Cmc08g0232711.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc08g0232711.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr08: 29697637 .. 29698458 (+)
Sequence length721
RNA-Seq ExpressionCmc08g0232711.1
SyntenyCmc08g0232711.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAATCATTCACAAGTTGTTCGTAACATTAACTGGGTCAAAATACCATTTTACCCTTGAGATTATATCTTGCTTCATAAGTCCTACTAATTCACTATTGAACAATTTGTTTAAGGTGTAACCTATAAACCGATGGCGAACATTTGGTTAAAGTCAAAAACTACAAAAAATGCATTCCCAAAAAGACGATGGGCCAGGTTTAAGAACTATTGGTTTCAGACCAAAAAAAAAGGTGAATGATGATGCCTCTGATTCAGCTCTTACTTTAGGACCAAAAGTGGTCCTTCAACGATTTTTTTATTTTTTTCTTGGTCCTAAGCCTTTCCATTTCAGGGATTCCAGGACCAAGGACTTTCGCCTACGTTCCTGATGTGGTCCCTTACATATTTACCCAAAGTATAGGCCGGAAAACGAATTCATTAGGGGAATAATAAGGTGCCAATCAAAATGATCGAAAAGTTGCCGATGCTTCCAAAGAGTAGCAAACATTTGGCGTGTCAAAAACCATTGAAAATACATTCCCGCAAAAAAAAAAAAAGGCCAAGTCTAAGAACTTATTGTATCGGTCCCAGAAAAAGGTGAATGACGGTGCATTAGACTTAGCTCTTATTATGGGGTTAGAAGTGGTCCTTGAACGGTTTCTTTGTTCGTCTTGGTCTTAAGCCTTTTCAGTTCAGAGATTCCATAACCAAGGACTTCCATCTAAACATTATACTTACACATTTATCCAAAATATAGTTTGGGAAGCGAGCTCATTGGGGTGTACTAAATGATTTATAACTTAACTAATAATTTTATACTACTACAAATTGAGTTGAGTTG

mRNA sequence

GTTAATCATTCACAAGTTGTTCGTAACATTAACTGGGTCAAAATACCATTTTACCCTTGAGATTATATCTTGCTTCATAAGTCCTACTAATTCACTATTGAACAATTTGTTTAAGGTGTAACCTATAAACCGATGGCGAACATTTGGTTAAAGTCAAAAACTACAAAAAATGCATTCCCAAAAAGACGATGGGCCAGGTTTAAGAACTATTGGTTTCAGACCAAAAAAAAAGGGATTCCAGGACCAAGGACTTTCGCCTACGTTCCTGATGTGGTCCCTTACATATTTACCCAAAGTATAGGCCGGAAAACGAATTCATTAGGGGAATAATAAGGTGCCAATCAAAATGATCGAAAAGTTGCCGATGCTTCCAAAGAGTAGCAAACATTTGGCGTGTCAAAAACCATTGAAAATACATTCCCGCAAAAAAAAAAAAAGGCCAAGTCTAAGAACTTATTGTATCGGTCCCAGAAAAAGGTGAATGACGGTGCATTAGACTTAGCTCTTATTATGGGGTTAGAAGTGGTCCTTGAACGGTTTCTTTGTTCGTCTTGGTCTTAAGCCTTTTCAGTTCAGAGATTCCATAACCAAGGACTTCCATCTAAACATTATACTTACACATTTATCCAAAATATAGTTTGGGAAGCGAGCTCATTGGGGTGTACTAAATGATTTATAACTTAACTAATAATTTTATACTACTACAAATTGAGTTGAGTTG

Coding sequence (CDS)

ATGGCGAACATTTGGTTAAAGTCAAAAACTACAAAAAATGCATTCCCAAAAAGACGATGGGCCAGGTTTAAGAACTATTGGTTTCAGACCAAAAAAAAAGGGATTCCAGGACCAAGGACTTTCGCCTACGTTCCTGATGTGGTCCCTTACATATTTACCCAAAGTATAGGCCGGAAAACGAATTCATTAGGGGAATAA

Protein sequence

MANIWLKSKTTKNAFPKRRWARFKNYWFQTKKKGIPGPRTFAYVPDVVPYIFTQSIGRKTNSLGE
Homology
[Close]
BLAST of Cmc08g0232711.1 vs. NCBI nr
Match: KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 8   SKTTKNAFPKRRWARFKNYWFQTKKKGIPGPRTFAYVPDVVPYIFTQSIGRKTNSL 64
           S+TTKNA   R+ A+ K++W  T       PRT  Y+P +VP+ F QSIGR+ +SL
Sbjct: 79  SETTKNAVHGRKQAKLKDFWSSTSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSL 134

[Close]
BLAST of Cmc08g0232711.1 vs. ExPASy TrEMBL
Match: A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.9e-05
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 8   SKTTKNAFPKRRWARFKNYWFQTKKKGIPGPRTFAYVPDVVPYIFTQSIGRKTNSL 64
           S+TTKNA   R+ A+ K++W  T       PRT  Y+P +VP+ F QSIGR+ +SL
Sbjct: 79  SETTKNAVHGRKQAKLKDFWSSTSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSL 134

The following BLAST results are available for this feature:
BLAST of Cmc08g0232711.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047414.12.0e-0446.43gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ... [more]
BLAST of Cmc08g0232711.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0232711.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CV189.9e-0546.43Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079... [more]
BLAST of Cmc08g0232711.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc08g0232711Cmc08g0232711gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0232711.1-exonCmc08g0232711.1-exon-CMiso1.1chr08:29697637..29697868exon
Cmc08g0232711.1-exonCmc08g0232711.1-exon-CMiso1.1chr08:29697970..29698458exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0232711.1-five_prime_utrCmc08g0232711.1-five_prime_utr-CMiso1.1chr08:29697637..29697768five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0232711.1-cdsCmc08g0232711.1-cds-CMiso1.1chr08:29697769..29697868CDS
Cmc08g0232711.1-cdsCmc08g0232711.1-cds-CMiso1.1chr08:29697970..29698067CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0232711.1-three_prime_utrCmc08g0232711.1-three_prime_utr-CMiso1.1chr08:29698068..29698458three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc08g0232711.1Cmc08g0232711.1-proteinpolypeptide