Spg028129 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028129
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein PALE CRESS, chloroplastic
Locationscaffold2: 45484890 .. 45487758 (+)
RNA-Seq ExpressionSpg028129
SyntenySpg028129
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGCTATGGAAAAATAGGGAAAATAAGCAGAAAAAAAGCGGGAATAAGAAAAATTAAAAAACGAAAGGCGCCCGGTCACACTTTCGGAAAAAGACTCAATAATCTCTCTCTGTCTTTGCTCAAAAAGTACGCACTTCACATTCATCTTCATCTTCTCTTTCGCCTTCATCTGTGTTTTCTCCTTCGTCTTTGTCTTCCCCTTTTCTCCATTAGGTTTTCTTATCAGTCGTACGTGCAGAGCCCTAACTCTGTTATCTCCTTCATCGTGCGACAACATCGAATCCGATAATGAACCTACGGCTTCCAGCACTTGGAATTCTAGGTATTTGATTTTAGTAGCCAATGGTGTATCTTTTTTTTTTTTTCTTTTTTTCTCAAAGATTAAGTTTTAAGAGGTAGAATGTTTGTCTCATGTTGTTTAAATCTAACCTGTTCAACATTAGGAATTGCAAGCTCGGCAAAAAGAGAAGACGAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGAAAGAAAGGAAGAATATCGTGAAATTGAGATGCGTCTGAAAGGATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGGTAATTAACCATTAGCGGTAGCTTTTATTGTACTTCTAATCATTAACTTGATCTTTCAAAAAGTAAGGTCGTATCTTCAATTCGGCATGAAGTATTCTTGTTCTTCCTTACGGCTAAGCTTTTATGGCAATGCCCTAAAAGGTAGTCTTAAGTAGACAAAAACCATGAGTTCCCAATCAAACAATTAGAGTTCAGTTCACTTCCTATAGCTTGCACGGTGACTTGGCTATGGTTTGAGAATGAAGGATATTGAGGGTCTTTTATGAGTATATTCTTCTTGGATATGATTATTGTGTTCTACTCATGGGTAGTATTCATGGTGATTTTTCTTTGAATTTTCTCAATTTCATACCATTTTTCACAGAAAGCTCTAAATTATTGCAAACTGGCTTAGTGACGTACTGATATTGTAGTTGTTTATCAATTGGAATGCAGAAAATTGAGGAAGCTGTTGAGAAAGGAGAACTAACAGAGCTTGTTCTACTAGTGATATGGAATCAACTTGATTTAGCAAGTCGTGATGTATGTTAGCCTTCAAATTCCTTTAATTTCCATTTGCTTGTTAATTTTGGAGGGAGCCTAGTTGTATGTGCTTATAACTAGTTCTTTCTTTTTCTTCCTCCTAAGATTTTGTGCCATCTTTTCATCAATGCATAGAGAAATTCAGCAAAAATGGCAAGCAGGGGCAGCGAGGGAAGATGAATCTTGACCATTCTCGAATTATATATGTGCAGAACTATAGGTAAGGAATTATAGATATATCTATGCCCTTGAGACATGTTCTTTTTTCTTCTTTTCTTGCATTTTGGTTGTTTTGATTTGTGAACTGAGTACACTGCACAACACTACCTTCATCAATGATGAGTCTTAAGCCATCAATGTGAAGCTTTCCATGATGTCCACTCACAAACAATTGTTGGCTTCTCATCATTATTCTCAGATAGTTCCGGTAAGAATTATTTCAAGTTATATAATTCATTTTCCATTAAAATTAAAAGAGAATTCTGAATTAATTAAGAGTGTTTAAAGTGATATTTCACGTTTGGGATATTCCAAACGTTTTTCCTCTCACTTACACCCATTATTTTGGGAAATTTGGTTTCTCTGGGTTTCAAAAGTTTGAGTTGTTCTTCAACATCTTTCTCTTCCTCTAAACATGCGTGGACTGCAATCAATCTGCAGTTTTTTATGCTATCTTTTGTCTCCAAACGCATATCGTCCTGGAATTAATTACAAAAATTATTATAACTTTGTTGTTTTTCTTGAAATTGTGACATATTTATTATAGGTTGTTTGGTTGAGAGAGATTTAGCTTCTTGCCTCATCATGAACCCAAACCAGATTGGAAAGGAACTTCTTGTGTTCTTCAGGTACCTCTTTCACCAACTCTAAATAACAATACTTCTTACATTAATTATTTTGTTTTGGATTTGATATAGAATTAAGACAATAATGTTTGATAGCATTTCTGTTCCTTTTTTTTTTTTTTTTCTCTCTTGTTTATTTTTCAATGATCCTTGGTTTTAGAAGAAAGAAAAGCAAAAATGTGTTTGATAATGACTTTTTATGTCTTGTATTTTTATTAATATGTTTCATGTTACTTGTTTCTTATTCTCTAAAATTTCAAATTTCAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGTGAATAGGAAACCAAAAGGTGAATTATCTACCCATGGAGGTCAGTTTGCCAACTACCTCTCAAGTTACCTTCTACCACAGTTGAATAATTTGTCTGCAGAAAATTTACATGACTTATTTCACATTGCCAACCAGGAGAAGCTTCTTATTTATTCTTATTTCACATTGCCATCCAATACCTTGCCGCTGTACAATATAAGATAAAGCGATTATCCCTCTTTCTTTTCTTTACCTTGTTGCTTTAACATCTTCTCCTATATATATAAGCTAACTTTTGATTGACCTTACATTTTACTACTTATATATGTTTGAGGCATTTTTCTTGAATAATATAGATTTTATGTGTTCTGCTATTGCTTATGGTTTCCTTTGAGGGGTTGAAATTTTGAGTTTTGTTTAGATGTCATATTGGTGTGGTTTCTTATTGTTTATTCAGGTAGACTACCCTAATATGATTGTTGGTTTGCTGAGGATTTCAGTTTTATTCCACACTATGGTTGGATTTCAGATTGTGAACTTTTGCAATGCAGTATAA

mRNA sequence

ATGCGTCTGAAAGGATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGTTGAGAAAGGAGAACTAACAGAGCTTGTTCTACTAGTGATATGGAATCAACTTGATTTAGCAAGTCGTGATGTATGTTGTTTGGTTGAGAGAGATTTAGCTTCTTGCCTCATCATGAACCCAAACCAGATTGGAAAGGAACTTCTTGTGTTCTTCAGGAAACCAAAAGGTGAATTATCTACCCATGGAGACTACCCTAATATGATTGTTGGTTTGCTGAGGATTTCAGTTTTATTCCACACTATGGTTGGATTTCAGATTGTGAACTTTTGCAATGCAGTATAA

Coding sequence (CDS)

ATGCGTCTGAAAGGATTTCCAGAAGAAGATGTCAGAAAAGCTCGAAAACTGGTTTCAAGCTTTATTAGAGCTGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGTTGAGAAAGGAGAACTAACAGAGCTTGTTCTACTAGTGATATGGAATCAACTTGATTTAGCAAGTCGTGATGTATGTTGTTTGGTTGAGAGAGATTTAGCTTCTTGCCTCATCATGAACCCAAACCAGATTGGAAAGGAACTTCTTGTGTTCTTCAGGAAACCAAAAGGTGAATTATCTACCCATGGAGACTACCCTAATATGATTGTTGGTTTGCTGAGGATTTCAGTTTTATTCCACACTATGGTTGGATTTCAGATTGTGAACTTTTGCAATGCAGTATAA

Protein sequence

MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDVCCLVERDLASCLIMNPNQIGKELLVFFRKPKGELSTHGDYPNMIVGLLRISVLFHTMVGFQIVNFCNAV
Homology
BLAST of Spg028129 vs. NCBI nr
Match: MCH99641.1 (PAC [Trifolium medium])

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-21
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
          MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV
Sbjct: 1  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAERGELTELVLMVIWNRLDLARRDV 60

Query: 61 CCLVERDLASCLIMNPNQIGKELLVFF 88
             +  D  S +  + N I   ++V F
Sbjct: 61 TICIVEDFVSPIFGSMNNIVVSVVVKF 87

BLAST of Spg028129 vs. NCBI nr
Match: MCH86628.1 (PAC [Trifolium medium] >MCI03190.1 PAC [Trifolium medium])

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-21
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV
Sbjct: 36  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAERGELTELVLMVIWNRLDLARRDV 95

Query: 61  CCLVERDLASCLIMNPNQIGKELLVFF 88
              +  D  S +  + N I   ++V F
Sbjct: 96  TICIVEDFVSPIFGSMNNIVVSVVVKF 122

BLAST of Spg028129 vs. NCBI nr
Match: VVA14020.1 (PREDICTED: PALE CRESS [Prunus dulcis])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD 
Sbjct: 54  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRD- 113

Query: 61  CCLVERDLASCLIMNPNQIGKELL 85
               E+D+   L +   ++  E+L
Sbjct: 114 ---EEKDVIRSLDLLYRRVEAEIL 133

BLAST of Spg028129 vs. NCBI nr
Match: XP_034227598.1 (protein PALE CRESS, chloroplastic isoform X1 [Prunus dulcis] >VVA14019.1 PREDICTED: PALE CRESS [Prunus dulcis])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD 
Sbjct: 99  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRD- 158

Query: 61  CCLVERDLASCLIMNPNQIGKELL 85
               E+D+   L +   ++  E+L
Sbjct: 159 ---EEKDVIRSLDLLYRRVEAEIL 178

BLAST of Spg028129 vs. NCBI nr
Match: CAB4322055.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD 
Sbjct: 54  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRD- 113

Query: 61  CCLVERDLASCLIMNPNQIGKELL 85
               E+D+   L +   ++  E+L
Sbjct: 114 ---EEKDVIRSLDLLYRRVEAEIL 133

BLAST of Spg028129 vs. ExPASy Swiss-Prot
Match: Q39089 (Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.9e-19
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 2   RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD 60
           RLK FPE+D+RKARKLVSSFIRAAEEVEE+IEEA EKGEL ELVL++IWN+LDLA RD
Sbjct: 98  RLKEFPEQDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRD 155

BLAST of Spg028129 vs. ExPASy TrEMBL
Match: A0A392MIU4 (PAC (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0007487 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV
Sbjct: 36  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAERGELTELVLMVIWNRLDLARRDV 95

Query: 61  CCLVERDLASCLIMNPNQIGKELLVFF 88
              +  D  S +  + N I   ++V F
Sbjct: 96  TICIVEDFVSPIFGSMNNIVVSVVVKF 122

BLAST of Spg028129 vs. ExPASy TrEMBL
Match: A0A392NJP7 (PAC OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1  MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
          MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA E+GELTELVL+VIWN+LDLA RDV
Sbjct: 1  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAERGELTELVLMVIWNRLDLARRDV 60

Query: 61 CCLVERDLASCLIMNPNQIGKELLVFF 88
             +  D  S +  + N I   ++V F
Sbjct: 61 TICIVEDFVSPIFGSMNNIVVSVVVKF 87

BLAST of Spg028129 vs. ExPASy TrEMBL
Match: A0A5E4EGC0 (PREDICTED: PALE CRESS OS=Prunus dulcis OX=3755 GN=ALMOND_2B015261 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD 
Sbjct: 99  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRD- 158

