CsaV3_3G021630.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G021630.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 18707819 .. 18707993 (-)
Sequence length	175
RNA-Seq Expression	CsaV3_3G021630.1
Synteny	CsaV3_3G021630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

mRNA sequence

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

Coding sequence (CDS)

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

Protein sequence

MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPVX

Homology

[Close]

BLAST of CsaV3_3G021630.1 vs. NCBI nr
Match: KAE8650629.1 (hypothetical protein Csa_010360, partial [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV 59
          MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV
Sbjct: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV 58

[Close]

BLAST of CsaV3_3G021630.1 vs. NCBI nr
Match: KAE8653003.1 (hypothetical protein Csa_004561, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 40/60 (66.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSG--FLLPPSQGAPYHGASGYRRIPV 59
          MWDPQQSVQMQGGG   G   F       V     G  FLLPPSQGAPYHGASGYRRIPV
Sbjct: 1  MWDPQQSVQMQGGGPTLGFLAFAV---AAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPV 57

[Close]

BLAST of CsaV3_3G021630.1 vs. NCBI nr
Match: KAG8373781.1 (hypothetical protein BUALT_Bualt11G0060800 [Buddleja alternifolia])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV 59
          +WD +Q +Q+QGGGA  G  G R GG GGVAGG S  LLPP +G PYHG+S  RR+ +
Sbjct: 4  VWDEEQPMQVQGGGAHAGFRGVRGGGVGGVAGGGSRLLLPPHEGPPYHGSSRRRRLSI 61

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650629.1	2.8e-24	100.00	hypothetical protein Csa_010360, partial [Cucumis sativus]	[more]
KAE8653003.1	2.1e-08	66.67	hypothetical protein Csa_004561, partial [Cucumis sativus]	[more]
KAG8373781.1	2.3e-07	56.90	hypothetical protein BUALT_Bualt11G0060800 [Buddleja alternifolia]	[more]

BLAST of CsaV3_3G021630.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021630.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021630.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..58

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G021630	CsaV3_3G021630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021630.1.exon1	CsaV3_3G021630.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021630.1.cds1	CsaV3_3G021630.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021630.1	CsaV3_3G021630.1-protein	polypeptide