Tan0020089 (gene) Snake gourd v1

Overview


Name	Tan0020089
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein S14
Location	LG11: 7728257 .. 7730427 (-)
RNA-Seq Expression	Tan0020089
Synteny	Tan0020089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTCTCCTTCAGCCGATTTCGATTTCTCTCCATCTCTCACTTTCCTGGTCTGCTCGAAGGTAGCCACTGTAGAGGATTTGATAGCTTGAAGGTAACTCAATAGTCCATTTTTTGTATTCTCTTTCTGTTTTCCAGCATGAGTTTTCAGTCTCGGCATTGAACGGCTGAGTAACGATTGACGAGGGACCGTTGATAGTTGGAATGGAACAAGTATCTTTATAGGCTTTTGAATTGGTATTGAAATCATGAAATTCGCGAAATTAGGTCAAACGAAATGTCGGGGGACAACAGGAACATTCTTGACCATTATCGCCGTCAGCTTGCTGCGAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCGTTTGCAATGATCCGAGTCTTCCTAACGATGTGCGTGAAGAGCAGCGTTATAAGCTGTCGAAGTTGCCTAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGCCGACCTAGGGCCGTTTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGTGATCTGGCGTCCAAAGGTCTTATAATGGGTGTGAAGAAATCTTCTTGGTAGATATTGGTACGAAATTGTTCTTCAATTTACACTTTCATTTGAGTTGTATGGATTTCTTTTTTCACGCTAAAGGAGTTTTTGATAGTTCAATGTATAGTGTATGATAATGAATGTAGGGTAGGACGTATATGTTGTATTAAGGTCCATTTCTTTACTGTTGAATGCTTGTCTATGATAAATGGATTTGTTAACTGCTGGATGATATCATGTTGTTGAGAACATGGTATGAGACAGGTTAGCCATGAATTTTTGCTCTCGTCCATGAACATGCTTTGTCAGTGGAAGCTTGGTTTTACTCTATCGCCAGTGAAAGATTGTGATGGAGATTGGTTCATCACTGTCCGTACAAAACAGTAATGTTGGGGTTTGCTAGCTTAGCTGTTCCTACTAGAAGCTACAGTATTTTGCTTTTAAAGATTAAGACGTAGTTGATGGGGCTTGATTTAAGTTTACACTCGCAGTTTTAGCTAGTTAGGTTCAGAACTAAGGAGAGGATGTTTGCTAATTCAAATGTACAGGTATCGGTTCCTCTTTAGTTTGTTCATTCCCATGTGGTACTATTTTGTTCAAGCTTTATTAGGACTTTGAAGAAGTATATAAACAAGATACTAAAGAATATATAACTTGGTTCCAATATGCTTTATGTTTCCCCCATTTTAAGACGATATTAGTATATCACATTCTTTAATTTTTACTTCTCCTTCCAAGTCTTCTCATCCCCATGCCAGATAAGAAAACTTCAACTGTATATTTAACTTGGTGTAATTAGAATATATTTTCTATTGAGGAGAAACAGACTTGGAATAAATATTTCGTGGCCTATCCTTTTATTTTAAGCTCGGCTGCTTCCTTTTTATTTATGTGCTATGATTTAATTTTACTTGCAGTGATCCACTTCAACCACTAATACAAAGCTTGTAACAACCTTAATCGAACAGGATCTGTACTACAGGCTGAGCAAATGTTTCCTTGAGTTATAACAAGTACAAAACATATAGATGCTGTAGTCACCGAAGTATTGTGGTCATATTCCGTGTCCTTTTGGTTGGTTGGTTTTTTACACTGACTGGTTTAATTGTGCATCATGTGCAGGTTGATGGTAGAGGCTTTTGTCGTCGGGGATCAATTATCATTGTTGAATTATATTTCTGCGAGATTCTCTCTTTAATATCAGCGGGAATTAGTTATAGACACTGAAAAGGGTGATATTAACTGTAAGTTCCTTGGACACGTGCATTCATGCTCTTTACGTGTATGACTGAAGAAGAGTAAAGGTTTATTTGTTATTCAATAAGCGTTTTCTGGTAGACTGTTACCAATGCTGTTGTTTTACACTATCTTTGGTTATCAGCTACTTCCTCTTTTACTGCATTTTCATTTGAGTTTTAGCCAGATGGCCTAGCAAATGGTCAATGTAAACAGTAAAGAGTTTATTATTTTTAAGTTTCCTTGACAACCAAATGTGGTAGGATGAGACAATTGTCTCATGAGAATAGTTGGGGTGCATGTAACCTGATCTAGACACGCATGGATATTACAAAAACAATAATAATAAACACTGCATCTCCCTGCACTCTTGTCAATTATTA

