Tan0013670 (gene) Snake gourd v1

Overview
NameTan0013670
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG05: 79640539 .. 79641030 (+)
RNA-Seq ExpressionTan0013670
SyntenyTan0013670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCCATAATGCCAAAAGTCTCCTCTTTTGCACATTTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTACTACTTGTTCTCATCTTCAGCTTCCATGTCCCCACATGTCGTTTCTTCTCTCACTTCCTTTTTACTAGGCCTTCTTTCTACTACAATTGTGCTGGCCATAGTAAGCGGCTCTGCAATCCCATTCCAATATCCAGTCCCAAAAGGTTGGCTTGCGGTGGTTGGGCTTTACGAGGGACGCCTATCGCCTTACTCGTGGTAGTGAGTTGGTTGACTCAGAAAGACTCGACAGGAGTCGTTGCTGAGAACTGGGGGTCTCGGGGCTGCACTGTTCTGACCATTTCGGAGCACAAGGCAGGGGCTGAAGCAATTGGTGGCTGTACTCCTTGGGTTCTTGTGGGAATGATACTGCTCCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGTATGTGA

mRNA sequence

ATGACTCCCATAATGCCAAAAGTCTCCTCTTTTGCACATTTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTACTACTTGTTCTCATCTTCAGCTTCCATGTCCCCACATGTCGTTTCTTCTCTCACTTCCTTTTTACTAGGCCTTCTTTCTACTACAATTGTGCTGGCCATAGTAAGCGGCTCTGCAATCCCATTCCAATATCCAGTCCCAAAAGGTTGGCTTGCGGTGGTTGGGCTTTACGAGGGACGCCTATCGCCTTACTCGTGGTAGTGAGTTGGTTGACTCAGAAAGACTCGACAGGAGTCGTTGCTGAGAACTGGGGGTCTCGGGGCTGCACTGTTCTGACCATTTCGGAGCACAAGGCAGGGGCTGAAGCAATTGGTGGCTGTACTCCTTGGGTTCTTGTGGGAATGATACTGCTCCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGTATGTGA

Coding sequence (CDS)

ATGACTCCCATAATGCCAAAAGTCTCCTCTTTTGCACATTTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTACTACTTGTTCTCATCTTCAGCTTCCATGTCCCCACATGTCGTTTCTTCTCTCACTTCCTTTTTACTAGGCCTTCTTTCTACTACAATTGTGCTGGCCATAGTAAGCGGCTCTGCAATCCCATTCCAATATCCAGTCCCAAAAGGTTGGCTTGCGGTGGTTGGGCTTTACGAGGGACGCCTATCGCCTTACTCGTGGTAGTGAGTTGGTTGACTCAGAAAGACTCGACAGGAGTCGTTGCTGAGAACTGGGGGTCTCGGGGCTGCACTGTTCTGACCATTTCGGAGCACAAGGCAGGGGCTGAAGCAATTGGTGGCTGTACTCCTTGGGTTCTTGTGGGAATGATACTGCTCCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGTATGTGA

Protein sequence

MTPIMPKVSSFAHFLTSDPSPFPSLLLLVLIFSFHVPTCRFFSHFLFTRPSFYYNCAGHSKRLCNPIPISSPKRLACGGWALRGTPIALLVVVSWLTQKDSTGVVAENWGSRGCTVLTISEHKAGAEAIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
Homology
BLAST of Tan0013670 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 125/164 (76.22%), Postives = 135/164 (82.32%), Query Frame = 0

Query: 1   MTPIMPKVSSFAHFLTSDPSPFPSLLLLVLIFSFHVPTCRFFSHFLF-TRPSFYYNCAGH 60
           M PIM KVSSF HFLTSDPSPFPSLLLL+LIF+FH+  CRFFS+  F   P FYYNC G+
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  SKRLCNPIPISSPKRLACGGWALRGTPIALLVVVSWLTQKDSTGVVAENWGSRGCTVLTI 120
            K LCNPIPISSP+RL  GGWALR  PIALLVVVSWL+QK+S GV A  W S+G  V TI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SEHKAGAEAIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           SEHKA  E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of Tan0013670 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0

Query: 1   MTPIMPKVSSFAHFLTSDPSPFPSLLLLVLIFSFHVPTCRFFSHFLFT-RPSFYYNCAGH 60
           M P+M KV SF +FLTSDPSPFPSLLL++LIF+FH+P CRFFS+  F   P FYYNC G+
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  SKRLCNPIPISSPKRLACGGWALRGTPIALLVVVSWLTQKDSTGVVAENWGSRGCTVLTI 120
            K LCNPIP SSP+RL  GGWALR  PIALLVVVSWL+QK+S GV A  WGS+GC V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAGAEAIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           SEHKA  E IGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of Tan0013670 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 120/163 (73.62%), Postives = 135/163 (82.82%), Query Frame = 0

Query: 1   MTPIMPKVSSFAHFLTSDPSPFPSLLLLVLIFSFHVPTCRFFSHFLFTRPSFYYNCAGHS 60
           M PIMPK+SS  H LTSDPSPFPSLLLL+LIF+ H+PTCRFFS+FL   PS YY+CAG S
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60

Query: 61  KRLCNPIPISSPKRLACGGWALRGTPIALLVVVSWLTQKDSTGVVAENWGSRGC---TVL 120
             LCNP+ +SSPKRL CGGW+LR  PIALLVVVSWLT+KD+ GV A NWGSR C   T+L
Sbjct: 61  NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120

Query: 121 TISEHKAGAEAIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 161
            + +H+  AE IGGCTPWVLVGMILLLFNMAQRQALIRHCLFV
Sbjct: 121 DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

BLAST of Tan0013670 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0

Query: 1   MTPIMPKVSSFAHFLTSDPSPFPSLLLLVLIFSFHVPTCRFFSHFLFT-RPSFYYNCAGH 60
           M P+M KV SF +FLTSDPSPFPSLLL++LIF+FH+P CRFFS+  F   P FYYNC G+
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  SKRLCNPIPISSPKRLACGGWALRGTPIALLVVVSWLTQKDSTGVVAENWGSRGCTVLTI 120
            K LCNPIP SSP+RL  GGWALR  PIALLVVVSWL+QK+S GV A  WGS+GC V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAGAEAIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           SEHKA  E IGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of Tan0013670 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.8e-61
Identity = 122/160 (76.25%), Postives = 132/160 (82.50%), Query Frame = 0

Query: 5   MPKVSSFAHFLTSDPSPFPSLLLLVLIFSFHVPTCRFFSHFLF-TRPSFYYNCAGHSKRL 64
           M KVSSF HFLTSDPSPFPSLLLL+LIF+FH+  CRFFS+  F   P FYYNC G+ K L
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPIPISSPKRLACGGWALRGTPIALLVVVSWLTQKDSTGVVAENWGSRGCTVLTISEHK 124
           CNPIPISSP+RL  GGWALR  PIALLVVVSWL+QK+S GV A  W S+G  V TISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AGAEAIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           A  E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8653331.12.4e-6276.22hypothetical protein Csa_023242 [Cucumis sativus][more]
KAA0043344.13.2e-6274.39hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAG6573437.13.2e-6273.62hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5A7TJ521.5e-6274.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LW233.8e-6176.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0013670.1Tan0013670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane