Spg009814 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009814
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin ligase complex SCF subunit
Location	scaffold7: 5797587 .. 5800017 (-)
RNA-Seq Expression	Spg009814
Synteny	Spg009814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGCTATAACGTCAACCACTCCAGCAACCTTGGATCAAACCACATTACCTTCTTCTGGAACCACTCCTCTTGCTGATGCTTTGTCATCTAGTGCACCCTCATTTCCTATTGTACATGCTCCAACCACGTTTGCTGAAGTGCCTACTTTGACAACTTCTACAATCACCTTCAATGTGGAACCTACACCGTCAAAGTCTGAAGCTATGTTCGTAGTAGGATCTGACTCATCGATTTCCATGCCACCAAGTTCTGATGACTTTGTTGCTTTTGAGGTTCCTAATGGAGTGGATGCAAGACCACCAACGTCGAATTGGGTCATTCGAAGTTGCAAGCCCAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAGCCTCTTGTCTCAATTGTATGCTCAAACATGTCATGAAAAACCAATCTTACAAGATATCAGAAACCTTATACATACTTATTCAATACTACTCATTTTCTCTTTGTACTTATACCAAAGTCCAATTACCTATCAAGCCTAAGTAGATATTTAATTACTTGTGAGGCTAACGATTGGTTGAAGGTGTCCATTTGAAATTCTTATATATAATTAAACAACAAAAGACAAAGTTACTTTCAATCAAGACGGATTAGTTATATCAATACGATAATTTTATTGGTTCAATTTACTTTTATTTTTAGTTGTTAGTTTTTAATTTATGACCATGTATGGTGTCACGCCAACCAAATCACATGAGATGCAACACCAACTTTTAGCTGCTATTTGACTTCTAAAGATCGACCACAACTATATCAAGTCTTTTTTTTTAATTACAAGAGAAAATTATTTTTCAAAAAAAAAAAAGTACAAGAGAAAAGAGATATAATTAAAAAAATAAGAAAAAAAAAGAAGAATTATGAAAAGTAATGGAGTTCAAAGCGGCTATAATATATATATATAGTAGTTCAAATTTTAACATATAATCTAATTAACTAAATAACACATCTTTTAAATTACTATCTCACTCTATACTATTGTTAAATAAAATATTGTCAAGTTAAACATAGCTCAACTTGGTTAAACTTTAAAGCATATATCATCTATCAAAAGATCTGAAATTTGAATCTTCCATTTCATATGATGTTAGACTAAAAGAAAAAAAAAAGAAAAGAAAAAGTAGGAAGACCAAAAAATTAAAAGGGATCAAATATGGAGAAGAAGAAGAAGAAAAAAAAAAAAAAAAAAAAAAAGAAAGAATAATAGTTGTTTAATATTAGGTATTTAAAGTCATGTTAAATTGTACAAACTACCATTAAAATTTGGAGAGACATTGAAAATTTTCATTATAATCCTAAAAACATTGAAATTTAATTATTTATATATATATATATATATATATATATATATATATATATATATATATATTTGGAAGATTTTTCATTAAAATGATAATGAAAATTGTCCCTATACAACTAATATGTAAAAATTGATGCAATAAAAAAAATTAAAACGAGTATATGATATCATTTGATTAAATTGATTCCAAAGTAAAATAAAAGTCATCTTTTTTTTTAAGAGAATAAAAAGTCATTTGAACATAGTTCAGTTAATCAAAGTATACTCTTTATCCATGAATAAAAAATTTGAATCCCTTCCCACAAACTTCTAGATCATTATGTCAATTGAATTAGGCTCACGTTGTTCAACAATATCCGGGGGATTCAAACCTCTCGCGTTTGGCTCTATGCTCAAATTTCTGTCAAACTTTCTTGAATGAGTTCAAGAAAATAATCTTGGACGTCAAGAAGAATCAGTTGAAATCTGTAACAGAATTAAGCAAAAGCCCTACAATGATTGGGGAAACGAATTCTGCCCTAAACCTTCAAATTCCGCCTCCGATCGCTCTTTCTCTCTCTATAAATTTCAATTCCGTTCTCCCTTCTTCAATTCATTCATCTTCATCTTCATCTTCATCTTCAATCCTGTTGATTTCGCGATGTCTTCATCAACCGGTCCCAAGATCCTTCAACTCAAATCTTCCGATGACGAAATTTACAGAGTCGAAGAGGCCGTCGCGAAGCAATCCGGACTGATTCGTAAATTTCTCGAAGTCGTCGGCGAAGAAAACGCTCCGATTCCGCTGCCGAATGTGAGCGGAAGAATGTTGAGAATGGCGATGGAGTGGAGTACGAAGAACGCCGACGAGAAATTGGCGAAGGAAGAGCTGGAAGAATGGGAAAGTAAGTTCATGGAAGTGGATATGGATGTGATGTTTGAGCTGATATTGGCGGCCAATAATCTGGAATTGACCGATTTGTTGAATCGGCTCTGCAAGAAAGTGGCCGGAATCATGGCCGGAAAGACGCCGGAGGAACTTCGGAAGATTTTTAAGATTGAGAATGATTTTTCGCCGGAAGAAGAGGCGGAGCTCATGAAGCGATTTTGA