mRNA sequence

TTCGTCTCCTTCAGCCGATTTCGATTTCTCTCCATCTCTCACTTTCCTGGTCTGCTCGAAGGTAGCCACTGTAGAGGATTTGATAGCTTGAAGGTCAAACGAAATGTCGGGGGACAACAGGAACATTCTTGACCATTATCGCCGTCAGCTTGCTGCGAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCGTTTGCAATGATCCGAGTCTTCCTAACGATGTGCGTGAAGAGCAGCGTTATAAGCTGTCGAAGTTGCCTAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGCCGACCTAGGGCCGTTTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGTGATCTGGCGTCCAAAGGTCTTATAATGGGTGTGAAGAAATCTTCTTGGTAGATATTGGTTGATGGTAGAGGCTTTTGTCGTCGGGGATCAATTATCATTGTTGAATTATATTTCTGCGAGATTCTCTCTTTAATATCAGCGGGAATTAGTTATAGACACTGAAAAGGGTGATATTAACTGTAAGTTCCTTGGACACGTGCATTCATGCTCTTTACGTGTATGACTGAAGAAGAGTAAAGGTTTATTTGTTATTCAATAAGCGTTTTCTGGTAGACTGTTACCAATGCTGTTGTTTTACACTATCTTTGGTTATCAGCTACTTCCTCTTTTACTGCATTTTCATTTGAGTTTTAGCCAGATGGCCTAGCAAATGGTCAATGTAAACAGTAAAGAGTTTATTATTTTTAAGTTTCCTTGACAACCAAATGTGGTAGGATGAGACAATTGTCTCATGAGAATAGTTGGGGTGCATGTAACCTGATCTAGACACGCATGGATATTACAAAAACAATAATAATAAACACTGCATCTCCCTGCACTCTTGTCAATTATTA

Coding sequence (CDS)

ATGTCGGGGGACAACAGGAACATTCTTGACCATTATCGCCGTCAGCTTGCTGCGAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCGTTTGCAATGATCCGAGTCTTCCTAACGATGTGCGTGAAGAGCAGCGTTATAAGCTGTCGAAGTTGCCTAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGCCGACCTAGGGCCGTTTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGTGATCTGGCGTCCAAAGGTCTTATAATGGGTGTGAAGAAATCTTCTTGGTAG

Protein sequence

MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW

Homology

[Close]

BLAST of Tan0020089 vs. ExPASy Swiss-Prot
Match: P14875 (Ribosomal protein S14, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 8.6e-37
Identity = 71/98 (72.45%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 4   DNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           + RNI DH RR LA K+EL+RKLYKA CNDP+LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 2   EKRNIRDHKRRLLATKYELRRKLYKAFCNDPALPSDMRDKHRYKLSKLPRNSSFARVRNR 61

Query: 64  CIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           CI TGRPR+VY+ FR+SRIVFR LAS+G +MG+KKSSW
Sbjct: 62  CISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99

[Close]

BLAST of Tan0020089 vs. ExPASy Swiss-Prot
Match: P05716 (Ribosomal protein S14, mitochondrial OS=Vicia faba OX=3906 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 7.3e-36
Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 4   DNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           + RNI DH RR LAAK+EL+RKLYKA C D  LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNR 62

Query: 64  CIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           CI TGRPR+VY+LFR+SRIVFR LAS+G +MG+KKSSW
Sbjct: 63  CISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100

[Close]

BLAST of Tan0020089 vs. ExPASy Swiss-Prot
Match: P49387 (Ribosomal protein S14, mitochondrial OS=Brassica napus OX=3708 GN=RPS14 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.2e-34
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 4   DNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           + +N  DH RR LAAKFEL+RKLYKA C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKQNSRDHKRRLLAAKFELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 62

