MELO.jh102145.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh102145.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr08: 10007073 .. 10017085 (-)
Sequence length1740
RNA-Seq ExpressionMELO.jh102145.1.t1
SyntenyMELO.jh102145.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTACTTTTCTCCCTTGAAGGTAGTACAGAGTTGACGCTTAAGTTCTCGGGTTCCGCGGCAGGCCTGGTTGGAGATAGCTTCCTTTCCTTGGGTAAGTCAACGGATGTCGCTTCCGACCTTTTTAAACGACTTCTACTAAAGTCATCAACTAAAATTTTCGTGTTTCGTTAGGTGGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTATCAGGTAAGGGTTTTCCTACTACTGGACCTGAGTCCAGGCTGAAAACGTAGTAATCCACAGGGGATTACACGTTATTGACTGTACTGAATAACTGTATGCGTGTTGACTGTTAAGTACTGTTATTATATTTGTCTGATGTAAATATACTGTGACTGCGAGTTGTGGATTGAGATTTTATGTTGATGGACCTTGAAGTTACGGTTCAGTATGTAGTAAAACACTGGTCTGGATATGGTTCATGGAATTTGGACGGGGATGGACAGTGAGTCCGGTTTTGGTTGGTTAGTCGATTGGACCTAGGGTTTTCCCTATTGGTGTGCGAATCGGTAATGCATATAGCAACTGAGGGTGTAGATGTTTAAACCTATACTATCTGACTGACAAAGCCTATGGCGGGACTGTGATATGAATGCCGTTGGGATGTGACTGATGTAGACAGTTTAGTTTGGACTGAGGGGTAACGGTTAGCTTCATCTATGGGGTAGTGTGCCTTACGGATATGTGCGTCCTTCGGGAGCACTAGACTGATATGTGCGTCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCGTCCTTCGGGAGCACTAGGCGATATGTGCGTCCTTCGGAGCACTAGACGATATGTGCATCCTTCGGGAGCACTAGATCGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGTTATGTAGGGTACCCCCGAATAGGAAGTTAACTGTTGTCCCCTAACGGGCCTAGTAGTGGGTCCCTTACTGGGTATGTTTATACTCACCCTTTCTCTTCTTTAACTTTTCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTGGTTTTCTTATCGCTTCCGCTATGTATTTTGTCAGAATATTTTGACTTGTGATTTTGAACTGGTGACTTGATATTTTATTTTGTGACTTTTTGATTATTTAAAATAGGGCCCGAAACTGTCTTTTGTAAGATTTTTAATGTTTTAATGAATCGTAACTGGTCCGTTTTAAATTTTATGTTGAATGGTCGAGTTTTGGTGTTTGGTAGTGACCTCAGCTTAGTCCGGAAAGTTGGGTCGTTACAATTAGACTTGAACATGGATTTTGTATGTTTGTATTATGGGTTGGAAAAATTACATAAATTTTCTTTTCTTCCATCTTCGTCTGTTTCTTTTCTTCTTTTTTCTTTTCAAACTGTTATTTGGTTCATTGTGTATTATTTAGATTGGAGTAGCCAAATAAACGATAGTGTAAAAAAAGTAAAGGATAGTGTAAAAAAAATTATCATGTAGACAAATCTAAAGGATCGTGTACCAAAAGAATTAAAAAATAAATCTAAACAATCGTGTACCATATTCTAAGTAAAATCTAAATGATCGTGTACCAAATTTTGAAAAAAAATCGTTTAGCCAAATATAAATGATTGTGTACCAGATTTTGAGTCAAATCTAAATGCTCGTGTACCATATTTTGAGCCAAATCTAAACGATCGTGTACCATATTTTAAAAAACAAAATCGTTTAGCCAAATCTAAATGATTGTTTACCATATTTTGAAAAAAAAATCGCTCAGCCAAATATAAACGATCATGTACCAAATTTTGACGTAAATCTAAATGATCGCGTACCAAATTTTGAGCCAAATCTAAACAATAGGGTACCAAATTTTGAGCCAAATCTAAACGATCGTGTACCATATTTTGAGTCAAATCTAAAAAATTGAAAAAAAAATTGTTTTATAACATTTGAAGGATAAATACAATTTTTTGTTTATGTTATTCTTTTTATTTGTGCAGTAGAACTTCTTCGTATTAAGTGATATAAAGTACTTTTTGATAATTTTCATTTTTATGTTTACAGGACATAAATTTTTATTAAATGTTTAATTGTATTCTCTTCCATCTGTTCAGATTGTATGTTTTTTATATAGCTTCTAGTACATACTAGTAGTAGATTTTATGTAGCTTCCAATACCTTGAATCACAGAGTTTGACTGCTTAGACTTTTCTATGATTTTAGTCAGTTCTACCAGAGATTCCTTGTCTTTTTGTCATTGATTTTTATTGATGTATACCTGTTGTGTATTACTTCACATAATATTTTTTTTTGTTTCCCTTCATTAAAGGCCATCTAACTTTCCCCATCTTCCTCTATATATACACTATGTTTCCTCCTTTCATTTATGACTTTCACTTCTCTATCACTGCATTCTTATCTCTATTTATATCTTCTCCTTTGTAAGTGCCTTTTTTGTTCTCATTCTCTTTTCAATCTGCCTTGTTTTTCAAATTAATTCATTCCCCTGTTCTATTCATGTGCTTCTGCAATTATCTTCTGTCCTCCTTTCTCACTTATGAACTGTTTTGTATGTCTTTATATTCATCTATTGTATTGATGTTTACATTATATTTAACATGACATGTATTCCATAGTAAATAGGGATATTTACCAAATTAGTAAGTATAGGGTTTTAGTAAGTTCATAATAAGCTTTAATTAGAGATTTCAGATAATGTATATCGATATTGTACTAATTCACTTAGTACATATTTTATAGGAAAGTTACATACTTTGTAATGGATCAACAAACTCTTCTTGCCATCTTAACCGCGTTCACGTCGGCCCAACATCAGATGTTACTAAAATTTCAAGCTACTAATGAACGACAGTAGGCGTATCATGCATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGCCAAAGCACGCGCATGGACAGGCAAACATTCGCAATTCTATGACATTTACTTCGGGCTGTTTCTGGTCTTTCGTCGATCGAGATTGTTGATGTTGAGGAAATGATAGCAATGTTCTTGGACGTCCTTGCCCATGATGTGAAGAATCACATCATTCAAAGGGAATTTGTAAGGTCCGATGAGACAGTATCTTAGCATTTTAATCTCGTACTGTTGGCTGTAGTTCGACTATACGACGAGTTGATAAAGAGACCTGTTCTAGTAACAAACAACTGCAATGATCAACGTTTGAAGTGTTTCGAGGTGGGCATGGTACAAGTTTAATGTATTTGAGCTTTAGGCACGTGGCACTTATTTCAACGTGTTTATTTAAACCTACAGAATTGCCTTGGCGTGTTAGACGAGACGTACATAAAGGTGAACGTCTCCACAACAGATCGGCCTACATTTTGAACCCGTAAGAGAAAAATTTCCACAAACGTATTGGGCGTCTGCACCACGAAAGGGGATTTCGTTTATGTCATCGCCGGTTGGGAAGGATCCGCGACAGACTCGTGGATTCTACATGATGCCATTGCACGAGAAAATGGACTACAAGTGTCAAAGGGTATTGTTTATTTATAATCAAACAACGCCAATTTTTACTTACATATTCAAAGCGCATAAACGAATGGTTTTAATAACAGGATATTATTATCTATGCAATACAGGTTATCCAAACACGGAGGGATTTCTTGGCCCGTACAGCGACCAGCGGTACCACTCGCAAGAGTGGCGTGGTGCTGGAAATGCACCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAACTGTCGTTGGGCCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTTCTTCACAATTTGATAAACGGAGAAATGACATATTACGACGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACATACGAGTGGTCTCAGTGGCACGACGAACTAACTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAGATAAGAAAATTTTAGATTAGAAGTCATCGGTTGTATGCACATTTTATTGACCTGTAAAATGTATTTTTGCATATGAAATGTACGTGTGTCATTTGTTTGTGACTGTTAAATGTGAAATTATGATATTACTAACATACTCCATATATTTCTTGTAATTTGTCATTCTCAGTATGTCAACCTCAACCCGTGCCCCAAGGCATGTCTGGACGAAGGAGGAGGAGGGTATTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCTGATAATGGTACGTTCTGACCAGGTTACCTAGCCCAGTTGGTACGCATGATGACAGAGAAACTACCTGGATGTCGTGTCTGCGAAATGACTATAATTGACTGTAGAATAAAGAAACTGAAGCAGACATTCCATGCCACCGCTGACATGCGAGGGCCAGCGTGCAGTGGCTTCGGGTGGAATGATGAAGAGAAATGCATAATTGTGGAGAAAGAATTATTTGATAAATGGGTTAGGGTAAGGAAAATAATATAAACGTCACATAACGTTCGCAATGTACATTTACTTCAAAAATTTTCTATCAGTACTCATATGTGATCCTTTTTTTCCCCGCAGTTGCATCTTGCAGCGAAAGGACTCCTGAACAAACCGTTTCCATATTACGACGAACGTACATATGTGTTCGATCGCAAAAGGACGACGGGTCGATTCGCTGAGACATTTGTCAACGTGGGATCTAACAAGTCTGGTGGGTACGAGGGATTTGACATGGCGGATGGAAACGAGGAGTTCCCGCCCATGTACAGCCAAGGGATTGACATGTCGCAGGATGATGTACGCGCATCACGACCTTTTCGTGCTTCAGAAGGTAGAAACGGATCGAGTGGATCCTAGAGGAAGAGAGAAAGTCAGCGAAAGGTGGATGTTAAAGGCATACATCTGGCACTCGACTAAACAAACGAGCAACTCAAGATGATTGCGGAGTAGCCTACACACACCCTTGCCAATGACAACCATGTTCGCACGGAATTCTTTCGCATATTGCGTGAGATGTTGGAATTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTAGGGGTTTCATACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACAAGACATGACGAGATAGTTTACGTTTGTACTGACCTGGGTAACTTCTTATTTGCTTACTTTTTTTCTGTATGATATTGACTGTTTATGTTTTTGCTATTGTAGACAACTATTTTTTCGTTCATAATGTTTATTTAAAATTAATAAAAATAGTAACAATTTCACTCAGGCGTTATACCAGGTAATTACATATGTTCAAAATAGGTGGACATCGCCAATTACAAATAGGAAATAATATATTTTTCTTTCTAAAAAATGAATTTTAATAAATTTTTCACAATATGTTTAGAAATTAATTCCAAATTGAACAATTGTCTTTACTAATTTAATAACATTACACATACAATAAATTTGTTTGCAATAAGACAGGTTCGACGCTTTTGTAAAAAAGTATTCAATAAGAATTTTTTTATCATATTTACAATCTCATTTAAAAAATATTTTACTACATAAAAAAAATTATTAACCCAACTCATATAACACTTTCCCCAAATAAATTTTATCATAAATTTCACATAAACCTACCTACCTAACCCTTCCCCCAAAAACATCTTATCATAAATTTTCCATAAAACTACCCACCTAACCCTTCCCCCAAACACATCTTATCATAAAATCCTCATAACCCTTCCCCCAAACACCTCTTATCATAAAACTAGATTTCTAAACTCTTCCCTCAAACAAGGATTATGATAAAACTAGGTTTATCATAACACTAGTTTTATCATAACACTAACCCTTCCATAAATCAACTCTTCCCCCAAACGCACCCTAAGGTTTTATCCTCAGCTTACTTTGATTTGAGAATAAAAAATTTGATGATTTTTTTTTGATAAAATTTGGAACCGGTTTTTTAATTTAAGACAAAGATGAGGTTTCTAGCATACCCTAATTTGTTCTTAGATGTACAAGAATTTGGAATGACCAATTTTAATTTTGAGATAAAATGATCAAATTTAATTTTGAGATAAATATGAGATCTCAATCTTAGAATAAAGTTAGATTTATGACTCCATTTTAAATTTGAGATAAAAAAGGGGGTAAAATCTAAATTTTAATTTTAAATATGCTTAATTCTCACAAAGTGGAATTCAAGATTTTATTCCAAAATAAAATAACATAAGATAATAGAATTTTAATTTTATTTAAAAATATTAAAATATGTTTAAATATCTCAAAGGTGAAATCCGAGATTTTATTCCAAAATAAAATAACATAAGATAATTGAATTTTAATTTTATTTAAAAAATTAAACTGTTAAAATATGTTTAAATATCTTAAAAGTGAAATTCGAGATTTTATTTCAAGATAAAATAACATAAGATAAGGGATCTTTTCAAAAATATAAAAAAGCGGCAAAATATTTACACTCTATAGAACAATTCCAAAAATGGAAAAAGCCCAGAGGCCCACTGTGTAAAATACCAAAAATGCCCCGTCAACCACGACGTTAATAACACGCGCATAATATATTTGTGATTTATACGAAATCGCTTAGATATGGTTCAATATATACGTGATCGTTTAGATATGGCTATAATTTATACGTGATCGTTTAGATATGGCTACAACGCGATCGTTTAGACATGGCTACAATATATACGCGATCGTTTAGATATGGCTATAATTTATAGACGATCAATTAGATATGACTACAACGCGATCATTTAGATATGACTACAATTTATACGCGATCATATAGATATGGCTACAATTTATACGCTATCGTTTAGATATGGCGACAATTTATCTTTTCAATTCCATCATTTAATTTTGTTACACGATCGTTTAGATTTAGGGACCCAAATCTAAATGATTTTTTTAAAATTTGGTACACGATTTTTTTAATTCTTTTGCTAGACGATCGTTTAGATTTCTTTACACGATCGTTTACTTTTTTTACATGATCGTTTACTGTTTTTTTCACGATCGTTTACATTTGGCTACTCCAATTCAAATGAATTTTTTTTCAAAATTTTTTATACACACGATTGTTTACTTTTTTTAAACGATTGTTTACATTTGGCTACTTCAATCTAAATGATTTTTTTTCAAGATTCTTTATACAAAATCTTTTATTTTTTTTACACAATCATTTTCTTTTTTTTTTACACGATCGTTTACATTTGGCTACTCCAATCTAAATGATTTTTCTTCAAGATTCTTTATACACGATCTTTTAGGTTTTGCTATTTTTTTGTACACAGTCTTATACATATTAGATTTTGTTGTACACAGTCTTATACAAAGTCGTTTAGATTTAGTTACCTCAATGAAAACGCGTAACAAAAGAAAAGAAGAAAGACGATGGAAAGAAATCGAAGTAAAAAAAAAAAGGAAAAGAAGAAAAACGATGGAAAGATTAAATGACGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCATAAAAGAAAAAGAGGAAAGAAGAAAGACGAAATCGCAGAGGAAGAACGAAGAAGACGAAATAGAGGAGAAAGACGAATCGCGAGGAAGAAAGAAAGATGTAAAGGAAAATCTGGAATATTTAAAAAATGGCTAACTTTATGGGCTTTGTTACACGAGCCGTAAATAGTTTGGTGTTTTATTACATTTACAATAGTTTCCCATAAGATAATTCAATTTTAATTTTATTTTATTATTTAATCATTACAAATCCTCTTAGGAATTGGATTTGTTAACCTTATAAATAGACTCATACCTTGATCATTCTTTCCTCATCAAGCAGAACAAAGGAATGAGAGAAAAAACTTCTCTCCTCCCTCTCTTTTTTTCTTTAATTCTTCTTTTTTTATCTTCAGGTTTAGTAGTTGGTAATTTGTTGCACCAACTTGAAGTTCTATCAAAGGTTAAGTCCCTTTTTTTTTTTTGCAAGCCTTTGAAGGTCCCATGCAAGTATATATGAGGTTACAGACTCCTCAACATCCTACTTCTTTCAACGTCAACTTCTGAGGTTTATTCAGGATAGACGATGCAACTCTATCATGATGCCCTCTTATTTCTTAGGGTTTGTTCATGATAGACGATGCAACACTATCATGACGCCCTCCTCCGTCCAATTTGCTTTCATATATTCTTTGTTCTAAGACCATGTCATCAGCACTAACTTGCTTCTGGTGATCTTATTTTGCAGAAAATGGTTTACTTCACAGAACAATTCTTGTCTAGATTCTTGTCTAGAGTCCGACACCTCGTAGTATTTTTTGATAGAAATCAACCAAGAGAAGATGAACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGCCTCTTTTGCAGATCATTGGCCACACTTAGACAACAACTCAATTTATCTCAGGGAAAAACTGCATGAGTCCTACAGTCTTCTATCCATAACGAGGCTCCTAATTCTGACAGAGTTCTCACTCTTGAATAACGTTAATTGAAGGCCAAACACGTTGGGGTGTTGTGACTAAGGTCCCCTTTTTTTATGAGATGACAATGAAACATGATTTTTCTTTATTTGTGATTGAACTTAAAGTGAACTTTAAGCTGTCGTACCCTTTTTATAACATAGGAATTAAGTCATAACATAGTTCAATTGATTTTTTTTTACTGTATAATGACGTTAAACATAAAATTTCTTGAGAAACTTGTCGTTGATTGGGCCAATTTTTAATCCACCTCAATCAACAATCTTGTATACGCCATTTGTGTAAACTTCTTTGACAATGTAAGGTCCATCCCATTTAGGTGTGAACTTATTTTTTCACACCCTCTTCCGAACTACCTGCTACCTTAGACCGAAAGATGGCATGAAGCCGACGAACAACGCTTTTCTGTACCTATATCTGTCAACTCTGCTTAAAACTTTCATGTGATGAACTTGCCAATCTAGTATATAAACTATTATACATGCAACAAAACACAGCGGATCCTAGGCTAGTCAAACACATACATGAAGTGTACCTCAAAATTTACTGATTTCACGAGTAAACCTAAAGACACCTTAATCAAAATATAACCAACAAAAATTTACACAACTACAGCTCCTAAAGCTTATACAAACTGTGGAGTATCTATAACATACAAGGGTGTATATACATCATAACACAACAGACTCTATGCCCAACTCAAAACACATACTGGCAATCGATAACGGAGCTTCAGCAGACTAAAACAGTCTATCAGGCACCGGAAACTCGATCTCTACCTGGAAAATGGGTAAAACATTTTGGAAAGAGTGAGCTATGAAGCTTAGTGAGTGACTTAGTTTAAAACTATGAATTAAAGATAAGAGCAAGTGAATACTTTACACATATAAATCTGTTTATATAAGTCGTAAAAGTAAACGTGTAGTAGTAAGAATAGCTTCCTCAAATACTCAGCATGTTCGTCACTGAAATCTAGCAAGGCATATCAAGTATATCGAAGCATTTTAACTAACATGACAAATCTACGTTGTGTAGGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGTCCGTCCAGCACTCCCATCGTCTTTGTCGTAGTGGGACCCGCCCAGCACTCACGACAGCATTGTTGTTACGGAGTACACTCAACGTCAACAACGGAATTTAA