mRNA sequence

ATGCTCGCTATAACGTCAACCACTCCAGCAACCTTGGATCAAACCACATTACCTTCTTCTGGAACCACTCCTCTTGCTGATGCTTTGTCATCTAGTGCACCCTCATTTCCTATTGTACATGCTCCAACCACGTTTGCTGAAGTGCCTACTTTGACAACTTCTACAATCACCTTCAATGTGGAACCTACACCGTCAAAGTCTGAAGCTATGTTCGTAGTAGGATCTGACTCATCGATTTCCATGCCACCAAGTTCTGATGACTTTGTTGCTTTTGAGGTTCCTAATGGAGTGGATGCAAGACCACCAACGTCGAATTGGGTCATTCGAAGTTGCAAGCCCAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAGCCTCTTGTCTCAATTGTATGCTCAAACATAATTAAGCAAAAGCCCTACAATGATTGGGGAAACGAATTCTGCCCTAAACCTTCAAATTCCGCCTCCGATCGCTCTTTCTCTCTCTATAAATTTCAATTCCGTTCTCCCTTCTTCAATTCATTCATCTTCATCTTCATCTTCATCTTCAATCCTGTTGATTTCGCGATGTCTTCATCAACCGGTCCCAAGATCCTTCAACTCAAATCTTCCGATGACGAAATTTACAGAGTCGAAGAGGCCGTCGCGAAGCAATCCGGACTGATTCGTAAATTTCTCGAAGTCGTCGGCGAAGAAAACGCTCCGATTCCGCTGCCGAATGTGAGCGGAAGAATGTTGAGAATGGCGATGGAGTGGAGTACGAAGAACGCCGACGAGAAATTGGCGAAGGAAGAGCTGGAAGAATGGGAAAGTAAGTTCATGGAAGTGGATATGGATGTGATGTTTGAGCTGATATTGGCGGCCAATAATCTGGAATTGACCGATTTGTTGAATCGGCTCTGCAAGAAAGTGGCCGGAATCATGGCCGGAAAGACGCCGGAGGAACTTCGGAAGATTTTTAAGATTGAGAATGATTTTTCGCCGGAAGAAGAGGCGGAGCTCATGAAGCGATTTTGA

Coding sequence (CDS)

ATGCTCGCTATAACGTCAACCACTCCAGCAACCTTGGATCAAACCACATTACCTTCTTCTGGAACCACTCCTCTTGCTGATGCTTTGTCATCTAGTGCACCCTCATTTCCTATTGTACATGCTCCAACCACGTTTGCTGAAGTGCCTACTTTGACAACTTCTACAATCACCTTCAATGTGGAACCTACACCGTCAAAGTCTGAAGCTATGTTCGTAGTAGGATCTGACTCATCGATTTCCATGCCACCAAGTTCTGATGACTTTGTTGCTTTTGAGGTTCCTAATGGAGTGGATGCAAGACCACCAACGTCGAATTGGGTCATTCGAAGTTGCAAGCCCAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAGCCTCTTGTCTCAATTGTATGCTCAAACATAATTAAGCAAAAGCCCTACAATGATTGGGGAAACGAATTCTGCCCTAAACCTTCAAATTCCGCCTCCGATCGCTCTTTCTCTCTCTATAAATTTCAATTCCGTTCTCCCTTCTTCAATTCATTCATCTTCATCTTCATCTTCATCTTCAATCCTGTTGATTTCGCGATGTCTTCATCAACCGGTCCCAAGATCCTTCAACTCAAATCTTCCGATGACGAAATTTACAGAGTCGAAGAGGCCGTCGCGAAGCAATCCGGACTGATTCGTAAATTTCTCGAAGTCGTCGGCGAAGAAAACGCTCCGATTCCGCTGCCGAATGTGAGCGGAAGAATGTTGAGAATGGCGATGGAGTGGAGTACGAAGAACGCCGACGAGAAATTGGCGAAGGAAGAGCTGGAAGAATGGGAAAGTAAGTTCATGGAAGTGGATATGGATGTGATGTTTGAGCTGATATTGGCGGCCAATAATCTGGAATTGACCGATTTGTTGAATCGGCTCTGCAAGAAAGTGGCCGGAATCATGGCCGGAAAGACGCCGGAGGAACTTCGGAAGATTTTTAAGATTGAGAATGATTTTTCGCCGGAAGAAGAGGCGGAGCTCATGAAGCGATTTTGA

