGCAGTTGACAACACCTCTTCGGGAGAGAAGAGGGATGAAGAGGAAAAAGAAGATGAGGAGGCCGAGACCTCCACTAACTCTGATATTGAATCCGATTCAGAGATAAGGGAACTAGATGGCGACCAAGTTCCTATCTCTGGAGCATTGAGAAGAAAGAGGAAGAGAGAGATACAGGCTGAGAGGAGGACAAGGAACAAAAATGACCCGATATTTGCAATGAGGCCGAGGACTAGGTCCATGGACACCTCTCTTGCAGTTCCTCCTACCATCTCACCCACCAACCAAAAGTGCAAGTCACCGAAGGCTGCATCTCCTAAAAATCCATTCCTTGAGGTATTTAAAGATGTTAATTTTCAGGAACGGATGGAGATAATGAGAAATAGAGATTTCCTCAACGAGAAGGTCGTAAGCAGAGTTATCTTCCAGTACAAATGGCGGGACTTCTGTGCTCACCCTCAGGAGGCTGTAGTGCCATTAGTTCGAGAATTTTATGTCGACCTAAGGGAGTAG

mRNA sequence

ATGATCCGAGAGATGGGAGCCCAGAGATTTGCTGCCCTTGAAGAAGAAGCAAATAGGACCAAGCCCGTTGTTACCTATAGCGCAAGAAAGAGGAGCCCGAAGAAGGTTGAGCCCGAAAAGCCATTGAAAATTGAGCCCCTCAAAACTACAAGAATGCCTCCTGACGTATTCGAAGGAATAATTCGCCAAGCAGTGGCAAAGGCTCTTGCGATTGCTGAAGGGTACAAGGCTGAACAGGATGCTTTGAGAGAGATTGAGGATGAGAGAGAGATGGAAAATCAGAAAATGGTTGAGGAAGACGAGCTTGCAAAGGAAAGAGACCATGAAAAAGAGAAAAGAAGGAGAGAAGAAGAACAAGAGGCCAAGAGGGCCAAATTAGCTGAAGAAGATAGAAAGCTAGGTGAAAGCCTCATGAGGGCAGCAATTGATTTGCAACTCCTTGAGGAAGAGAAAAAGAGAAAGGAAGAGTTAAAGGAAGATGAAAAAAGAAGGAAAGAAGCTGAAGACTTCCTTGTAGCTTTTGAGCCACTCCACAAGGCTCAAAGTGAAGCTGAAGTTCTGCAAGGGAGGGTAGAAGAAGAGGCCCAACAGGGGCCAAGAGAAGAAAATCCAGAAAAAGAGAAAGAAAGAGAAGTTTTTGAGCCTCAATTCAAGAATGACCCACCAGCAGTTGACAACACCTCTTCGGGAGAGAAGAGGGATGAAGAGGAAAAAGAAGATGAGGAGGCCGAGACCTCCACTAACTCTGATATTGAATCCGATTCAGAGATAAGGGAACTAGATGGCGACCAAGTTCCTATCTCTGGAGCATTGAGAAGAAAGAGGAAGAGAGAGATACAGGCTGAGAGGAGGACAAGGAACAAAAATGACCCGATATTTGCAATGAGGCCGAGGACTAGGTCCATGGACACCTCTCTTGCAGTTCCTCCTACCATCTCACCCACCAACCAAAAGTGCAAGTCACCGAAGGCTGCATCTCCTAAAAATCCATTCCTTGAGGTATTTAAAGATGTTAATTTTCAGGAACGGATGGAGATAATGAGAAATAGAGATTTCCTCAACGAGAAGGTCGTAAGCAGAGTTATCTTCCAGTACAAATGGCGGGACTTCTGTGCTCACCCTCAGGAGGCTGTAGTGCCATTAGTTCGAGAATTTTATGTCGACCTAAGGGAGTAG

Coding sequence (CDS)