mRNA sequence

ATGGCCCTACTTTTCTCCCTTGAAGGTAGTACAGAGTTGACGCTTAAGTTCTCGGGTTCCGCGGCAGGCCTGGTTGGAGATAGCTTCCTTTCCTTGGGTGGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTATCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTGTTCGACTATACGACGAGTTGATAAAGAGACCTGTTCTAGTAACAAACAACTGCAATGATCAACGTTTGAAGTGTTTCGAGGTGGGCATGAGAAAAATTTCCACAAACGTATTGGGCGTCTGCACCACGAAAGGGGATTTCGTTTATGTCATCGCCGGTTGGGAAGGATCCGCGACAGACTCGTGGATTCTACATGATGCCATTGCACGAGAAAATGGACTACAAGTGTCAAAGGGTTATCCAAACACGGAGGGATTTCTTGGCCCGTACAGCGACCAGCGGTACCACTCGCAAGAGTGGCGTGGTGCTGGAAATGCACCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAACTGTCGTTGGGCCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTTCTTCACAATTTGATAAACGGAGAAATGACATATTACGACGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACATACGAGTGGTCTCAGTGGCACGACGAACTAACTGAATCGATGTTCACAGATTGGCAGTTGCGTTACCTAGCCCAGTTGGTACGCATGATGACAGAGAAACTACCTGGATGTCGTGTCTGCGAAATGACTATAATTGACTGTAGAATAAAGAAACTGAAGCAGACATTCCATGCCACCGCTGACATGCGAGGGCCAGCGTGCAGTGGCTTCGGGTGGAATGATGAAGAGAAATGCATAATTGTGGAGAAAGAATTATTTGATAAATGGGTTAGGTTGCATCTTGCAGCGAAAGGACTCCTGAACAAACCGTTTCCATATTACGACGAACGTACATATGTGTTCGATCGCAAAAGGACGACGGGTCGATTCGCTGAGACATTTGTCAACGTGGGATCTAACAAGTCTGGTGGGTACGAGGGATTTGACATGGCGGATGGAAACGAGGAGTTCCCGCCCATGTACAGCCAAGGGATTGACATGTCGCAGGATGATGTACGCGCATCACGACCTTTTCGTGCTTCAGAAGGTTTAGTAGTTGGTAATTTGTTGCACCAACTTGAAGTTCTATCAAAGAAAATGGTTTACTTCACAGAACAATTCTTGTCTAGATTCTTGTCTAGAGTCCGACACCTCGTAGTATTTTTTGATAGAAATCAACCAAGAGAAGATGAACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGCCTCTTTTGCAGATCATTGGCCACACTTAGACAACAACTCAATTTATCTCAGGGAAAAACTGCATGAGTCCTACAGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGTCCGTCCAGCACTCCCATCGTCTTTGTCGTAGTGGGACCCGCCCAGCACTCACGACAGCATTGTTGTTACGGAGTACACTCAACGTCAACAACGGAATTTAA

Coding sequence (CDS)

ATGGCCCTACTTTTCTCCCTTGAAGGTAGTACAGAGTTGACGCTTAAGTTCTCGGGTTCCGCGGCAGGCCTGGTTGGAGATAGCTTCCTTTCCTTGGGTGGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTATCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTGTTCGACTATACGACGAGTTGATAAAGAGACCTGTTCTAGTAACAAACAACTGCAATGATCAACGTTTGAAGTGTTTCGAGGTGGGCATGAGAAAAATTTCCACAAACGTATTGGGCGTCTGCACCACGAAAGGGGATTTCGTTTATGTCATCGCCGGTTGGGAAGGATCCGCGACAGACTCGTGGATTCTACATGATGCCATTGCACGAGAAAATGGACTACAAGTGTCAAAGGGTTATCCAAACACGGAGGGATTTCTTGGCCCGTACAGCGACCAGCGGTACCACTCGCAAGAGTGGCGTGGTGCTGGAAATGCACCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAACTGTCGTTGGGCCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTTCTTCACAATTTGATAAACGGAGAAATGACATATTACGACGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACATACGAGTGGTCTCAGTGGCACGACGAACTAACTGAATCGATGTTCACAGATTGGCAGTTGCGTTACCTAGCCCAGTTGGTACGCATGATGACAGAGAAACTACCTGGATGTCGTGTCTGCGAAATGACTATAATTGACTGTAGAATAAAGAAACTGAAGCAGACATTCCATGCCACCGCTGACATGCGAGGGCCAGCGTGCAGTGGCTTCGGGTGGAATGATGAAGAGAAATGCATAATTGTGGAGAAAGAATTATTTGATAAATGGGTTAGGTTGCATCTTGCAGCGAAAGGACTCCTGAACAAACCGTTTCCATATTACGACGAACGTACATATGTGTTCGATCGCAAAAGGACGACGGGTCGATTCGCTGAGACATTTGTCAACGTGGGATCTAACAAGTCTGGTGGGTACGAGGGATTTGACATGGCGGATGGAAACGAGGAGTTCCCGCCCATGTACAGCCAAGGGATTGACATGTCGCAGGATGATGTACGCGCATCACGACCTTTTCGTGCTTCAGAAGGTTTAGTAGTTGGTAATTTGTTGCACCAACTTGAAGTTCTATCAAAGAAAATGGTTTACTTCACAGAACAATTCTTGTCTAGATTCTTGTCTAGAGTCCGACACCTCGTAGTATTTTTTGATAGAAATCAACCAAGAGAAGATGAACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGCCTCTTTTGCAGATCATTGGCCACACTTAGACAACAACTCAATTTATCTCAGGGAAAAACTGCATGAGTCCTACAGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGTCCGTCCAGCACTCCCATCGTCTTTGTCGTAGTGGGACCCGCCCAGCACTCACGACAGCATTGTTGTTACGGAGTACACTCAACGTCAACAACGGAATTTAA

Protein sequence

MALLFSLEGSTELTLKFSGSAAGLVGDSFLSLGGSVERGFRSRGITEYQVGVQRGADRREAGRMREGHMDASVRLYDELIKRPVLVTNNCNDQRLKCFEVGMRKISTNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLRYLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSGGYEGFDMADGNEEFPPMYSQGIDMSQDDVRASRPFRASEGLVVGNLLHQLEVLSKKMVYFTEQFLSRFLSRVRHLVVFFDRNQPREDELSLLVEKPWAASFADHWPHLDNNSIYLREKLHESYRYTQYNNVYKLYDVVGSVQHSHRLCRSGTRPALTTALLLRSTLNVNNGI
Homology
BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 570 bits (1469), Expect = 6.69e-195
Identity = 292/435 (67.13%), Postives = 319/435 (73.33%), Query Frame = 0

Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE----------------VGMR--------KIS 130
           A +RLY+ELIKRPV VT+NCNDQR KCFE                 G R        +I+
Sbjct: 82  AVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIA 141

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC  KGDFVYV+AGWEGSA DS IL DAI++ENGLQV KGY        PN EGF
Sbjct: 142 TNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAGYPNAEGF 201

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRGA NAPTNAKEYFNMKHSS RNVIERAFGVL  RW ILRGKSYYP
Sbjct: 202 LAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTILRGKSYYP 261

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           LQVQCRTILAC  LHNLIN EMTY +DV++ DEGDSTYATT A+EDI YI+TT EWSQW 
Sbjct: 262 LQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWR 321

Query: 311 DELTESMFTDWQLR-------------------------YLAQLVRMMTEKLPGCRVCEM 370
           D+L  SMFTDWQ R                         YLAQLVRMM EKL GC+V   
Sbjct: 322 DDLATSMFTDWQFRGGDSCGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRAT 381

Query: 371 TIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNK 430
           T+IDCRIK LK+TF A A+M GPACSGFGWNDEEKCI+ EKELFD WVR   AAKGLLN 
Sbjct: 382 TVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNN 441

Query: 431 PFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEGFDMADGNEEFPPMYSQGIDMS 447
           PFPYYDE TYVF R R TGRFAETF +VGSN+  GGY+ FDM DGNE+FPP+YS+G+D+ 
Sbjct: 442 PFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDIL 501

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: TYK03086.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 528 bits (1360), Expect = 1.41e-180
Identity = 259/348 (74.43%), Postives = 281/348 (80.75%), Query Frame = 0

Query: 107 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQR 166
           +NVLGVC TKGDFVYV+A WE SA DS IL DA++RENGLQVSKGY NTEGFL PY  QR
Sbjct: 23  SNVLGVCDTKGDFVYVLANWEESAADSQILRDALSRENGLQVSKGYQNTEGFLAPYRGQR 82

Query: 167 YHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTI 226
           YH Q+W G GNAPTNAKEYFNM HSS RNVIERAF VL  RW IL GKSYYPLQVQC TI
Sbjct: 83  YHLQKWHGGGNAPTNAKEYFNMSHSSVRNVIERAFDVLKDRWTILNGKSYYPLQVQCHTI 142

Query: 227 LACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMF 286
           LACC LHNLIN EMTY DDVD VDEGDS YATT A+EDI YI+TT EWSQW DEL ESMF
Sbjct: 143 LACCLLHNLINREMTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMF 202

Query: 287 TDWQLR-------YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACS 346
           T+WQL        YL QLV MM EKLP C+V   T+ID RIK LK+ F A A+MRGPA S
Sbjct: 203 TNWQLYNGTFRPGYLDQLVHMMAEKLPECQVRATTVIDYRIKTLKRIFQAIAEMRGPAYS 262

Query: 347 GFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFV 406
           GFGWN+EEKCII EKELFD WVR H AAKGLLNK FPYY+E TYVF R RTTGRFAETF 
Sbjct: 263 GFGWNNEEKCIIAEKELFDNWVRSHPAAKGLLNKLFPYYNELTYVFSRDRTTGRFAETFA 322

Query: 407 NVGSNKSGGYEGFDMADGNEEFPPMYSQGIDMSQDDVRASRPFRASEG 447
           ++GSN+ G Y+ FDM DGN+EF P+YSQG+D+SQDDVRASRP RASEG
Sbjct: 323 DLGSNEPGRYDRFDMGDGNKEFLPVYSQGMDLSQDDVRASRPSRASEG 370

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: KAA0064030.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26181.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 457 bits (1175), Expect = 2.40e-152
Identity = 240/377 (63.66%), Postives = 261/377 (69.23%), Query Frame = 0

Query: 73  VRLYDELIKRPV----------LVTNNCNDQRLKCFEVGMRKISTNVLGVCTTKGDFVYV 132
           VRLY+ELIKRPV           +  N        F     +I+TNVLGVC TKGDFVYV
Sbjct: 41  VRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFRTRKGEIATNVLGVCDTKGDFVYV 100

Query: 133 IAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRG 192
           +A WEGSA DS IL D ++RENGLQV  GY        PN EGFL  Y DQRYH QEWRG
Sbjct: 101 LASWEGSAADSRILRDVLSRENGLQVPNGYYYLCDAGYPNAEGFLALYRDQRYHLQEWRG 160

Query: 193 AGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHN 252
           A NAPTN KEYFNMKHS  RNVIE AFGVL  RWAILRGKS                   
Sbjct: 161 AANAPTNPKEYFNMKHSLARNVIECAFGVLKGRWAILRGKS------------------- 220

Query: 253 LINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR-- 312
               EMTY +DVD+VDEG STYATT A+EDIHYI+TT EWSQW DEL +SMFTD QL   
Sbjct: 221 ----EMTYCEDVDDVDEGGSTYATTTASEDIHYIETTNEWSQWRDELAKSMFTDSQLHNG 280

Query: 313 -----YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEE 372
                YLAQLVRMM EKLPGC+V   T+IDCRIK LK  F   A+MRGPACSGFGWNDEE
Sbjct: 281 TFRPGYLAQLVRMMAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEE 340

Query: 373 KCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSG 424
           KCII EKELFD WVR H AAKGL+NKPFPYY+E TYVF   R T RFAETF +VGSN+ G
Sbjct: 341 KCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFADVGSNEPG 394

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 434 bits (1116), Expect = 3.07e-141
Identity = 235/445 (52.81%), Postives = 282/445 (63.37%), Query Frame = 0

Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE------------------------VGMRKIS 130
           A +RL++EL+K+P  V N C DQR + FE                            +++
Sbjct: 110 AVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVA 169

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC TKGDFVYV+AGWEGSA DS IL DA++R N L+V KGY        PN EGF
Sbjct: 170 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGF 229

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRG  NAP+ +KE+FNMKH S RNVIERAFGVL  RWAILRGKSYYP
Sbjct: 230 LAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYP 289

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           ++VQCRTILACC LHNLIN EMT +D  DN+DE DST+ATT A +DIHYI+T+ EWSQW 
Sbjct: 290 VEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWR 349

Query: 311 DELTESMFTD-----------------------------WQLR-------YLAQLVRMMT 370
           D L E + T                              W+         YL QL RMM 
Sbjct: 350 DNLAEEIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMA 409

Query: 371 EKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVR 430
            K+PG  +   TI D RIK +K+ FHA A+MRGP CSGFGWNDE+KCI+ EKE+FD W  
Sbjct: 410 FKIPGSNIHASTI-DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS- 469

Query: 431 LHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSGGYE-GFDMADGNEEF 446
            H AAKGLLNK F +YDE +YVF + R TG  AE+F ++GSN   GY+ G   A  + +F
Sbjct: 470 -HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 529

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: KAA0051849.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 402 bits (1032), Expect = 9.71e-131
Identity = 222/387 (57.36%), Postives = 246/387 (63.57%), Query Frame = 0

Query: 73  VRLYDELIKRPVLVTNNCNDQRLKCFE-VGMR----KISTNVLGVCTTKGDFVYVIAGWE 132
           +RLY ELIKRPV VT+NCNDQR KCFE +G+R    +I+ NVLGVC  KGDFVYV+AGWE
Sbjct: 109 LRLYKELIKRPVPVTSNCNDQRWKCFEEIGLRTRKGEIAINVLGVCDMKGDFVYVLAGWE 168

Query: 133 GSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRGAGNAP 192
           GSA DS IL DAI+RENGLQV KGY        PN EGFL PY  QRYH QEWR A NAP
Sbjct: 169 GSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYIGQRYHLQEWRVATNAP 228

Query: 193 TNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLINGE 252
           TNAKEYFNMKHSS RNVIERAFGVL  RWAILRGKS                       +
Sbjct: 229 TNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKS-----------------------K 288

Query: 253 MTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR------- 312
           MTY DDV++ DEGDSTYAT  A+EDI YI+T  EWSQW D L ESMFT+WQL        
Sbjct: 289 MTYCDDVEDEDEGDSTYATITASEDIQYIETINEWSQWRDNLAESMFTEWQLHNGTFRSG 348

Query: 313 YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIV 372
           YLAQLVRMM EKLPGC+                                           
Sbjct: 349 YLAQLVRMMAEKLPGCQS------------------------------------------ 408

Query: 373 EKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEG 432
                      H A KGLLNKPFPYYDE TYVFDR R T +FAETF +VGSN+  GGY+ 
Sbjct: 409 -----------HPAVKGLLNKPFPYYDELTYVFDRDRATDQFAETFADVGSNEPGGGYDR 419

Query: 433 FDMADGNEEFPPMYSQGIDMSQDDVRA 438
           FDM DGNE+FPP+YSQG+D+SQDD+ A
Sbjct: 469 FDMGDGNEDFPPVYSQGVDISQDDLEA 419

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 570 bits (1469), Expect = 3.24e-195
Identity = 292/435 (67.13%), Postives = 319/435 (73.33%), Query Frame = 0

Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE----------------VGMR--------KIS 130
           A +RLY+ELIKRPV VT+NCNDQR KCFE                 G R        +I+
Sbjct: 82  AVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIA 141

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC  KGDFVYV+AGWEGSA DS IL DAI++ENGLQV KGY        PN EGF
Sbjct: 142 TNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAGYPNAEGF 201

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRGA NAPTNAKEYFNMKHSS RNVIERAFGVL  RW ILRGKSYYP
Sbjct: 202 LAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTILRGKSYYP 261

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           LQVQCRTILAC  LHNLIN EMTY +DV++ DEGDSTYATT A+EDI YI+TT EWSQW 
Sbjct: 262 LQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWR 321

Query: 311 DELTESMFTDWQLR-------------------------YLAQLVRMMTEKLPGCRVCEM 370
           D+L  SMFTDWQ R                         YLAQLVRMM EKL GC+V   
Sbjct: 322 DDLATSMFTDWQFRGGDSCGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRAT 381

Query: 371 TIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNK 430
           T+IDCRIK LK+TF A A+M GPACSGFGWNDEEKCI+ EKELFD WVR   AAKGLLN 
Sbjct: 382 TVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNN 441

Query: 431 PFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEGFDMADGNEEFPPMYSQGIDMS 447
           PFPYYDE TYVF R R TGRFAETF +VGSN+  GGY+ FDM DGNE+FPP+YS+G+D+ 
Sbjct: 442 PFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDIL 501

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BY22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001930 PE=3 SV=1)

HSP 1 Score: 528 bits (1360), Expect = 6.83e-181
Identity = 259/348 (74.43%), Postives = 281/348 (80.75%), Query Frame = 0