Protein sequence

MLAITSTTPATLDQTTLPSSGTTPLADALSSSAPSFPIVHAPTTFAEVPTLTTSTITFNVEPTPSKSEAMFVVGSDSSISMPPSSDDFVAFEVPNGVDARPPTSNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNIIKQKPYNDWGNEFCPKPSNSASDRSFSLYKFQFRSPFFNSFIFIFIFIFNPVDFAMSSSTGPKILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTKNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKIFKIENDFSPEEEAELMKRF

Homology

[Close]

BLAST of Spg009814 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 5.1e-38
Identity = 115/296 (38.85%), Postives = 151/296 (51.01%), Query Frame = 0


Query: 53  TSTITFNVEPTPSKSEAMFVVGSDSSI--SMPPSSDDFVAFEVPNGVD-ARPPTSNWVIR 112
           T TI     P P+ SEA  V G  SS+  SMPPS  DFVAFEVP+ V  A PP  +W+IR
Sbjct: 37  TPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVSTANPPMPDWMIR 96

Query: 113 SCKPKGRMRYSAPSDRRNSEPLVSIVCSNIIKQKPYNDWGNEFCPKPSNSASDRSFSLYK 172
           SCKPKGRMR                                                   
Sbjct: 97  SCKPKGRMR--------------------------------------------------- 156

Query: 173 FQFRSPFFNSFIFIFIFIFNPVDFAMSSSTGPKILQLKSSDDEIYRVEEAVAKQSGLIRK 232
                                                 SS++EI++V E VAKQS ++R 
Sbjct: 157 --------------------------------------SSENEIFKVSEEVAKQSVVVRI 216

Query: 233 FLEVVGEEN--APIPLPNVSGRMLRMAMEWSTKNADEKLAKEELEEWESKFME-VDMDVM 292
           FLE     N    IPLPN+SGR+L M +EW   + +EKLA+E L  W++KF+E +D+D++
Sbjct: 217 FLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVEEKLAEEALHAWKTKFLEDLDLDLL 243

Query: 293 FELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKIFKIENDFSPEEEAELMKR 343
           FELI+AAN LE+TDL +  C+ VA  ++GK+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 277 FELIMAANYLEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQ 243

[Close]

BLAST of Spg009814 vs. NCBI nr
Match: XP_022139312.1 (SKP1-like protein 14 [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 4.1e-35
Identity = 81/138 (58.70%), Postives = 110/138 (79.71%), Query Frame = 0


Query: 206 LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTKNADEK 265
           LK+ D++IY VEEA+AKQSG+IR FLE    +   IPL  V+ RML++ MEW   +A E+
Sbjct: 6   LKTCDNQIYEVEEAIAKQSGVIRNFLEDFDGDCVEIPLLKVNERMLKVVMEWCAMHAGEE 65

Query: 266 LAKEELEEWESKFMEV-DMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKI 325
           L ++EL++WESKF+ + D+D ++E+++AAN LE+ DL++RLCKKVA I+AGK PEE+RKI
Sbjct: 66  LEEKELQDWESKFVAMDDLDFLYEVLMAANYLEVVDLVHRLCKKVADIIAGKQPEEIRKI 125

Query: 326 FKIENDFSPEEEAELMKR 343
           F IENDF+PEEEAEL KR
Sbjct: 126 FNIENDFTPEEEAELRKR 143

[Close]

BLAST of Spg009814 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-31
Identity = 76/144 (52.78%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEEN--APIPLPNVSGRMLRMAMEWST 261
           +I+ L+SS++EI++V E VAKQS ++R FLE     N    IPLPN+SGR+L M +EW  
Sbjct: 2   RIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIV 61

Query: 262 KNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 321
            + +EKLA+E L  W++KF+E +D+D++FELI+AAN LE+TDL +  C+ VA  ++GK+P
Sbjct: 62  MHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSP 121

Query: 322 EELRKIFKIENDFSPEEEAELMKR 343
           EE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 EEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-31
Identity = 76/147 (51.70%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPNVSGRMLRMAME 261
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLPN+SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 262 WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 321
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 322 KTPEELRKIFKIENDFSPEEEAELMKR 343
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-31
Identity = 76/147 (51.70%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPNVSGRMLRMAME 261
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLPN+SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 262 WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 321
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 322 KTPEELRKIFKIENDFSPEEEAELMKR 343
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. ExPASy Swiss-Prot
Match: Q9Y709 (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=skp1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-28
Identity = 66/150 (44.00%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 204 LQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEW------ 263
           ++L SSD+E + V++ +A++S LI+  LE VGE N PIPLPNVS  +LR  +EW      
Sbjct: 4   IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKN 63

Query: 264 -----STKNADEKLAKE-ELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAG 323
                + + +D +L K  +++EW+ KFM VD +++FE++LA+N L++  LL+  CK VA 
Sbjct: 64  DLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVAN 123

Query: 324 IMAGKTPEELRKIFKIENDFSPEEEAELMK 342
           ++ GK+PE++RK F I NDF+PEEE ++ K
Sbjct: 124 MIRGKSPEDIRKTFNIPNDFTPEEEEQIRK 153

[Close]

BLAST of Spg009814 vs. ExPASy Swiss-Prot
Match: B6QGB9 (E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=sconC PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-27
Identity = 64/146 (43.84%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 206 LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWST------ 265
           L+SSD     VE AVA++S LI+  LE +GE   P+P+PNV+  +L+  +EW T      
Sbjct: 7   LQSSDSVDITVERAVAERSMLIKNLLEDLGESEEPVPIPNVNESVLKKVIEWCTHHKNDP 66

Query: 266 ----KNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 325
               ++ D +    E++EW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA ++ G
Sbjct: 67  QSTGEDDDNRRRTTEIDEWDQKFMQVDQEMLFEIILAANYLDIKALLDVGCKTVANMIKG 126

Query: 326 KTPEELRKIFKIENDFSPEEEAELMK 342
           K+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 127 KSPEEIRKTFNIQNDFTPEEEDQIRR 152

[Close]

BLAST of Spg009814 vs. ExPASy Swiss-Prot
Match: B8MDP8 (E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=sconC PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-27
Identity = 66/146 (45.21%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 206 LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWST--KNAD 265
           L+SSD     VE AVA++S LI+  LE +GE   P+P+PNV+  +L+  +EW T  KN  
Sbjct: 7   LQSSDQVNITVERAVAERSMLIKNLLEDLGESEEPVPIPNVNESVLKKVIEWCTHHKNDP 66

Query: 266 EKLAKE--------ELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 325
           +   +E        E++EW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA ++ G
Sbjct: 67  QTTGEEDDNRRRTTEIDEWDQKFMQVDQEMLFEIILAANYLDIKALLDVGCKTVANMIKG 126

Query: 326 KTPEELRKIFKIENDFSPEEEAELMK 342
           K+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 127 KSPEEIRKTFNIQNDFTPEEEDQIRR 152

[Close]

BLAST of Spg009814 vs. ExPASy Swiss-Prot
Match: Q5BAX8 (E3 ubiquitin ligase complex SCF subunit sconC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=sconC PE=3 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 4.7e-26
Identity = 63/150 (42.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEW---- 261
           K+L + S+D +   V   VA++S LI+  LE +G+   PIP+PNVS  +L   +EW    
Sbjct: 4   KMLVMTSNDGKNIEVPRDVAERSLLIKNMLEDLGDPTEPIPIPNVSENVLSKVLEWCAHH 63

Query: 262 ------STKNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAG 321
                 S  + D +    ++EEW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA 
Sbjct: 64  RNDPPSSADDDDSRRKTTDIEEWDQKFMQVDQEMLFEIILAANYLDIKPLLDIGCKTVAN 123

Query: 322 IMAGKTPEELRKIFKIENDFSPEEEAELMK 342
           ++ GK+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 124 MIKGKSPEEIRKTFNIQNDFTPEEEDQIRR 153

[Close]

BLAST of Spg009814 vs. ExPASy Swiss-Prot
Match: D4ARL8 (E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=sconC PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-26
Identity = 62/156 (39.74%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 197 SSTGPKILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAME 256
           +ST    + L SSD     +E  VA++S LI+  LE +G+   PIP+PNV+  +L+  +E
Sbjct: 2   ASTATNKITLTSSDGVEVTIERQVAERSILIKNMLEDLGDSGEPIPIPNVNESVLKKVIE 61