Query: 64  CIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           CI TGRPR+V + FR+ RIVFR LAS+G +MG+KKSSW
Sbjct: 63  CISTGRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100

[Close]

BLAST of Tan0020089 vs. ExPASy Swiss-Prot
Match: P26873 (Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 5   NRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRC 64
           N+ I DH RR L AK+ELKR  YKA+C D +LPN +R E  +KLSKLPRNSS TR+RNRC
Sbjct: 3   NQIIRDHKRRLLVAKYELKRMHYKAICQDRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRC 62

Query: 65  IFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           IFTGRPR+VY+LFR+SRIVFR+LASKG ++G+ KS W
Sbjct: 63  IFTGRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99

[Close]

BLAST of Tan0020089 vs. ExPASy Swiss-Prot
Match: P46752 (Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS14 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-20
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 10  DHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFTGR 69
           D  RR+L  K+E KR LYKA+ +D +L  D+R     KL+KLPRNSS  R++NRCI TGR
Sbjct: 8   DLKRRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGR 67

Query: 70  PRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
             +VY+  R+SRI FRDLA++GLI G  KSSW
Sbjct: 68  GHSVYKFCRISRIKFRDLANQGLIQGCVKSSW 99

[Close]

BLAST of Tan0020089 vs. NCBI nr
Match: XP_022134507.1 (uncharacterized protein LOC111006733 [Momordica charantia] >XP_022134508.1 uncharacterized protein LOC111006733 [Momordica charantia])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGD RNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. NCBI nr
Match: XP_038884392.1 (ribosomal protein S14, mitochondrial [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MS D RNILDHYRRQLAAKFE+KRKLYKA+CNDPSLPNDVRE+ RYKLSKLPRNSSFTRL
Sbjct: 1   MSEDKRNILDHYRRQLAAKFEVKRKLYKAICNDPSLPNDVREDHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. NCBI nr
Match: XP_022938933.1 (uncharacterized protein LOC111444996 [Cucurbita moschata] >XP_022938934.1 uncharacterized protein LOC111444996 [Cucurbita moschata] >KAG7016311.1 Ribosomal protein S14, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           M+ D RNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. NCBI nr
Match: XP_023550870.1 (uncharacterized protein LOC111808878 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 3.4e-46
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           M+ D RNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGL+MGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLVMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. NCBI nr
Match: KAG7032953.1 (Ribosomal protein S14, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 7.5e-46
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           M+ D RNILDHYRRQLAAKFELKRKL+KAVCNDPSLPNDVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLFKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. ExPASy TrEMBL
Match: A0A6J1C264 (uncharacterized protein LOC111006733 OS=Momordica charantia OX=3673 GN=LOC111006733 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.0e-49
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGD RNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. ExPASy TrEMBL
Match: A0A6J1FKA4 (uncharacterized protein LOC111444996 OS=Cucurbita moschata OX=3662 GN=LOC111444996 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           M+ D RNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MTEDKRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFRVSRIVFRDLASKGLIMGVKKSSW
Sbjct: 61  RNRCIFTGRPRGVYQLFRVSRIVFRDLASKGLIMGVKKSSW 101

[Close]

BLAST of Tan0020089 vs. ExPASy TrEMBL
Match: A0A5D3CKB3 (Ribosomal protein S14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00590 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGD RNILD+YRRQLAAKFE+KR L+KA+CNDPSLP DVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFEVKRNLFKAICNDPSLPKDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Tan0020089 vs. ExPASy TrEMBL
Match: A0A1S4E169 (ribosomal protein S14, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496488 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGD RNILD+YRRQLAAKFE+KR L+KA+CNDPSLP DVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFEVKRNLFKAICNDPSLPKDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Tan0020089 vs. ExPASy TrEMBL
Match: A0A0A0LSR8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386130 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSGDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGD RNILD+YRRQLAAKFELKR L+KA+CNDPSLP D+REE R KLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFELKRNLFKAICNDPSLPKDIREEHRNKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Tan0020089 vs. TAIR 10
Match: AT2G34520.1 (mitochondrial ribosomal protein S14 )