Query: 107 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQR 166
           +NVLGVC TKGDFVYV+A WE SA DS IL DA++RENGLQVSKGY NTEGFL PY  QR
Sbjct: 23  SNVLGVCDTKGDFVYVLANWEESAADSQILRDALSRENGLQVSKGYQNTEGFLAPYRGQR 82

Query: 167 YHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTI 226
           YH Q+W G GNAPTNAKEYFNM HSS RNVIERAF VL  RW IL GKSYYPLQVQC TI
Sbjct: 83  YHLQKWHGGGNAPTNAKEYFNMSHSSVRNVIERAFDVLKDRWTILNGKSYYPLQVQCHTI 142

Query: 227 LACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMF 286
           LACC LHNLIN EMTY DDVD VDEGDS YATT A+EDI YI+TT EWSQW DEL ESMF
Sbjct: 143 LACCLLHNLINREMTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMF 202

Query: 287 TDWQLR-------YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACS 346
           T+WQL        YL QLV MM EKLP C+V   T+ID RIK LK+ F A A+MRGPA S
Sbjct: 203 TNWQLYNGTFRPGYLDQLVHMMAEKLPECQVRATTVIDYRIKTLKRIFQAIAEMRGPAYS 262

Query: 347 GFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFV 406
           GFGWN+EEKCII EKELFD WVR H AAKGLLNK FPYY+E TYVF R RTTGRFAETF 
Sbjct: 263 GFGWNNEEKCIIAEKELFDNWVRSHPAAKGLLNKLFPYYNELTYVFSRDRTTGRFAETFA 322

Query: 407 NVGSNKSGGYEGFDMADGNEEFPPMYSQGIDMSQDDVRASRPFRASEG 447
           ++GSN+ G Y+ FDM DGN+EF P+YSQG+D+SQDDVRASRP RASEG
Sbjct: 323 DLGSNEPGRYDRFDMGDGNKEFLPVYSQGMDLSQDDVRASRPSRASEG 370

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V9W9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001080 PE=3 SV=1)

HSP 1 Score: 457 bits (1175), Expect = 1.16e-152
Identity = 240/377 (63.66%), Postives = 261/377 (69.23%), Query Frame = 0

Query: 73  VRLYDELIKRPV----------LVTNNCNDQRLKCFEVGMRKISTNVLGVCTTKGDFVYV 132
           VRLY+ELIKRPV           +  N        F     +I+TNVLGVC TKGDFVYV
Sbjct: 41  VRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFRTRKGEIATNVLGVCDTKGDFVYV 100

Query: 133 IAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRG 192
           +A WEGSA DS IL D ++RENGLQV  GY        PN EGFL  Y DQRYH QEWRG
Sbjct: 101 LASWEGSAADSRILRDVLSRENGLQVPNGYYYLCDAGYPNAEGFLALYRDQRYHLQEWRG 160

Query: 193 AGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHN 252
           A NAPTN KEYFNMKHS  RNVIE AFGVL  RWAILRGKS                   
Sbjct: 161 AANAPTNPKEYFNMKHSLARNVIECAFGVLKGRWAILRGKS------------------- 220

Query: 253 LINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR-- 312
               EMTY +DVD+VDEG STYATT A+EDIHYI+TT EWSQW DEL +SMFTD QL   
Sbjct: 221 ----EMTYCEDVDDVDEGGSTYATTTASEDIHYIETTNEWSQWRDELAKSMFTDSQLHNG 280

Query: 313 -----YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEE 372
                YLAQLVRMM EKLPGC+V   T+IDCRIK LK  F   A+MRGPACSGFGWNDEE
Sbjct: 281 TFRPGYLAQLVRMMAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEE 340

Query: 373 KCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSG 424
           KCII EKELFD WVR H AAKGL+NKPFPYY+E TYVF   R T RFAETF +VGSN+ G
Sbjct: 341 KCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFADVGSNEPG 394

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 434 bits (1116), Expect = 1.49e-141
Identity = 235/445 (52.81%), Postives = 282/445 (63.37%), Query Frame = 0

Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE------------------------VGMRKIS 130
           A +RL++EL+K+P  V N C DQR + FE                            +++
Sbjct: 110 AVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVA 169

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC TKGDFVYV+AGWEGSA DS IL DA++R N L+V KGY        PN EGF
Sbjct: 170 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGF 229

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRG  NAP+ +KE+FNMKH S RNVIERAFGVL  RWAILRGKSYYP
Sbjct: 230 LAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYP 289

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           ++VQCRTILACC LHNLIN EMT +D  DN+DE DST+ATT A +DIHYI+T+ EWSQW 
Sbjct: 290 VEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWR 349

Query: 311 DELTESMFTD-----------------------------WQLR-------YLAQLVRMMT 370
           D L E + T                              W+         YL QL RMM 
Sbjct: 350 DNLAEEIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMA 409

Query: 371 EKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVR 430
            K+PG  +   TI D RIK +K+ FHA A+MRGP CSGFGWNDE+KCI+ EKE+FD W  
Sbjct: 410 FKIPGSNIHASTI-DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS- 469

Query: 431 LHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSGGYE-GFDMADGNEEF 446
            H AAKGLLNK F +YDE +YVF + R TG  AE+F ++GSN   GY+ G   A  + +F
Sbjct: 470 -HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 529

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UEC4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002780 PE=3 SV=1)

HSP 1 Score: 402 bits (1032), Expect = 4.70e-131
Identity = 222/387 (57.36%), Postives = 246/387 (63.57%), Query Frame = 0

Query: 73  VRLYDELIKRPVLVTNNCNDQRLKCFE-VGMR----KISTNVLGVCTTKGDFVYVIAGWE 132
           +RLY ELIKRPV VT+NCNDQR KCFE +G+R    +I+ NVLGVC  KGDFVYV+AGWE
Sbjct: 109 LRLYKELIKRPVPVTSNCNDQRWKCFEEIGLRTRKGEIAINVLGVCDMKGDFVYVLAGWE 168

Query: 133 GSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRGAGNAP 192
           GSA DS IL DAI+RENGLQV KGY        PN EGFL PY  QRYH QEWR A NAP
Sbjct: 169 GSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYIGQRYHLQEWRVATNAP 228

Query: 193 TNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLINGE 252
           TNAKEYFNMKHSS RNVIERAFGVL  RWAILRGKS                       +
Sbjct: 229 TNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKS-----------------------K 288

Query: 253 MTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR------- 312
           MTY DDV++ DEGDSTYAT  A+EDI YI+T  EWSQW D L ESMFT+WQL        
Sbjct: 289 MTYCDDVEDEDEGDSTYATITASEDIQYIETINEWSQWRDNLAESMFTEWQLHNGTFRSG 348

Query: 313 YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIV 372
           YLAQLVRMM EKLPGC+                                           
Sbjct: 349 YLAQLVRMMAEKLPGCQS------------------------------------------ 408

Query: 373 EKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEG 432
                      H A KGLLNKPFPYYDE TYVFDR R T +FAETF +VGSN+  GGY+ 
Sbjct: 409 -----------HPAVKGLLNKPFPYYDELTYVFDRDRATDQFAETFADVGSNEPGGGYDR 419

Query: 433 FDMADGNEEFPPMYSQGIDMSQDDVRA 438
           FDM DGNE+FPP+YSQG+D+SQDD+ A
Sbjct: 469 FDMGDGNEDFPPVYSQGVDISQDDLEA 419

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-21
Identity = 58/150 (38.67%), Postives = 76/150 (50.67%), Query Frame = 0

Query: 98  FEVGMRKISTNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKG------ 157
           F  G   ++ NVL   +    F YV+AGWEGSA+D  +L+ A+ R N LQV +G      
Sbjct: 164 FRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVD 223

Query: 158 --YPNTEGFLGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWA 217
             YPN  GF+ PY     +S+E          AKE FN +H      I R FG L  R+ 
Sbjct: 224 NKYPNLPGFIAPYHGVSTNSRE---------EAKEMFNERHKLLHRAIHRTFGALKERFP 283

Query: 218 ILRGKSYYPLQVQCRTILACCFLHNLINGE 240
           IL     YPLQ Q + ++A C LHN +  E
Sbjct: 284 ILLSAPPYPLQTQVKLVIAACALHNYVRLE 304

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-21
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 0

Query: 119 FVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQRYHSQEWRGAGNA 178
           F+YV++GWEGSA DS +L DA+ +     V  G+ N   FL P+   RYH QE+ G    
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK--FYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRD 84

Query: 179 PTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLI-- 238
           P    E FN++H S RNVIER FG+   R+AI +    +  + Q   +L C  LHN +  
Sbjct: 85  PETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFLRK 144

Query: 239 ---NGEMTYYDDVDNV-----DEGDSTYATTIATED-IHYIKTTYE-WSQWHDELTESMF 289
              + E  + D+V N      +EG++     I  E+ +   K   E  + W   + E M+
Sbjct: 145 ECRSDEADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQDRENTNMWRKSMAEDMW 204

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-08
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0

Query: 148 VSKGYPNTEGFLGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCR 207
           V+  YP T G+LGP+    YH  ++ G G  P   +E FN KH   R+VI+R FGV   +
Sbjct: 98  VNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGVWKAK 157

Query: 208 WAIL 212
           W IL
Sbjct: 158 WRIL 160

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-06
Identity = 28/95 (29.47%), Postives = 46/95 (48.42%), Query Frame = 0

Query: 91  NDQRLKCFEVGMRKISTNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGL---- 150
           + +++  F      IS N+L  C    +F+YV++GWEGSA DS +L+DA+ R +      
Sbjct: 39  SQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVP 98

Query: 151 --------QVSKGYPNTEGFLGPYSDQRYHSQEWR 174
                    V +   N +  L     QR ++ +WR
Sbjct: 99  EEDESAEEVVEEVNDNNDEVLTTQDQQREYANQWR 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN33754.16.69e-19567.13retrotransposon protein [Cucumis melo subsp. melo][more]
TYK03086.11.41e-18074.43retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064030.12.40e-15263.66retrotransposon protein [Cucumis melo var. makuwa] >TYK26181.1 retrotransposon p... [more]
ADN34114.13.07e-14152.81retrotransposon protein [Cucumis melo subsp. melo][more]
KAA0051849.19.71e-13157.36retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GBB23.24e-19567.13Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A5D3BY226.83e-18174.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9W91.16e-15263.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GCB51.49e-14152.81Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A5A7UEC44.70e-13157.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G41980.12.7e-2138.67CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G35695.13.5e-2134.62CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT4G10890.12.0e-0843.75unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439... [more]
AT5G28950.13.2e-0629.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 104..234
e-value: 2.3E-15
score: 56.6
NoneNo IPR availablePANTHERPTHR22930:SF211NUCLEASE HARBI1-RELATEDcoord: 104..290
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 104..290

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh102145.1MELO.jh102145.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh102145.1.t1.exon11MELO.jh102145.1.t1.exon11exon
MELO.jh102145.1.t1.exon10MELO.jh102145.1.t1.exon10exon
MELO.jh102145.1.t1.exon9MELO.jh102145.1.t1.exon9exon
MELO.jh102145.1.t1.exon8MELO.jh102145.1.t1.exon8exon
MELO.jh102145.1.t1.exon7MELO.jh102145.1.t1.exon7exon
MELO.jh102145.1.t1.exon6MELO.jh102145.1.t1.exon6exon
MELO.jh102145.1.t1.exon5MELO.jh102145.1.t1.exon5exon
MELO.jh102145.1.t1.exon4MELO.jh102145.1.t1.exon4exon
MELO.jh102145.1.t1.exon3MELO.jh102145.1.t1.exon3exon
MELO.jh102145.1.t1.exon2MELO.jh102145.1.t1.exon2exon
MELO.jh102145.1.t1.exon1MELO.jh102145.1.t1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_11CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_10CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_9CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_8CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_7CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_6CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_5CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_4CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_3CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1_2CDS
cds.MELO.jh102145.1.t1cds.MELO.jh102145.1.t1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh102145.1.t1MELO.jh102145.1.t1-proteinpolypeptide