Query: 257 W-----------STKNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRL 316
           W              + D +    +++EW+ KFM+VD +++FE+ILAAN L++  LL+  
Sbjct: 62  WCEHHKGDPPSTGDDDVDSRRKTTDIDEWDQKFMQVDQEMLFEIILAANYLDIKALLDVG 121

Query: 317 CKKVAGIMAGKTPEELRKIFKIENDFSPEEEAELMK 342
           CK VA ++ GK+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 122 CKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRR 157

[Close]

BLAST of Spg009814 vs. ExPASy TrEMBL
Match: A0A6J1CDL6 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111010258 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-35
Identity = 81/138 (58.70%), Postives = 110/138 (79.71%), Query Frame = 0


Query: 206 LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTKNADEK 265
           LK+ D++IY VEEA+AKQSG+IR FLE    +   IPL  V+ RML++ MEW   +A E+
Sbjct: 6   LKTCDNQIYEVEEAIAKQSGVIRNFLEDFDGDCVEIPLLKVNERMLKVVMEWCAMHAGEE 65

Query: 266 LAKEELEEWESKFMEV-DMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKI 325
           L ++EL++WESKF+ + D+D ++E+++AAN LE+ DL++RLCKKVA I+AGK PEE+RKI
Sbjct: 66  LEEKELQDWESKFVAMDDLDFLYEVLMAANYLEVVDLVHRLCKKVADIIAGKQPEEIRKI 125

Query: 326 FKIENDFSPEEEAELMKR 343
           F IENDF+PEEEAEL KR
Sbjct: 126 FNIENDFTPEEEAELRKR 143

[Close]

BLAST of Spg009814 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-31
Identity = 76/144 (52.78%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEEN--APIPLPNVSGRMLRMAMEWST 261
           +I+ L+SS++EI++V E VAKQS ++R FLE     N    IPLPN+SGR+L M +EW  
Sbjct: 2   RIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIV 61

Query: 262 KNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 321
            + +EKLA+E L  W++KF+E +D+D++FELI+AAN LE+TDL +  C+ VA  ++GK+P
Sbjct: 62  MHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSP 121

Query: 322 EELRKIFKIENDFSPEEEAELMKR 343
           EE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 EEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 76/147 (51.70%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPNVSGRMLRMAME 261
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLPN+SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 262 WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 321
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 322 KTPEELRKIFKIENDFSPEEEAELMKR 343
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 76/147 (51.70%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPNVSGRMLRMAME 261
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLPN+SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 262 WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 321
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 322 KTPEELRKIFKIENDFSPEEEAELMKR 343
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 76/147 (51.70%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPNVSGRMLRMAME 261
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLPN+SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 262 WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 321
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 322 KTPEELRKIFKIENDFSPEEEAELMKR 343
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Spg009814 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-24
Identity = 64/150 (42.67%), Postives = 94/150 (62.67%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTKN 261
           K++ LKSSD E + +EEAVA +S  I+  +E    +N  IPLPNV+G +L   +E+  K+
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG-IPLPNVTGAILAKVIEYCKKH 65

Query: 262 ADE------------KLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKV 321
            +                 +EL+ W+S+F++VD   +F+LILAAN L +  LL+  CK V
Sbjct: 66  VEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAV 125

Query: 322 AGIMAGKTPEELRKIFKIENDFSPEEEAEL 340
           A  M GKTPE++R  F I+ND++PEEEAE+
Sbjct: 126 ADQMRGKTPEQMRAHFNIKNDYTPEEEAEV 154

[Close]

BLAST of Spg009814 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-23
Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTKN 261
           K + LKSSD E + VEEAVA +S  I   +E    +N  +PLPNV+ ++L   +E+  ++
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG-VPLPNVTSKILAKVIEYCKRH 63

Query: 262 ADEKLAK-----------EELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVA 321
            +   +K           ++L+ W++ FM++D   +FELILAAN L + +LL+  C+ VA
Sbjct: 64  VEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVA 123

Query: 322 GIMAGKTPEELRKIFKIENDFSPEEEAELMK 342
            ++ GKTPEE+R  F I+NDF+PEEE E+ +
Sbjct: 124 DMIKGKTPEEIRTTFNIKNDFTPEEEEEVRR 153

[Close]

BLAST of Spg009814 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-22
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTK- 261
           K++ L SSD + + VEEAVA QS  I   +E     +  IPL NV  ++L   +E+  K 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG-IPLANVESKILVKVIEYCKKH 63

Query: 262 NADE--KLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 321
           + DE   +++E+L  W+ KFM+++   +FELILAAN L +  LL+  C+ VA ++ GKTP
Sbjct: 64  HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTP 123

Query: 322 EELRKIFKIENDFSPEEEAELMK 342
           EE+R  F IENDF+PEEE  + K
Sbjct: 124 EEIRSTFNIENDFTPEEEEAVRK 145

[Close]

BLAST of Spg009814 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-22
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 0


Query: 204 LQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEW------ 263
           + LKSSD E + ++EAVA +S  I+  +E    +N  IPLPNV+ ++L   +E+      
Sbjct: 7   ITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG-IPLPNVTSKILSKVIEYCKRHVE 66

Query: 264 ----STKNADEKLA-----------KEELEEWESKFMEVDMDVMFELILAANNLELTDLL 323
               S   AD   A            E+L+ W+S+F++VD   +F+LILAAN L +  LL
Sbjct: 67  AAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLL 126

Query: 324 NRLCKKVAGIMAGKTPEELRKIFKIENDFSPEEEAELMK 342
           +  C+ VA ++ GKTPEE+RK F I+NDF+PEEE E+ +
Sbjct: 127 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRR 164

[Close]

BLAST of Spg009814 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-22
Identity = 61/150 (40.67%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 202 KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPNVSGRMLRMAMEWSTKN 261
           K++ LKSSD E + VEEAVA +S  I+  +E    +N  IPLPNV+G +L   +E+  K+
Sbjct: 6   KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNG-IPLPNVTGAILAKVIEYCKKH 65

Query: 262 ADE------------KLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKV 321
            +                  EL+ W++ F++VD   +F+L+ AAN L ++ LL+  CK V
Sbjct: 66  VEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAV 125

Query: 322 AGIMAGKTPEELRKIFKIENDFSPEEEAEL 340
           A  M GKTP ++R+ F I+ND++PEEEAE+
Sbjct: 126 ADQMRGKTPAQMREHFNIKNDYTPEEEAEV 154

The following BLAST results are available for this feature:

BLAST of Spg009814 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648853.1	5.1e-38	38.85	hypothetical protein Csa_008932 [Cucumis sativus]	[more]
XP_022139312.1	4.1e-35	58.70	SKP1-like protein 14 [Momordica charantia]	[more]
XP_004142439.1	2.1e-31	52.78	SKP1-like protein 14 [Cucumis sativus]	[more]
TYK09255.1	2.7e-31	51.70	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008446842.1	2.7e-31	51.70	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]

BLAST of Spg009814 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y709	3.8e-28	44.00	Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
B6QGB9	2.5e-27	43.84	E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces marneffei (strain A...	[more]
B8MDP8	2.5e-27	45.21	E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces stipitatus (strain ...	[more]
Q5BAX8	4.7e-26	42.00	E3 ubiquitin ligase complex SCF subunit sconC OS=Emericella nidulans (strain FGS...	[more]
D4ARL8	6.1e-26	39.74	E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma benhamiae (strain A...	[more]

BLAST of Spg009814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDL6	2.0e-35	58.70	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111010258 PE=3 SV=1	[more]
A0A0A0KRJ8	1.0e-31	52.78	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A5A7SU15	1.3e-31	51.70	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	1.3e-31	51.70	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGP6	1.3e-31	51.70	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]

BLAST of Spg009814 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20140.1	2.0e-24	42.67	SKP1-like 4	[more]
AT1G75950.1	1.7e-23	40.40	S phase kinase-associated protein 1	[more]
AT4G34210.1	1.1e-22	44.06	SKP1-like 11	[more]
AT5G42190.1	1.4e-22	40.25	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT2G25700.1	2.5e-22	40.67	SKP1-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 201..298 e-value: 6.6E-31 score: 118.7
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 203..261 e-value: 6.6E-15 score: 55.0
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 300..340 e-value: 4.9E-16 score: 58.5
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 199..343 e-value: 2.4E-44 score: 153.3
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 203..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR11165:SF110	SCF UBIQUITIN LIGASE, SKP1 COMPONENT	coord: 202..339
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 203..313 e-value: 3.69805E-34 score: 120.004
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 202..339
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 271..342

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009814.1	Spg009814.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0097602	cullin family protein binding