HSP 1 Score: 146.7 bits (369), Expect = 9.8e-36
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 3   GDNRNILDHYRRQLAAKFELKRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRN 62
           G  RN  DH RR LAA+FEL+RKLYKA C DP LP+++R++ RYKLSKLPRNS+F R+RN
Sbjct: 66  GVKRNSADHRRRLLAARFELRRKLYKAFCKDPDLPSEMRDKNRYKLSKLPRNSAFARIRN 125

Query: 63  RCIFTGRPRAVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           RC+FTGR R+V +LFRVSRIVFR LASKG +MG+ KSSW
Sbjct: 126 RCVFTGRSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164

[Close]

BLAST of Tan0020089 vs. TAIR 10
Match: ATCG00330.1 (chloroplast ribosomal protein S14 )

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 13  RRQLAAKFEL-KRKLYKAVCNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFTGRPR 72
           R++L  K+ L +R   K +   PSL    + +   KL   PRNS+ TRL  RC  TGRPR
Sbjct: 13  RQKLEKKYHLIRRSSKKEISKIPSLSE--KWKIHGKLQSPPRNSAPTRLHRRCFSTGRPR 72

Query: 73  AVYQLFRVSRIVFRDLASKGLIMGVKKSSW 102
           A Y+ F +S  + R++    L+ G  +SSW
Sbjct: 73  ANYRDFGLSGHILREMVQACLLPGATRSSW 100

The following BLAST results are available for this feature:

BLAST of Tan0020089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14875	8.6e-37	72.45	Ribosomal protein S14, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS14 PE...	[more]
P05716	7.3e-36	72.45	Ribosomal protein S14, mitochondrial OS=Vicia faba OX=3906 GN=RPS14 PE=3 SV=2	[more]
P49387	5.2e-34	69.39	Ribosomal protein S14, mitochondrial OS=Brassica napus OX=3708 GN=RPS14 PE=3 SV=...	[more]
P26873	1.1e-31	68.04	Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS14 P...	[more]
P46752	4.3e-20	56.52	Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS14 ...	[more]

BLAST of Tan0020089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134507.1	1.2e-48	99.01	uncharacterized protein LOC111006733 [Momordica charantia] >XP_022134508.1 uncha...	[more]
XP_038884392.1	2.6e-46	94.06	ribosomal protein S14, mitochondrial [Benincasa hispida]	[more]
XP_022938933.1	2.6e-46	95.05	uncharacterized protein LOC111444996 [Cucurbita moschata] >XP_022938934.1 unchar...	[more]
XP_023550870.1	3.4e-46	94.06	uncharacterized protein LOC111808878 [Cucurbita pepo subsp. pepo]	[more]
KAG7032953.1	7.5e-46	94.06	Ribosomal protein S14, mitochondrial, partial [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Tan0020089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C264	6.0e-49	99.01	uncharacterized protein LOC111006733 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1FKA4	1.2e-46	95.05	uncharacterized protein LOC111444996 OS=Cucurbita moschata OX=3662 GN=LOC1114449...	[more]
A0A5D3CKB3	3.7e-43	86.14	Ribosomal protein S14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A1S4E169	3.7e-43	86.14	ribosomal protein S14, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496488 PE=...	[more]
A0A0A0LSR8	2.4e-42	85.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386130 PE=3 SV=1	[more]

BLAST of Tan0020089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34520.1	9.8e-36	69.70	mitochondrial ribosomal protein S14	[more]
ATCG00330.1	3.0e-08	38.89	chloroplast ribosomal protein S14	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1480		coord: 3..91 e-value: 3.5E-32 score: 112.6
None	No IPR available	PANTHER	PTHR19836:SF30	RIBOSOMAL PROTEIN S14	coord: 3..101
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 8..101
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 47..100 e-value: 2.4E-24 score: 84.8
IPR001209	Ribosomal protein S14	PANTHER	PTHR19836	30S RIBOSOMAL PROTEIN S14	coord: 3..101
IPR018271	Ribosomal protein S14, conserved site	PROSITE	PS00527	RIBOSOMAL_S14	coord: 63..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020089.1	Tan0020089.1	mRNA
Tan0020089.2	Tan0020089.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome