Bhi11M000516 (mRNA) Wax gourd (B227) v1

Overview
NameBhi11M000516
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUbiquitin family protein
Locationchr11: 15139505 .. 15139753 (-)
Sequence length249
RNA-Seq ExpressionBhi11M000516
SyntenyBhi11M000516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGCAGATGCTGATCTTTGTGAATACGTTAGATGGAAAGAGTAGAATTTCTATAGACGTTGGATCAATGGATACGATTGCGGCTGTAAAGGCTACAATCAAATCCCATAAGATCATACCTATTGAGTCTCAGAAGCTGATTTATGCTGGAAAGACCCTCGAAGATCATCAAACTTTAGCACATTATAACATCCTCGATGATTCTATTTTGTATTTGGTTTTTCGTCTTCATGGTGGTTTTTAA

mRNA sequence

ATGGAAATGCAGATGCTGATCTTTGTGAATACGTTAGATGGAAAGAGTAGAATTTCTATAGACGTTGGATCAATGGATACGATTGCGGCTGTAAAGGCTACAATCAAATCCCATAAGATCATACCTATTGAGTCTCAGAAGCTGATTTATGCTGGAAAGACCCTCGAAGATCATCAAACTTTAGCACATTATAACATCCTCGATGATTCTATTTTGTATTTGGTTTTTCGTCTTCATGGTGGTTTTTAA

Coding sequence (CDS)

ATGGAAATGCAGATGCTGATCTTTGTGAATACGTTAGATGGAAAGAGTAGAATTTCTATAGACGTTGGATCAATGGATACGATTGCGGCTGTAAAGGCTACAATCAAATCCCATAAGATCATACCTATTGAGTCTCAGAAGCTGATTTATGCTGGAAAGACCCTCGAAGATCATCAAACTTTAGCACATTATAACATCCTCGATGATTCTATTTTGTATTTGGTTTTTCGTCTTCATGGTGGTTTTTAA

Protein sequence

MEMQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHYNILDDSILYLVFRLHGGF
Homology
BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 381 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 440

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 441 NIQKESTLHLVLRLRGGF 457

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 153 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 212

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 213 NIQKESTLHLVLRLRGGF 229

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05050.1 (ubiquitin 11 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 153 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 212

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 213 NIQKESTLHLVLRLRGGF 229

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05320.3 (polyubiquitin 10 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 305 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 364

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 365 NIQKESTLHLVLRLRGGF 381

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05320.4 (polyubiquitin 10 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 381 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 440

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 441 NIQKESTLHLVLRLRGGF 457

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P0CG85 (Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 381 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 440

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 441 NIQKESTLHLVLRLRGGF 457

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P0CG84 (Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 301 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 360

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 361 NIQKESTLHLVLRLRGGF 377

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P69322 (Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 305 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 364

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 365 NIQKESTLHLVLRLRGGF 381

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P69325 (Polyubiquitin OS=Glycine max OX=3847 GN=SUBI-1 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 229 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 288

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 289 NIQKESTLHLVLRLRGGF 305

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P69313 (Ubiquitin OS=Helianthus annuus OX=4232 PE=3 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 5  MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
          M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 1  MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 60

Query: 65 NILDDSILYLVFRLHGGF 83
          NI  +S L+LV RL GGF
Sbjct: 61 NIQKESTLHLVLRLRGGF 77

BLAST of Bhi11M000516 vs. NCBI nr
Match: CEP02084.1 (hypothetical protein PBRA_002349 [Plasmodiophora brassicae] >SPQ93723.1 unnamed protein product [Plasmodiophora brassicae])

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI AVKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 1  MSMQIFVKTLTGKT-ITLDVASSDTIEAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 60

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 61 DYNIQKESTLHLVLRLRGG 78

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAF8722539.1 (hypothetical protein HU200_022367 [Digitaria exilis])

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 2   EMQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTL 61
           E +M IFV TL GK+ I+++V S DT+A VKA ++  + IP + Q+LI+AGK LED +TL
Sbjct: 189 EFKMQIFVKTLTGKT-ITLEVESSDTVANVKAKVQDKEGIPPDQQRLIFAGKQLEDERTL 248

Query: 62  AHYNILDDSILYLVFRLHGG 82
           A YNI  +S L+LV RL GG
Sbjct: 249 ADYNIQKESTLHLVLRLRGG 267

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAG9446958.1 (hypothetical protein H6P81_013086 [Aristolochia fimbriata])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 5  MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
          M IFV TL GK+ I+++V S DTI  VKA IK  + IP + Q+LI+AGK LED QTLA Y
Sbjct: 1  MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIKDKEGIPPDQQRLIFAGKQLEDGQTLADY 60

Query: 65 NILDDSILYLVFRLHGG 82
          NI  DS L+LV RL GG
Sbjct: 61 NIQKDSTLHLVLRLRGG 76

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAG2642985.1 (hypothetical protein PVAP13_2KG291900 [Panicum virgatum])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 4   QMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAH 63
           +M IFV TL GK+ ++++V S DT+A VKA I+  + IP E Q+LI+AGK LED +TLA 
Sbjct: 72  EMQIFVKTLTGKT-VTLEVDSSDTVANVKAKIQDKEGIPPEQQRLIFAGKQLEDERTLAG 131

Query: 64  YNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 132 YNIQKESTLHLVLRLRGG 148

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAA0025488.1 (putative ubiquitin C variant 1 [Cucumis melo var. makuwa] >TYK00377.1 putative ubiquitin C variant 1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 7  IFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHYNI 66
          +FV T DG+ + S++V   DTIA VK  +++   +P +SQ+L++ GKTLEDH+ L HYNI
Sbjct: 1  MFVRTFDGE-KFSLEVEPTDTIADVKDQMEALNEVPSDSQRLLFGGKTLEDHKALEHYNI 60

Query: 67 LDDSILYLVFRLHGG 82
            DS LYL+FR++GG
Sbjct: 61 EKDSTLYLIFRVYGG 74

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A0G4J3X7 (Ubiquitin-like domain-containing protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_002349 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI AVKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 1  MSMQIFVKTLTGKT-ITLDVASSDTIEAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 60

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 61 DYNIQKESTLHLVLRLRGG 78

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A5D3BMG6 (Putative ubiquitin C variant 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00430 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.1e-12
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 7  IFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHYNI 66
          +FV T DG+ + S++V   DTIA VK  +++   +P +SQ+L++ GKTLEDH+ L HYNI
Sbjct: 1  MFVRTFDGE-KFSLEVEPTDTIADVKDQMEALNEVPSDSQRLLFGGKTLEDHKALEHYNI 60

Query: 67 LDDSILYLVFRLHGG 82
            DS LYL+FR++GG
Sbjct: 61 EKDSTLYLIFRVYGG 74

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A1Q3B9A7 (Ubiquitin domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07952 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.1e-12
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP++ Q+LI+AGK LED +TLA Y
Sbjct: 305 MQIFVKTLTGKT-ITLEVESSDTIENVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLADY 364

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 365 NIQKESTLHLVLRLRGGF 381

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A0G4IGV5 (Ubiquitin OS=Plasmodiophora brassicae OX=37360 GN=PBRA_000236 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 11 MTMQIFVKTLTGKT-ITLDVDSGDTIETVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 70

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 71 DYNIQKESTLHLVLRLRGG 88

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A0G4J149 (Uncharacterized protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_001954 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 1  MTMQIFVKTLTGKT-ITLDVDSGDTIETVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 60

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 61 DYNIQKESTLHLVLRLRGG 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G05320.27.7e-1556.41polyubiquitin 10 [more]
AT4G02890.17.7e-1556.41Ubiquitin family protein [more]
AT4G05050.17.7e-1556.41ubiquitin 11 [more]
AT4G05320.37.7e-1556.41polyubiquitin 10 [more]
AT4G05320.47.7e-1556.41polyubiquitin 10 [more]
Match NameE-valueIdentityDescription
P0CG851.1e-1356.41Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1[more]
P0CG841.1e-1356.41Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1[more]
P693221.1e-1356.41Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2[more]
P693251.1e-1356.41Polyubiquitin OS=Glycine max OX=3847 GN=SUBI-1 PE=2 SV=2[more]
P693131.1e-1356.41Ubiquitin OS=Helianthus annuus OX=4232 PE=3 SV=2[more]
Match NameE-valueIdentityDescription
CEP02084.12.6e-1258.23hypothetical protein PBRA_002349 [Plasmodiophora brassicae] >SPQ93723.1 unnamed ... [more]
KAF8722539.19.8e-1253.75hypothetical protein HU200_022367 [Digitaria exilis][more]
KAG9446958.11.3e-1159.74hypothetical protein H6P81_013086 [Aristolochia fimbriata][more]
KAG2642985.11.3e-1155.13hypothetical protein PVAP13_2KG291900 [Panicum virgatum][more]
KAA0025488.11.7e-1150.67putative ubiquitin C variant 1 [Cucumis melo var. makuwa] >TYK00377.1 putative u... [more]
Match NameE-valueIdentityDescription
A0A0G4J3X71.2e-1258.23Ubiquitin-like domain-containing protein OS=Plasmodiophora brassicae OX=37360 GN... [more]
A0A5D3BMG68.1e-1250.67Putative ubiquitin C variant 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1Q3B9A78.1e-1256.41Ubiquitin domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v... [more]
A0A0G4IGV51.1e-1156.96Ubiquitin OS=Plasmodiophora brassicae OX=37360 GN=PBRA_000236 PE=3 SV=1[more]
A0A0G4J1491.1e-1156.96Uncharacterized protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_001954 PE=4... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 16..36
score: 41.96
coord: 37..57
score: 50.59
coord: 58..79
score: 49.55
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 5..77
e-value: 2.8E-20
score: 83.4
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 7..78
e-value: 7.4E-22
score: 76.9
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 5..81
score: 21.415316
NoneNo IPR availableGENE3D3.10.20.90coord: 1..82
e-value: 1.5E-26
score: 94.1
NoneNo IPR availablePANTHERPTHR10666:SF327UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1coord: 3..81
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 3..81
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 32..57
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 4..81

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi11G000516Bhi11G000516gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi11M000516.exon1Bhi11M000516.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi11M000516cds.Bhi11M000516CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi11M000516Bhi11M000516-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019941 modification-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0031386 protein tag
molecular_function GO:0031625 ubiquitin protein ligase binding