Carg21118-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21118-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 8060281 .. 8063352 (+)
Sequence length516
RNA-Seq ExpressionCarg21118-RA
SyntenyCarg21118-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGAATTTCCCATAAGCCTTTTGCTCGTAGCTTGTTTTCGGAGACGTGGACACGGTCCAGGAAAGCCAGGTATGTAACTTCTGATGTGAAGAGGGTGGATGGAATATAGCTCAATCCTGTCAATAAGCTTTCAACTTTCTGCATTAGAAGAGAAATAAGTTAGCAAGCAGTGTTTTATGGGGCTATTTTTGTTTTTAGATGGCAAAACTCCTCACCTTGTTTATAAAGTCAAGTTCATCTGGGTTGAAGTACTTTGCTATTTCCAAGCAGTAGAAAACTTTTCGATCTGAATTGAATTTGCTGGCTTGCAGTGGTTCTTGGGGATTAAAAGAAGATCTCCAGTTATTGAGGAGACCAGTTCTATTAATAAATACAAATCCTTCAATATAATCAAATTGATCATTGGATGATATTAGATGTTCTTGGTCTCTTGTAAATTTGGAGAAGTCTGAGTAAAGTACTCTTATCCATTTTACCTGTCAAAAGTGATGGATTGTGTTTCATAATTTGAGTACCTCGCTTTAATGAAATGGATGGAATATGGCCTTACCATTTTTGGTGCCTTTTCCAAGGAAATCCTTGCCCTTGTTATGATGCCAAACTGTCCAAGCCCGCCAAGAACAGCATGGAAAAGGTCTGCATTTTGATTCTCTGAACAAGCAACCACCTCCCCTTTTCCTGCAATGCGTTTAGTTGAAGCAAATACTCTTAAAACATTTTATTAAGATCAACGAGTTGAAAAAACTAGAACATTACCAGGAAAGAAATAGTTGTTTCTTTGTGACATGACTAGCGATGTTACATGAAAGTTACCTGTGACAACTTCGAGCTGATAAACGTTGCTGATTTGGGGTCCATGCCGGAAGGCCTGCCCACTAATGCCAGCATTTGACAAGGTGCCTCCAACAGTAAGATGCAGGTAATCTGTCCAGGATTTTGGTGCCAGCCCTTGTTTAAGAGTTTCATGCAGGATATTTATCCACAGCTCTCCAGCTGAAACGTCCACATAAGGTAATTCCCCTGCATTTATTTTGATTTCTAGCCCCTGAAATGATTCCATATTGATAACTACACCATTATATGCTTGAGCTTGACCTTGGATGGAATGTCCATGGCCTCTAGCTGCAACCGTCAAGTCGGACGCATATCCCATACTGAAAATATGGTTTATCGTGTTCGAAATATCGGACACAGATTTTGGATGTAAAACAGCTAATGGGTATAAATTGTATCTGTTTCCAAAATCTGTTGCTGCTTTATGATTATTGTCAAAGCTGAGGTATCCATCCAATTCCAGTGTTTGCAGTTCATAAGAGGATATATCAGAGGAACCAAAATGAGGAGGAATTGTTGGGGCTGCAAAAAGGTGGTTGGTGCTGTCAGGTATGCAACTGATGTATAGAATTATGTATAACTTGAGGAAAATAATGCTTTGTTTGATGAAGCCAGAAGGTGGCGACCCCATCTTTCCTTAAGGAGAGAAAGAAAGAGTGATAGAAAGAATAAGAGAGAGAGAGCGAGAGAGAGCGAGAGAGAGAGAGAGAGCAAAAGGAGAGGTGCAGAAAAGCCTAAGGAATGAAGTGGAATGAAAGAGAATTTAAAGAAGTTCTTGGGCGGCATAGTCAAACATATAGTTGGTGGCATTGGGCGAGCTAGCTACCAGTAGTTCTTTTGGTTCACCTTTTTGAGGTTAAAAAAAAAAAAAACAGAGGAGATAAAAAAAACTGCCCAAAAGCAAAAGCAAAAACATAAATATTTCCTTTTCCTTTTCCTTTTCTCGATTGACACTTTCTGAAGAACAGTTCTCAACCAAATTTTAGTGAAAGAAAACAAAAATCACCTTGACCATTAATTGAGGAAGGTGCAGAGTGGTGTTGTTTACTGCATGAAGCAAAGATTTTATGTTTCTCCTTATTCCAATCTTGTCAAAATTCACTGTTTGTCTTCTTTACACACTGAATGCGGCTGCAAAACCACTGTAATTGGCTGAATTTTCACTTTTTGTCTGCTGTTCATATATGGTACAGTTTGAATTCAATTTCTCTATTGCAGAGTGAATGGCGGGCTGGCCCCTACTCTGTTTCATGCTTCTTCAAGCTGAGTGTCTGAGGAGTCAGATATCTTGGACCCACTTCATTTTTTCTTCATAAGAGTATAGATTGTGCTTTGACAGCTCTTACCAACGAGCTATATAGTTCTTTCTATATAATTTTCATGAATTTCTTACATGTTCATATTTAGCTTTGTATATGTTCGTTTGTCGATTTTTATCGTTATGGTATAGATATGAGATCAAGCCATCAAAAGCTTAAAAGGGTAAGCACAATCTAGATTGCTTACTACAAATTTTGGTCGAAACCATCGTAAGGGGCTCTCGATGCCGATCTTTGTAAGGTCAAAGACTCAATACATATGCACGTGAACTAGCTCATTAGTAGTTCTTAGAAAAAGTAAATAGAATAAGCATGATAGTTATGTTGAAGGTAGACAAATAAACATATTTCAAAGGGGAAATAAAAATCGAACGTAGAGACCGTCGATTCTTGTACGTCTGTTCTTAAATCTCTTCATTCACTGTGTTCTTGATTATAAATTTCAAAAGGTTATTCAAACAGTGATGGTCAATATTTTGTTATTCTCTCAATTGCATTGAACTGCATCTAGATTTTGATGTATGTTTCTCTTTGATTCAGGGACTAAAAGTTGTTTTTTTTCCTTTCTAGGTGCTGAAGAAGAAGTGTCTGAAAAGGAAAGATGAAAGATATATGTAGATGGAATGAGGGCAGAGCAGCAGCAGCAGCAGCAAAGAAAGCTCAATTTACTGCATGTGATAATTCCTTAGCTTTTTTGCGGACTTAAAAGGTATGTGGCTTCATCATCAAACTTCTAATGGAGGGTAAGAGTGAGAGTGAGAGAGAGAGAAGATTGGGAAGGGGTGGGGCCATAGACATGTGATCTGCATAAGGAGGGTAGTGGCCCAAGAAAAGGAAGGGATTGAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTTAGATAAAGAATGTTGAGGGTATGTTAATATCAA

mRNA sequence

ATGGATGAGGAATTTCCCATAAGCCTTTTGCTCGTAGCTTGTTTTCGGAGACGTGGACACGGTCCAGGAAAGCCAGGATATTTATCCACAGCTCTCCAGCTGAAACGTCCACATAAGAGGAACCAAAATGAGGAGGAATTGTTGGGGCTGCAAAAAGGTGGTTGGTGCTGTCAGGTGCTGAAGAAGAAGTGTCTGAAAAGGAAAGATGAAAGATATATGTAGATGGAATGAGGGCAGAGCAGCAGCAGCAGCAGCAAAGAAAGCTCAATTTACTGCATGTGATAATTCCTTAGCTTTTTTGCGGACTTAAAAGGTATGTGGCTTCATCATCAAACTTCTAATGGAGGGTAAGAGTGAGAGTGAGAGAGAGAGAAGATTGGGAAGGGGTGGGGCCATAGACATGTGATCTGCATAAGGAGGGTAGTGGCCCAAGAAAAGGAAGGGATTGAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTTAGATAAAGAATGTTGAGGGTATGTTAATATCAA

Coding sequence (CDS)

ATGGATGAGGAATTTCCCATAAGCCTTTTGCTCGTAGCTTGTTTTCGGAGACGTGGACACGGTCCAGGAAAGCCAGGATATTTATCCACAGCTCTCCAGCTGAAACGTCCACATAAGAGGAACCAAAATGAGGAGGAATTGTTGGGGCTGCAAAAAGGTGGTTGGTGCTGTCAGGTGCTGAAGAAGAAGTGTCTGAAAAGGAAAGATGAAAGATATATGTAG

Protein sequence

MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVLKKKCLKRKDERYM
Homology
[Close]
BLAST of Carg21118-RA vs. NCBI nr
Match: KAG7027650.1 (hypothetical protein SDJN02_11665, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 6.6e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVL 60
          MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVL
Sbjct: 1  MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVL 60

Query: 61 KKKCLKRKDERYM 74
          KKKCLKRKDERYM
Sbjct: 61 KKKCLKRKDERYM 73

The following BLAST results are available for this feature:
BLAST of Carg21118-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027650.16.6e-36100.00hypothetical protein SDJN02_11665, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21118-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21118-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21118-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg21118Carg21118gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21118-RA:1Carg21118-RA:1exon
Carg21118-RA:2Carg21118-RA:2exon
Carg21118-RA:3Carg21118-RA:3exon
Carg21118-RA:4Carg21118-RA:4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21118-RA:cdsCarg21118-RA:cdsCDS
Carg21118-RA:cdsCarg21118-RA:cds_2CDS
Carg21118-RA:cdsCarg21118-RA:cds_3CDS
Carg21118-RA:cdsCarg21118-RA:cds_4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21118-RA:three_prime_utrCarg21118-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg21118-RACarg21118-RA-proteinpolypeptide