ATGATCCGAGAGATGGGAGCCCAGAGATTTGCTGCCCTTGAAGAAGAAGCAAATAGGACCAAGCCCGTTGTTACCTATAGCGCAAGAAAGAGGAGCCCGAAGAAGGTTGAGCCCGAAAAGCCATTGAAAATTGAGCCCCTCAAAACTACAAGAATGCCTCCTGACGTATTCGAAGGAATAATTCGCCAAGCAGTGGCAAAGGCTCTTGCGATTGCTGAAGGGTACAAGGCTGAACAGGATGCTTTGAGAGAGATTGAGGATGAGAGAGAGATGGAAAATCAGAAAATGGTTGAGGAAGACGAGCTTGCAAAGGAAAGAGACCATGAAAAAGAGAAAAGAAGGAGAGAAGAAGAACAAGAGGCCAAGAGGGCCAAATTAGCTGAAGAAGATAGAAAGCTAGGTGAAAGCCTCATGAGGGCAGCAATTGATTTGCAACTCCTTGAGGAAGAGAAAAAGAGAAAGGAAGAGTTAAAGGAAGATGAAAAAAGAAGGAAAGAAGCTGAAGACTTCCTTGTAGCTTTTGAGCCACTCCACAAGGCTCAAAGTGAAGCTGAAGTTCTGCAAGGGAGGGTAGAAGAAGAGGCCCAACAGGGGCCAAGAGAAGAAAATCCAGAAAAAGAGAAAGAAAGAGAAGTTTTTGAGCCTCAATTCAAGAATGACCCACCAGCAGTTGACAACACCTCTTCGGGAGAGAAGAGGGATGAAGAGGAAAAAGAAGATGAGGAGGCCGAGACCTCCACTAACTCTGATATTGAATCCGATTCAGAGATAAGGGAACTAGATGGCGACCAAGTTCCTATCTCTGGAGCATTGAGAAGAAAGAGGAAGAGAGAGATACAGGCTGAGAGGAGGACAAGGAACAAAAATGACCCGATATTTGCAATGAGGCCGAGGACTAGGTCCATGGACACCTCTCTTGCAGTTCCTCCTACCATCTCACCCACCAACCAAAAGTGCAAGTCACCGAAGGCTGCATCTCCTAAAAATCCATTCCTTGAGGTATTTAAAGATGTTAATTTTCAGGAACGGATGGAGATAATGAGAAATAGAGATTTCCTCAACGAGAAGGTCGTAAGCAGAGTTATCTTCCAGTACAAATGGCGGGACTTCTGTGCTCACCCTCAGGAGGCTGTAGTGCCATTAGTTCGAGAATTTTATGTCGACCTAAGGGAGTAG

Protein sequence

MIREMGAQRFAALEEEANRTKPVVTYSARKRSPKKVEPEKPLKIEPLKTTRMPPDVFEGIIRQAVAKALAIAEGYKAEQDALREIEDEREMENQKMVEEDELAKERDHEKEKRRREEEQEAKRAKLAEEDRKLGESLMRAAIDLQLLEEEKKRKEELKEDEKRRKEAEDFLVAFEPLHKAQSEAEVLQGRVEEEAQQGPREENPEKEKEREVFEPQFKNDPPAVDNTSSGEKRDEEEKEDEEAETSTNSDIESDSEIRELDGDQVPISGALRRKRKREIQAERRTRNKNDPIFAMRPRTRSMDTSLAVPPTISPTNQKCKSPKAASPKNPFLEVFKDVNFQERMEIMRNRDFLNEKVVSRVIFQYKWRDFCAHPQEAVVPLVREFYVDLRE

Homology

The following BLAST results are available for this feature:

BLAST of Spg032235.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032235.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032235.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032235.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	COILS	Coil	Coil	coord: 137..168
None	No IPR available	COILS	Coil	Coil	coord: 75..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 304..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..326

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg032235	Spg032235	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg032235.1-cds	Spg032235.1-cds-scaffold2:36129444..36129499	CDS
Spg032235.1-cds	Spg032235.1-cds-scaffold2:36129605..36130181	CDS
Spg032235.1-cds	Spg032235.1-cds-scaffold2:36130272..36130814	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg032235.1	Spg032235.1-protein	polypeptide