Query: 61  CCLVERDLASCLIMNPNQIGKELL 85
               E+D+   L +   ++  E+L
Sbjct: 159 ---EEKDVIRSLDLLYRRVEAEIL 178

BLAST of Spg028129 vs. ExPASy TrEMBL
Match: A0A4Y1S0U1 (Pale cress protein OS=Prunus dulcis OX=3755 GN=Prudu_023078 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD 
Sbjct: 94  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRD- 153

Query: 61  CCLVERDLASCLIMNPNQIGKELL 85
               E+D+   L +   ++  E+L
Sbjct: 154 ---EEKDVIRSLDLLYRRVEAEIL 173

BLAST of Spg028129 vs. ExPASy TrEMBL
Match: A0A5E4EGD7 (PREDICTED: PALE CRESS OS=Prunus dulcis OX=3755 GN=ALMOND_2B015261 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MRLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRDV 60
           MRLKG+PEEDVRKARKL+SSFIRAAEEVEEKIEEA EKGELTELVL+VIWN+LDLA RD 
Sbjct: 54  MRLKGYPEEDVRKARKLISSFIRAAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRD- 113

Query: 61  CCLVERDLASCLIMNPNQIGKELL 85
               E+D+   L +   ++  E+L
Sbjct: 114 ---EEKDVIRSLDLLYRRVEAEIL 133

BLAST of Spg028129 vs. TAIR 10
Match: AT2G48120.1 (pale cress protein (PAC) )

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-20
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 2   RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD 60
           RLK FPE+D+RKARKLVSSFIRAAEEVEE+IEEA EKGEL ELVL++IWN+LDLA RD
Sbjct: 98  RLKEFPEQDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRD 155

BLAST of Spg028129 vs. TAIR 10
Match: AT2G48120.2 (pale cress protein (PAC) )

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-20
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 2   RLKGFPEEDVRKARKLVSSFIRAAEEVEEKIEEAVEKGELTELVLLVIWNQLDLASRD 60
           RLK FPE+D+RKARKLVSSFIRAAEEVEE+IEEA EKGEL ELVL++IWN+LDLA RD
Sbjct: 92  RLKEFPEQDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRD 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MCH99641.14.8e-2167.82PAC [Trifolium medium][more]
MCH86628.14.8e-2167.82PAC [Trifolium medium] >MCI03190.1 PAC [Trifolium medium][more]
VVA14020.11.5e-1969.05PREDICTED: PALE CRESS [Prunus dulcis][more]
XP_034227598.11.5e-1969.05protein PALE CRESS, chloroplastic isoform X1 [Prunus dulcis] >VVA14019.1 PREDICT... [more]
CAB4322055.11.5e-1969.05unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
Q390897.9e-1982.76Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV... [more]
Match NameE-valueIdentityDescription
A0A392MIU42.3e-2167.82PAC (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0007487 PE=4 SV=1[more]
A0A392NJP72.3e-2167.82PAC OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A0A5E4EGC07.4e-2069.05PREDICTED: PALE CRESS OS=Prunus dulcis OX=3755 GN=ALMOND_2B015261 PE=4 SV=1[more]
A0A4Y1S0U17.4e-2069.05Pale cress protein OS=Prunus dulcis OX=3755 GN=Prudu_023078 PE=4 SV=1[more]
A0A5E4EGD77.4e-2069.05PREDICTED: PALE CRESS OS=Prunus dulcis OX=3755 GN=ALMOND_2B015261 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G48120.15.6e-2082.76pale cress protein (PAC) [more]
AT2G48120.25.6e-2082.76pale cress protein (PAC) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..38
IPR034563Protein PALE CRESSPANTHERPTHR37219PROTEIN PALE CRESS, CHLOROPLASTICcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028129.1Spg028129.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071482 cellular response to light stimulus
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0009658 chloroplast organization
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0048366 leaf development
cellular_component GO:0009501 amyloplast
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0009509 chromoplast
cellular_component GO:0009513 etioplast
cellular_component GO:0009537 proplastid
cellular_component GO:0009536 plastid
molecular_function GO:0043621 protein self-association
molecular_function GO:0019843 rRNA binding